BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645946|ref|NP_208125.1| hypothetical protein
[Helicobacter pylori 26695]
(382 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2 - Human Cyc... 35 0.011
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 32 0.16
pdb|1FIN|B Chain B, Cyclin A - Cyclin-Dependent Kinase 2 Co... 31 0.20
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NI... 31 0.20
pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate... 31 0.20
pdb|1VIN| Bovine Cyclin A3 30 0.35
pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Huma... 30 0.59
pdb|1JB7|A Chain A, Dna G-Quartets In A 1.86 A Resolution S... 29 0.78
pdb|1CII| Colicin Ia 29 0.78
pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 ... 27 3.0
pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna >... 27 3.0
pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549 >g... 27 3.0
pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Comp... 27 3.9
pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Ph... 26 6.6
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2 - Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2 - Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 35.4 bits (80), Expect = 0.011
Identities = 17/51 (33%), Positives = 25/51 (48%)
Query: 258 ENLKSCAKELHQRYQNALIERDKELKNAKNNKEKHALILANYEHTLKTLNI 308
E+LK C +LHQ Y A + ++ N + H + L N TL LN+
Sbjct: 211 ESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETLNLLNL 261
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 31.6 bits (70), Expect = 0.16
Identities = 52/231 (22%), Positives = 87/231 (37%), Gaps = 31/231 (13%)
Query: 91 ALLKQSALELEKLQALEKHIKK-----GMEQERLIEESQTLFLQEHCP--YLSGVKNLEE 143
A L+Q L L+ L+ EK +K+ +E L+++ LFL+ P S V L+E
Sbjct: 22 AELQQXKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKE 81
Query: 144 ASNALEV---QEQNNALFLLKEPKLARLLSRLDLMSALNALCDQVLENQAHNQQSHNKIL 200
+ +E ++ + KE +++ ++ +I
Sbjct: 82 RLEXELIHLGEEYHDGIRRRKEQHATEQTAKITELAR------------------EKQIA 123
Query: 201 EYNALKNHDFQAYKAMRLKKFKNKLQSQIQAQEDALKTFLPLEKRLETLKTHFLCDKENL 260
E ALK K ++ KK + K +IQ + E+ + + + +
Sbjct: 124 ELKALKESSESNIKDIK-KKLEAKRLDRIQVXXRSTSDKAAQERLKKEINNSHIQEVVQT 182
Query: 261 KSCAKELHQRYQNALIERDKELKNAKNNKEKHAL--ILANYEHTLKTLNIE 309
E RYQ L E+ E A KE +A YE LKTL +E
Sbjct: 183 IKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVE 233
>pdb|1FIN|B Chain B, Cyclin A - Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A - Cyclin-Dependent Kinase 2 Complex
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
Length = 260
Score = 31.2 bits (69), Expect = 0.20
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 258 ENLKSCAKELHQRYQNALIERDKELKNAKNNKEKHALILANYEHTL 303
E+LK C +LHQ Y A + ++ N + H + L N TL
Sbjct: 213 ESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 258
>pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
Substrate
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
Substrate
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
Length = 258
Score = 31.2 bits (69), Expect = 0.20
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 258 ENLKSCAKELHQRYQNALIERDKELKNAKNNKEKHALILANYEHTL 303
E+LK C +LHQ Y A + ++ N + H + L N TL
Sbjct: 211 ESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 256
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
Length = 259
Score = 31.2 bits (69), Expect = 0.20
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 258 ENLKSCAKELHQRYQNALIERDKELKNAKNNKEKHALILANYEHTL 303
E+LK C +LHQ Y A + ++ N + H + L N TL
Sbjct: 212 ESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 257
>pdb|1VIN| Bovine Cyclin A3
Length = 268
Score = 30.4 bits (67), Expect = 0.35
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 258 ENLKSCAKELHQRYQNALIERDKELKNAKNNKEKHALILANYEHTL 303
E LK C +LHQ Y A + ++ N + H + L N TL
Sbjct: 215 ETLKPCLLDLHQTYLRAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 150
Score = 29.6 bits (65), Expect = 0.59
Identities = 27/126 (21%), Positives = 52/126 (40%), Gaps = 6/126 (4%)
Query: 27 NAKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQLKEIKKANSTLNSQRRFFNASQIRL 86
NA + + + D + L +S+ S+ + + + KA + RR + Q
Sbjct: 19 NALERKRRDHIKDSFHSLRDSV---PSLQGEKASRAQILDKATEYIQYMRRKNHTHQ--- 72
Query: 87 MDTDALLKQSALELEKLQALEKHIKKGMEQERLIEESQTLFLQEHCPYLSGVKNLEEASN 146
D D L +Q+AL ++++ALEK Q +L+ +S ++S+
Sbjct: 73 QDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDNSLYTNAKGSTISAFDGGSDSSS 132
Query: 147 ALEVQE 152
E +E
Sbjct: 133 ESEPEE 138
>pdb|1JB7|A Chain A, Dna G-Quartets In A 1.86 A Resolution Structure Of An
Oxytricha Nova Telomeric Protein-Dna Complex
pdb|1OTC|A Chain A, The O. Nova Telomere End Binding Protein Complexed With
Single Strand Dna
pdb|1KIX|A Chain A, Dimeric Structure Of The O. Nova Telomere End Binding
Protein Alpha Subunit With Bound Ssdna
Length = 495
Score = 29.3 bits (64), Expect = 0.78
Identities = 18/67 (26%), Positives = 35/67 (51%), Gaps = 9/67 (13%)
Query: 286 KNNKEKHALILANYEHTL---------KTLNIEFLSELNKQMAFLNETMALNARVLALLA 336
+ + +K LIL++Y + + K L + + + ++A L + ++LNA VL +
Sbjct: 280 ETSTQKKVLILSHYSNIITFIQSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVLTEVD 339
Query: 337 KQHAKTP 343
K+HA P
Sbjct: 340 KKHAALP 346
>pdb|1CII| Colicin Ia
Length = 602
Score = 29.3 bits (64), Expect = 0.78
Identities = 23/72 (31%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Query: 245 RLETLKTHFLCDKENLKSCAKELHQRYQNALIERDKELKNAKNNKEKHALILANYEHTLK 304
RL T D ++L+ +E + A +K K+A+N +K A +LA YE
Sbjct: 135 RLHTESRMLFADADSLRISPREARSLIEQA----EKRQKDAQNADKKAADMLAEYERRKG 190
Query: 305 TLNIEFLSELNK 316
L+ LSEL K
Sbjct: 191 ILDTR-LSELEK 201
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|B Chain B, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|C Chain C, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
Length = 213
Score = 27.3 bits (59), Expect = 3.0
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 19/112 (16%)
Query: 218 LKKFKNKLQSQIQAQEDALKTFLPLEKRLETLKTHFLCDKENLKSCAKELHQRYQNALIE 277
L+K +L++++ A E A+++ L K+L T KE Q+ ++
Sbjct: 38 LRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNT-----------IGKEEIQQRLAQFVD 86
Query: 278 RDKELKNAKNNKEKHALILANYEHTLKTLNIEFLSELNKQMAFLNETMALNA 329
KELK + + Y+ +F++ + ++ A++NE M L A
Sbjct: 87 HWKELKQLAAARGQRLEESLEYQ--------QFVANVEEEEAWINEKMTLVA 130
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna
pdb|1AN2|C Chain C, Recognition By Max Of Its Cognate Dna
Length = 86
Score = 27.3 bits (59), Expect = 3.0
Identities = 21/82 (25%), Positives = 39/82 (46%), Gaps = 6/82 (7%)
Query: 27 NAKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQLKEIKKANSTLNSQRRFFNASQIRL 86
NA + + + D + L +S+ S+ + + + KA + RR + Q
Sbjct: 8 NALERKRRDHIKDSFHSLRDSV---PSLQGEKASRAQILDKATEYIQYMRRKNHTHQ--- 61
Query: 87 MDTDALLKQSALELEKLQALEK 108
D D L +Q+AL ++++ALEK
Sbjct: 62 QDIDDLKRQNALLEQQVRALEK 83
>pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549
pdb|1F1C|B Chain B, Crystal Structure Of Cytochrome C549
Length = 129
Score = 27.3 bits (59), Expect = 3.0
Identities = 28/109 (25%), Positives = 43/109 (38%), Gaps = 11/109 (10%)
Query: 62 LKEIKKANSTLNSQRRFFNASQIRLMDTDALLKQSALEL-----EKLQALEKHIKKGMEQ 116
LKEIKK N+ +A + + D L AL L + + AL +IK
Sbjct: 21 LKEIKKGQQVFNAACAQCHALGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTY 80
Query: 117 ERLIEESQTLFLQEHCPYLSGVKNLEEASNALEVQEQNNALFLLKEPKL 165
+ +E + E P L + N E N A ++L +PK+
Sbjct: 81 DGFVE------ISELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQPKV 123
>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 551
Score = 26.9 bits (58), Expect = 3.9
Identities = 24/111 (21%), Positives = 55/111 (48%), Gaps = 10/111 (9%)
Query: 16 AQIMMTFDSQTNAKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQLK----EIKKANST 71
A+ + ++S+ ++L +N+ L+D + ++ + R ++ + + ++A +
Sbjct: 345 AKAVQVYNSR-KSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTD 403
Query: 72 LNSQRRFFNASQIRLMDTDALLKQSALELEKLQALEKHIKKGMEQERLIEE 122
+N+++ F+A+ D DA L SA+E K +K KK + L +E
Sbjct: 404 VNNKQAAFDAAAKEKSDADAAL-SSAMESRK----KKEDKKRSAENNLNDE 449
>pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1FOU|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1FOU|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1FOU|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1FOU|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1FOU|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1FOU|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1FOU|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1FOU|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1FOU|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1FOU|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1FOU|L Chain L, Connector Protein From Bacteriophage Phi29
Length = 309
Score = 26.2 bits (56), Expect = 6.6
Identities = 13/46 (28%), Positives = 24/46 (51%)
Query: 19 MMTFDSQTNAKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQLKE 64
MMTF QTNA L + ++D + +E + +V ++++ E
Sbjct: 221 MMTFKLQTNANLEKKERMVTDEVSSNDEQIDSSGTVFLKSREEACE 266
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.131 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,817,456
Number of Sequences: 13198
Number of extensions: 66732
Number of successful extensions: 212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 15
length of query: 382
length of database: 2,899,336
effective HSP length: 90
effective length of query: 292
effective length of database: 1,711,516
effective search space: 499762672
effective search space used: 499762672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)