BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644764|ref|NP_206934.1|
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (dhs1)
[Helicobacter pylori 26695]
(449 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 32 0.19
pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydro... 29 1.2
pdb|1I11|A Chain A, Solution Structure Of The Dna Binding D... 28 2.7
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp 27 3.6
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 31.6 bits (70), Expect = 0.19
Identities = 22/63 (34%), Positives = 30/63 (46%), Gaps = 4/63 (6%)
Query: 54 LAQVIDNKA----FLLQGGDCAESFSQFSANRIRDMFKVMMQMAIVLTFAGSIPIVKVGR 109
LA+ I +A F + G D E F A+R+RDMF+ + A + F I V R
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 110 IAG 112
AG
Sbjct: 121 GAG 123
>pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|B Chain B, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|D Chain D, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|E Chain E, Escherichia Coli Dihydroorotate Dehydrogenase
Length = 336
Score = 28.9 bits (63), Expect = 1.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 265 IGERTRDPKGAHVEFLRGVCNPIGVKIGPNASVSEVLELCDVLNPRNIKG 314
I + D + H +++ PI VKI P+ S E++++ D L NI G
Sbjct: 197 IKNKQNDLQAXHHKYV-----PIAVKIAPDLSEEELIQVADSLVRHNIDG 241
>pdb|1I11|A Chain A, Solution Structure Of The Dna Binding Domain, Sox-5 Hmg
Box From Mouse
Length = 81
Score = 27.7 bits (60), Expect = 2.7
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 323 GSKMIKERLPKLLQGVLEEKRHILWSIDPMHGNTVKTSLGVKTRAFDSVLDEVKSFFEIH 382
GS IK + + +E+R IL + MH + + LG + +A ++ E + ++E
Sbjct: 1 GSPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNL--EKQPYYE-- 56
Query: 383 RAEGSLASGVHLE 395
E + S HLE
Sbjct: 57 --EQARLSKQHLE 67
>pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 586
Score = 27.3 bits (59), Expect = 3.6
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 174 GLADLEQVHRFNLDFVKNNDFGQKYQQIAD-RITQALGFMRACGVEIERTPILREVEFYT 232
G D+EQV + + +KNN Y+Q D + G + A G P+ V
Sbjct: 262 GFIDVEQVRKLAVPLIKNNYGQYLYKQTKDSNMKMRKGIILAGGSGTRLYPVTMAVS--- 318
Query: 233 SHEALLLHYEEPLV 246
+ LL Y++P++
Sbjct: 319 --KQLLPIYDKPMI 330
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,502,718
Number of Sequences: 13198
Number of extensions: 101876
Number of successful extensions: 222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 5
length of query: 449
length of database: 2,899,336
effective HSP length: 91
effective length of query: 358
effective length of database: 1,698,318
effective search space: 607997844
effective search space used: 607997844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)