BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645948|ref|NP_208127.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(360 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HXM|B Chain B, Crystal Structure Of A Human Vgamma9VDE... 34 0.023
pdb|2MJP|A Chain A, Structure-Based Identification Of The B... 30 0.56
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 28 1.6
pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carbox... 27 2.8
pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehyd... 27 3.6
>pdb|1HXM|B Chain B, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|D Chain D, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|F Chain F, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|H Chain H, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 242
Score = 34.3 bits (77), Expect = 0.023
Identities = 18/70 (25%), Positives = 33/70 (46%), Gaps = 1/70 (1%)
Query: 181 LKKDIKPLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQ-GEVI 239
L D+ P +P + + K +C +EK + D +K H E +K + Q G +
Sbjct: 126 LDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTM 185
Query: 240 GTHKGYMQYT 249
T+ YM+++
Sbjct: 186 KTNDTYMKFS 195
>pdb|2MJP|A Chain A, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
pdb|2MJP|B Chain B, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
pdb|1B78|A Chain A, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
pdb|1B78|B Chain B, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
Length = 193
Score = 29.6 bits (65), Expect = 0.56
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 177 LGDLLKKDIKPLALNAMPFLGTLETYKESQEICFVEKSYIDTLKKHVEVEKEGVVKNLQG 236
L DL +I+ + ++ GTLE E F K + LKK V VE G
Sbjct: 28 LKDLKDVEIEQIKISYPEIQGTLEEVAE-----FGAKWVYNILKKPVIVEDSGFFVEALN 82
Query: 237 EVIGTHKGYMQYTIG 251
GT+ ++Q TIG
Sbjct: 83 GFPGTYSKFVQETIG 97
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/58 (25%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Query: 273 KKNELVVGKKEDLATHSLKAKNKSLMKDFK-DGEYFIKARYRSVPAKAHVSLKDEVIE 329
KK ++ + K+D HSL + K L+K + D F+ + K + ++D + E
Sbjct: 294 KKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSE 351
>pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|B Chain B, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|C Chain C, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|D Chain D, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1KA2|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Mg
pdb|1KA4|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Nat-Pb
Length = 499
Score = 27.3 bits (59), Expect = 2.8
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Query: 60 DLYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLA 119
D I A++A E+LG ++ YD ++ YEEG + K
Sbjct: 136 DKIISLAKRAAEYLG-----------YEEEPYDALLDLYEEGLRTRD------VEKMFEV 178
Query: 120 LDHALKLGCEKIAT-GHYARVKEIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLG 178
L+ LK +KI G R ++K Y +E +++ L+ L+ K FPLG
Sbjct: 179 LEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVN-----LWILQ-----KFGFPLG 228
Query: 179 DLLKKDI 185
+ D+
Sbjct: 229 TRARLDV 235
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 26.9 bits (58), Expect = 3.6
Identities = 11/43 (25%), Positives = 22/43 (50%)
Query: 116 FGLALDHALKLGCEKIATGHYARVKEIDKISYIQEALDKTKDQ 158
+G+A D + C G Y VK++ Y+ + + K++D+
Sbjct: 312 YGIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKIKKSEDE 354
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,102,246
Number of Sequences: 13198
Number of extensions: 89379
Number of successful extensions: 257
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 6
length of query: 360
length of database: 2,899,336
effective HSP length: 89
effective length of query: 271
effective length of database: 1,724,714
effective search space: 467397494
effective search space used: 467397494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)