BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645947|ref|NP_208126.1| hypothetical protein
[Helicobacter pylori 26695]
(224 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2CAS| Canine Parvovirus Empty Capsid (Strain D) Viral... 27 1.9
pdb|4DPV|Z Chain Z, Canine Parvovirus Strain D Viral Protei... 27 1.9
pdb|1C8F|A Chain A, Feline Panleukopenia Virus Empty Capsid... 27 1.9
pdb|1FPV| Feline Panleukopenia Virus (Strain B) Viral Pro... 27 1.9
pdb|1C8D|A Chain A, Canine Panleukopenia Virus Empty Capsid... 27 1.9
pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught ... 27 2.5
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small S... 27 2.5
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthe... 27 2.5
pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hy... 27 2.5
pdb|1K3V|A Chain A, Porcine Parvovirus Capsid 27 2.5
pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box... 26 3.3
pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprote... 26 4.2
pdb|1G2R|A Chain A, Hypothetical Cytosolic Protein Coded By... 25 9.5
>pdb|2CAS| Canine Parvovirus Empty Capsid (Strain D) Viral Protein 2
Length = 548
Score = 26.9 bits (58), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 1/36 (2%)
Query: 45 HINKKNDEELYRIFFYDCKPLKKKAHYPYTQKALDL 80
H+ + DE FF+DCKP + H T +AL L
Sbjct: 217 HLLRTGDEFATGTFFFDCKPC-RLTHTWQTNRALGL 251
>pdb|4DPV|Z Chain Z, Canine Parvovirus Strain D Viral Protein 2
pdb|1C8H|A Chain A, Canine Parvovirus Strain D Empty Capsid Structure At Ph
5.5
Length = 584
Score = 26.9 bits (58), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 1/36 (2%)
Query: 45 HINKKNDEELYRIFFYDCKPLKKKAHYPYTQKALDL 80
H+ + DE FF+DCKP + H T +AL L
Sbjct: 253 HLLRTGDEFATGTFFFDCKPC-RLTHTWQTNRALGL 287
>pdb|1C8F|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8G|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8E|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
Length = 548
Score = 26.9 bits (58), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 1/36 (2%)
Query: 45 HINKKNDEELYRIFFYDCKPLKKKAHYPYTQKALDL 80
H+ + DE FF+DCKP + H T +AL L
Sbjct: 217 HLLRTGDEFATGTFFFDCKPC-RLTHTWQTNRALGL 251
>pdb|1FPV| Feline Panleukopenia Virus (Strain B) Viral Protein 2
Length = 584
Score = 26.9 bits (58), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 1/36 (2%)
Query: 45 HINKKNDEELYRIFFYDCKPLKKKAHYPYTQKALDL 80
H+ + DE FF+DCKP + H T +AL L
Sbjct: 253 HLLRTGDEFATGTFFFDCKPC-RLTHTWQTNRALGL 287
>pdb|1C8D|A Chain A, Canine Panleukopenia Virus Empty Capsid Structure
pdb|1IJS|P Chain P, Cpv(Strain D) Mutant A300d, Complex(Viral CoatDNA), VP2,
Ph7.5, T4 Degrees C
Length = 584
Score = 26.9 bits (58), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 1/36 (2%)
Query: 45 HINKKNDEELYRIFFYDCKPLKKKAHYPYTQKALDL 80
H+ + DE FF+DCKP + H T +AL L
Sbjct: 253 HLLRTGDEFATGTFFFDCKPC-RLTHTWQTNRALGL 287
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1058
Score = 26.6 bits (57), Expect = 2.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 182 PASKLARVEGIIFTLDPMGNHIR-----EDLKEHIDYLTTRLPQF 221
P +K+A + +TLD + N I + IDY+ T++P+F
Sbjct: 318 PIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRF 362
>pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 1073
Score = 26.6 bits (57), Expect = 2.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 182 PASKLARVEGIIFTLDPMGNHIR-----EDLKEHIDYLTTRLPQF 221
P +K+A + +TLD + N I + IDY+ T++P+F
Sbjct: 318 PIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRF 362
>pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
Length = 1073
Score = 26.6 bits (57), Expect = 2.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 182 PASKLARVEGIIFTLDPMGNHIR-----EDLKEHIDYLTTRLPQF 221
P +K+A + +TLD + N I + IDY+ T++P+F
Sbjct: 318 PIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRF 362
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 26.6 bits (57), Expect = 2.5
Identities = 14/53 (26%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Query: 107 GYLDEKNARW--VIRDQEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGL 157
G++D W IR+ ++E + +++I E ++ Y AK K +K L
Sbjct: 37 GHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWL 89
>pdb|1K3V|A Chain A, Porcine Parvovirus Capsid
Length = 579
Score = 26.6 bits (57), Expect = 2.5
Identities = 19/64 (29%), Positives = 27/64 (41%), Gaps = 1/64 (1%)
Query: 45 HINKKNDEELYRIFFYDCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCLAL 104
H+ + DE I+ +D KPL K H T ++L L E +H + P
Sbjct: 254 HLLRTGDEFSTGIYHFDTKPL-KLTHSWQTNRSLGLPPKLLTEPTTEGDQHPGTLPAANT 312
Query: 105 RLGY 108
R GY
Sbjct: 313 RKGY 316
>pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box In Human Upstream
Binding Factor
Length = 99
Score = 26.2 bits (56), Expect = 3.3
Identities = 22/89 (24%), Positives = 38/89 (41%), Gaps = 6/89 (6%)
Query: 66 KKKAHYPYTQKALD------LSKSPTYREREELHEHLISKPCLALRLGYLDEKNARWVIR 119
K K H + +K L + K Y + +L L+ + L EK I+
Sbjct: 3 KLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQ 62
Query: 120 DQEKEKKLFNRRISIEEFQNDDFIYHAKQ 148
D ++EK+ F R ++ + D I +AK+
Sbjct: 63 DFQREKQEFERNLARFREDHPDLIQNAKK 91
>pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|B Chain B, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|C Chain C, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|D Chain D, Crystal Structure Of Human Apolipoprotein A-I
Length = 201
Score = 25.8 bits (55), Expect = 4.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 196 LDPMGNHIREDLKEHIDYLTTRLPQFKQQ 224
L P+G +R+ + H+D L T L + +
Sbjct: 99 LSPLGEEMRDRARAHVDALRTHLAPYSDE 127
>pdb|1G2R|A Chain A, Hypothetical Cytosolic Protein Coded By Gene From
NusaINFB, Ylxr Homologue
Length = 100
Score = 24.6 bits (52), Expect = 9.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 121 QEKEKKLFNRRIS--IEEFQNDDFIYHAKQKGVDIKIGLD 158
+ K+KK+FNR S +EE D+ I + K ++GL+
Sbjct: 61 EAKKKKVFNRSFSMEVEESFYDELIAYVDHKVKRRELGLE 100
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,341,469
Number of Sequences: 13198
Number of extensions: 56322
Number of successful extensions: 126
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 13
length of query: 224
length of database: 2,899,336
effective HSP length: 85
effective length of query: 139
effective length of database: 1,777,506
effective search space: 247073334
effective search space used: 247073334
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)