BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645949|ref|NP_208128.1| hypothetical protein
[Helicobacter pylori 26695]
(253 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HDJ| Human Hsp40 (Hdj-1), Nmr 36 0.005
pdb|1BQZ| J-Domain (Residues 1-77) Of The Escherichia Col... 33 0.041
pdb|1BQ0| J-Domain (Residues 1-77) Of The Escherichia Col... 33 0.041
pdb|1XBL| Nmr Structure Of The J-Domain (Residues 2-76) I... 33 0.041
pdb|1UOR| X-Ray Study Of Recombinant Human Serum Albumin.... 27 1.7
pdb|1BKE| Human Serum Albumin In A Complex With Myristic ... 27 1.7
pdb|2PGD| 6-Phosphogluconate Dehydrogenase (6-Pgdh) (E.C.... 25 8.6
pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex Wit... 25 8.6
>pdb|1HDJ| Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 35.8 bits (81), Expect = 0.005
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 193 KECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAY 246
K+ Y+TLG + E+K+ Y A YHPD K K+ ++F I EAY
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPD----KNKEPGAEEKFKEIAEAY 52
>pdb|1BQZ| J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal
Fragment (Residues 1-78) Of The Molecular Chaperone
Dnaj, Nmr, 20 Structures
Length = 77
Score = 32.7 bits (73), Expect = 0.041
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 193 KECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAY 246
++ Y+ LG K + E++K Y LA YHPD + +K+A +F I+EAY
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR-NQGDKEA--EAKFKEIKEAY 53
>pdb|1BQ0| J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal
Fragment (Residues 1-104) Of The Molecular Chaperone
Dnaj, Nmr, 20 Structures
Length = 103
Score = 32.7 bits (73), Expect = 0.041
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 193 KECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAY 246
++ Y+ LG K + E++K Y LA YHPD + +K+A +F I+EAY
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR-NQGDKEA--EAKFKEIKEAY 53
>pdb|1XBL| Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia
Coli N-Terminal Fragment (Residues 2-108) Of The
Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 32.7 bits (73), Expect = 0.041
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 193 KECYKTLGFIKHEDFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAY 246
++ Y+ LG K + E++K Y LA YHPD + +K+A +F I+EAY
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR-NQGDKEA--EAKFKEIKEAY 53
>pdb|1UOR| X-Ray Study Of Recombinant Human Serum Albumin. Phases Determined
By Molecular Replacement Method, Using Low Resolution
Structure Model Of Tetragonal Form Of Human Serum
Albumin
pdb|1AO6|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1AO6|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1BM0|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1BM0|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1H9Z|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
R-(+) Enantiomer Of Warfarin
pdb|1HA2|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
S- (-) Enantiomer Of Warfarin
pdb|1GNJ|A Chain A, Human Serum Albumin Complexed With
Cis-5,8,11,14-Eicosatetraenoic Acid (Arachidonic Acid)
pdb|1GNI|A Chain A, Human Serum Albumin Complexed With Cis-9-Octadecenoic Acid
(Oleic Acid)
pdb|1E7A|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7A|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7G|A Chain A, Human Serum Albumin Complexed With Tetradecanoic Acid
(Myristic Acid) Human Serum Albumin Complexed With
Myristic Acid
pdb|1E7C|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
General Anesthetic Halothane
pdb|1BJ5| Human Serum Albumin Complexed With Myristic Acid
pdb|1E7I|A Chain A, Human Serum Albumin Complexed With Octadecanoic Acid
(Stearic Acid)
pdb|1E7E|A Chain A, Human Serum Albumin Complexed With Decanoic Acid (Capric
Acid)
pdb|1E7H|A Chain A, Human Serum Albumin Complexed With Hexadecanoic Acid
(Palmitic Acid)
pdb|1E7F|A Chain A, Human Serum Albumin Complexed With Dodecanoic Acid (Lauric
Acid)
pdb|1E78|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1E7B|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
pdb|1E78|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1E7B|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
Length = 585
Score = 27.3 bits (59), Expect = 1.7
Identities = 12/38 (31%), Positives = 21/38 (54%)
Query: 206 DFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQ 243
D + V K + T+H D+C L EK+ K+ A+++
Sbjct: 494 DETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVE 531
>pdb|1BKE| Human Serum Albumin In A Complex With Myristic Acid And
Tri-Iodobenzoic Acid
Length = 581
Score = 27.3 bits (59), Expect = 1.7
Identities = 12/38 (31%), Positives = 21/38 (54%)
Query: 206 DFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQ 243
D + V K + T+H D+C L EK+ K+ A+++
Sbjct: 491 DETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVE 528
>pdb|2PGD| 6-Phosphogluconate Dehydrogenase (6-Pgdh) (E.C.1.1.1.44)
pdb|1PGN| 6-Phosphogluconate Dehydrogenase (6-Pgdh) (E.C.1.1.1.44) Complexed
With Coenzyme Analogue Nicotinamide 8-Bromo-Adenine
Dinucleotide Phosphate
pdb|1PGO| 6-Phosphogluconate Dehydrogenase (6-Pgdh) (E.C.1.1.1.44) Complexed
With Reduced Coenzyme Nadph
pdb|1PGP| 6-Phosphogluconate Dehydrogenase (6-Pgdh) (E.C.1.1.1.44) Complexed
With Substrate 6-Phosphogluconic Acid
pdb|1PGQ| 6-Phosphogluconate Dehydrogenase (6-Pgdh) (E.C.1.1.1.44) Complexed
With Inhibitor 2'-Adenylic Acid (Adenosine
2'-Monophosphate)
Length = 482
Score = 25.0 bits (53), Expect = 8.6
Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 6/53 (11%)
Query: 64 ALECVHEKDISAHSLEEVLQKSHLPIRIKIM-----AQNTLLEKIEVKVLTFG 111
A E K + AHSLEE++ K P RI ++ A + +EK+ V +L G
Sbjct: 43 ANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKL-VPLLDIG 94
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 919
Score = 25.0 bits (53), Expect = 8.6
Identities = 20/81 (24%), Positives = 35/81 (42%), Gaps = 8/81 (9%)
Query: 137 FLETQDELHIRGDSERFWELIVTLNENRIVHNACLDFIYPNGFGKDSYTTMAERKLKECY 196
F + DE + +RF ++I + IV N +DF GF + ++ E
Sbjct: 726 FDKVVDEYSLNSGKQRFEKMISGMYLGEIVRNILIDFT-KKGF-------LFRGQISEPL 777
Query: 197 KTLGFIKHEDFSEVKKRYLEL 217
KT G + + S+++ L L
Sbjct: 778 KTRGIFETKFLSQIESDRLAL 798
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,405,052
Number of Sequences: 13198
Number of extensions: 54559
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 11
length of query: 253
length of database: 2,899,336
effective HSP length: 86
effective length of query: 167
effective length of database: 1,764,308
effective search space: 294639436
effective search space used: 294639436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)