BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645945|ref|NP_208124.1| co-chaperone and heat shock
protein (dnaJ) [Helicobacter pylori 26695]
(369 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1XBL| Nmr Structure Of The J-Domain (Residues 2-76) I... 108 7e-25
pdb|1BQ0| J-Domain (Residues 1-77) Of The Escherichia Col... 107 3e-24
pdb|1BQZ| J-Domain (Residues 1-77) Of The Escherichia Col... 96 8e-21
pdb|1HDJ| Human Hsp40 (Hdj-1), Nmr 80 3e-16
pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich... 72 8e-14
pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 64 4e-11
pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv... 32 0.11
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 31 0.26
pdb|1IKT|A Chain A, Liganded Sterol Carrier Protein Type 2 ... 29 0.74
pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone Fro... 27 4.8
pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Me... 26 6.3
pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic... 26 6.3
>pdb|1XBL| Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia
Coli N-Terminal Fragment (Residues 2-108) Of The
Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 108 bits (271), Expect = 7e-25
Identities = 56/103 (54%), Positives = 68/103 (65%), Gaps = 4/103 (3%)
Query: 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64
YYEIL V K + + I+K+Y++LA+KYHPDRN GDKEAE KFK I EAY VL+D +KRA
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 65 YDRYGKKGLNQAGASQGDF---SDFFEDLGSFFEDAFGFGARG 104
YD+YG Q G G F +DF + G F D FG G RG
Sbjct: 65 YDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFG-GGRG 106
>pdb|1BQ0| J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal
Fragment (Residues 1-104) Of The Molecular Chaperone
Dnaj, Nmr, 20 Structures
Length = 103
Score = 107 bits (266), Expect = 3e-24
Identities = 53/98 (54%), Positives = 65/98 (66%), Gaps = 3/98 (3%)
Query: 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64
YYEIL V K + + I+K+Y++LA+KYHPDRN GDKEAE KFK I EAY VL+D +KRA
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 65 YDRYGKKGLNQAGASQGDF---SDFFEDLGSFFEDAFG 99
YD+YG Q G G F +DF + G F D FG
Sbjct: 65 YDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFG 102
>pdb|1BQZ| J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal
Fragment (Residues 1-78) Of The Molecular Chaperone
Dnaj, Nmr, 20 Structures
Length = 77
Score = 95.5 bits (236), Expect = 8e-21
Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64
YYEIL V K + + I+K+Y++LA+KYHPDRN GDKEAE KFK I EAY VL+D +KRA
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 65 YDRYGKKGLNQAG 77
YD+YG Q G
Sbjct: 65 YDQYGHAAFEQGG 77
>pdb|1HDJ| Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 80.5 bits (197), Expect = 3e-16
Identities = 38/73 (52%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64
YY+ L + + ++ E IK++YR+ AL+YHPD+N + AEEKFK I EAY VLSD +KR +
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 65 YDRYGKKGLNQAG 77
+DRYG++GL +G
Sbjct: 64 FDRYGEEGLKGSG 76
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 72.4 bits (176), Expect = 8e-14
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 133 KTIKVQYQSVCESCDGTGAKDKAL-ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIV 191
K I++ C+ C G+GAK +TC C+G GQV MRQGF + QTC CQG+G ++
Sbjct: 4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63
Query: 192 KTPCQACKG 200
K PC C G
Sbjct: 64 KDPCNKCHG 72
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 63.5 bits (153), Expect = 4e-11
Identities = 43/144 (29%), Positives = 72/144 (49%), Gaps = 2/144 (1%)
Query: 199 KGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGN-EYEKGKRGDLYLEAQVKEDEHFKREG 257
KG + +ID + G ++ KN+G+ + G+R L Q K +FKR+G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 258 CDLFIKAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDKQTFAFRNEGVKHPES-SYR 316
DL P+ F LG + + ++ G L L + + QT + +G+ P++ S R
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQR 146
Query: 317 GSLIVELQVIYPKSLNKEQQELLE 340
G+LIV+ +V YP SLN Q+ ++
Sbjct: 147 GNLIVKYKVDYPISLNDAQKRAID 170
Score = 27.3 bits (59), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 115 DYLQTLELSFKEAVFGCKKTIK 136
D + TL LSFKE++ G KTI+
Sbjct: 88 DLIYTLPLSFKESLLGFSKTIQ 109
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/61 (34%), Positives = 30/61 (48%), Gaps = 4/61 (6%)
Query: 9 LEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRY 68
LE N ++K+Y K ++HPD+ GD EEK K +N Y + D K A +
Sbjct: 16 LERSAWGNIPLMRKAYLKKCKEFHPDK-GGD---EEKMKKMNTLYKKMEDGVKYAHQPDF 71
Query: 69 G 69
G
Sbjct: 72 G 72
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 30.8 bits (68), Expect = 0.26
Identities = 19/78 (24%), Positives = 39/78 (49%), Gaps = 1/78 (1%)
Query: 276 TIKVPSLKGDELELKIPRNARDKQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQ 335
T + L+ +L LK+ + ++K+ +G K E + ++ L+ +YP+ L+ +
Sbjct: 18 TASLAELQQXKLFLKLLKK-QEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQV 76
Query: 336 QELLEKLHASFGYEGEPH 353
EL E+L + GE +
Sbjct: 77 VELKERLEXELIHLGEEY 94
>pdb|1IKT|A Chain A, Liganded Sterol Carrier Protein Type 2 (Scp-2) Like Domain
Of Human Multifunctional Enzyme Type 2 (Mfe-2)
Length = 120
Score = 29.3 bits (64), Expect = 0.74
Identities = 24/88 (27%), Positives = 37/88 (41%), Gaps = 4/88 (4%)
Query: 148 GTGAKDKALETCKQCNGQGQVFMRQGFMSFAQ-TCGACQGKGKIVKTPCQACKGKTYILK 206
G KD E K+ N + + +G A+ T G GK+ + P + T IL
Sbjct: 16 GRRLKDIGPEVVKKVNAVFEWHITKGGNIGAKWTIDLKSGSGKVYQGPAKGAADTTIILS 75
Query: 207 DEEIDAIIPEGIDDQNRMV---LKNKGN 231
DE+ ++ +D Q LK +GN
Sbjct: 76 DEDFMEVVLGKLDPQKAFFSGRLKARGN 103
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 26.6 bits (57), Expect = 4.8
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 5/53 (9%)
Query: 18 ETIKKSYRKLALKYHPDRNAGDKEAE-----EKFKLINEAYGVLSDEKKRALY 65
+ + ++ L +YHPD+ A +AE ++ IN+A+ L RA Y
Sbjct: 18 QALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEY 70
>pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
Length = 274
Score = 26.2 bits (56), Expect = 6.3
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 286 ELELKIPRNARDKQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEKL 342
EL + R RD Q F EG + E + + + +E +++ LN E+Q++ L
Sbjct: 13 ELARLLERKHRDSQR-RFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAAL 68
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 26.2 bits (56), Expect = 6.3
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 82 DFSDFFEDLGSFFEDAFGFGARGSKRQK 109
++ D GSF++D GFG K Q+
Sbjct: 83 EYGDLTSSQGSFYKDTVGFGGISIKNQQ 110
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,246,957
Number of Sequences: 13198
Number of extensions: 98212
Number of successful extensions: 403
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 13
length of query: 369
length of database: 2,899,336
effective HSP length: 90
effective length of query: 279
effective length of database: 1,711,516
effective search space: 477512964
effective search space used: 477512964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)