BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645950|ref|NP_208129.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(174 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KAM|A Chain A, Structure Of Bacillus Subtilis Nicotini... 61 8e-11
pdb|1K4K|A Chain A, Crystal Structure Of E. Coli Nicotinic ... 56 3e-09
pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase F... 32 0.031
pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase ... 32 0.031
pdb|1AUI|A Chain A, Human Calcineurin Heterodimer 27 1.3
pdb|1TCO|A Chain A, Ternary Complex Of A Calcineurin A Frag... 27 1.3
pdb|1MF8|A Chain A, Crystal Structure Of Human Calcineurin ... 27 1.3
pdb|1M63|A Chain A, Crystal Structure Of Calcineurin-Cyclop... 27 1.3
pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nico... 27 1.7
pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase Fr... 27 1.7
pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide... 26 2.9
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic M... 25 3.8
pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adeny... 25 3.8
pdb|1G23|A Chain A, The Structural Basis Of The Catalytic M... 25 6.4
>pdb|1KAM|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|E Chain E, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|F Chain F, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
Length = 194
Score = 60.8 bits (146), Expect = 8e-11
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 11 KELALYGGSFDPLHKAHLAIIEQTLELLPSAKLIVLPAYQNPFKK-PCFLDAQTRFKELE 69
K++ ++GG+FDP H HL + + L ++ +P P K+ + D+ R + L+
Sbjct: 7 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLK 66
Query: 70 RALKGIDRVLLSDFEIKQERAVPTIESVLHFQKLYHPQTLYLVIGADCLRHLSSWTNAKE 129
A++ L E+++E T ++V ++ Y L+ +IGAD + +L W E
Sbjct: 67 LAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDE 126
Query: 130 LLKRVELVVFERIGYEEIQFKGHYHPLKGIDAP---ISSSAIR 169
LL ++ + +R G+ +PL D P +SS+ IR
Sbjct: 127 LLNLIQFIGVKRPGFH----VETPYPLLFADVPEFEVSSTMIR 165
>pdb|1K4K|A Chain A, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4K|B Chain B, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4K|C Chain C, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4K|D Chain D, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4M|A Chain A, Crystal Structure Of E.Coli Nicotinic Acid Mononucleotide
Adenylyltransferase Complexed To Deamido-Nad
pdb|1K4M|B Chain B, Crystal Structure Of E.Coli Nicotinic Acid Mononucleotide
Adenylyltransferase Complexed To Deamido-Nad
pdb|1K4M|C Chain C, Crystal Structure Of E.Coli Nicotinic Acid Mononucleotide
Adenylyltransferase Complexed To Deamido-Nad
Length = 213
Score = 55.8 bits (133), Expect = 3e-09
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 14 ALYGGSFDPLHKAHLAIIEQTLELLPSAKLIVLPAYQNPFKKPCFLDAQTRFKELERALK 73
AL+GG+FDP+H HL +E L+ ++ ++P P + ++ R LE A+
Sbjct: 6 ALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIA 65
Query: 74 GIDRVLLSDFEIKQERAVPTIESVLHFQKLYHPQT-LYLVIGADCLRHLSSWTNAKELLK 132
L + E+K+ T +++ +++ P L +IG D L +W + +L
Sbjct: 66 DKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILD 125
Query: 133 RVELVVFERIGY 144
L+V R GY
Sbjct: 126 NAHLIVCRRPGY 137
>pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
pdb|1QJC|B Chain B, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
Length = 158
Score = 32.3 bits (72), Expect = 0.031
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 14 ALYGGSFDPLHKAHLAIIEQTLELLPSAKLIVLPAYQNPFKKPCF 58
A+Y G+FDP+ H+ I+ + ++ ++L +P KKP F
Sbjct: 4 AIYPGTFDPITNGHIDIVTRATQMFDH---VILAIAASPSKKPMF 45
>pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1GN8|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1B6T|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With
3'- Dephospho-Coa From Escherichia Coli
pdb|1B6T|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With
3'- Dephospho-Coa From Escherichia Coli
Length = 159
Score = 32.3 bits (72), Expect = 0.031
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 14 ALYGGSFDPLHKAHLAIIEQTLELLPSAKLIVLPAYQNPFKKPCF 58
A+Y G+FDP+ H+ I+ + ++ ++L +P KKP F
Sbjct: 5 AIYPGTFDPITNGHIDIVTRATQMFDH---VILAIAASPSKKPMF 46
>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer
Length = 521
Score = 26.9 bits (58), Expect = 1.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 88 ERAVPTIESVLHFQ--KLYHPQTLYLVIGADCLRHLSSWTNAKELLK 132
+R +IE VL+ K+ +P+TL+L+ G RHL+ + K+ K
Sbjct: 121 DRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 167
>pdb|1TCO|A Chain A, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(Tacrolimus)
Length = 375
Score = 26.9 bits (58), Expect = 1.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 88 ERAVPTIESVLHFQ--KLYHPQTLYLVIGADCLRHLSSWTNAKELLK 132
+R +IE VL+ K+ +P+TL+L+ G RHL+ + K+ K
Sbjct: 104 DRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 150
>pdb|1MF8|A Chain A, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 373
Score = 26.9 bits (58), Expect = 1.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 88 ERAVPTIESVLHFQ--KLYHPQTLYLVIGADCLRHLSSWTNAKELLK 132
+R +IE VL+ K+ +P+TL+L+ G RHL+ + K+ K
Sbjct: 102 DRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 148
>pdb|1M63|A Chain A, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|E Chain E, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 372
Score = 26.9 bits (58), Expect = 1.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 88 ERAVPTIESVLHFQ--KLYHPQTLYLVIGADCLRHLSSWTNAKELLK 132
+R +IE VL+ K+ +P+TL+L+ G RHL+ + K+ K
Sbjct: 121 DRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 167
>pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nicotinamide
Mononucleotide Adenylyltransferase
Length = 279
Score = 26.6 bits (57), Expect = 1.7
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 4 MNSVLKYKELALYGGSFDPLHKAHLAIIEQTLELLPS------AKLIVLPAYQNPFKKPC 57
M + K + + L GSF+P+ HL + E + + K I+ P + +KK
Sbjct: 1 MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPV-GDAYKKKG 59
Query: 58 FLDAQTRFKELERALKGIDRVLLSDFEIKQERAVPTIESVLHFQK 102
+ A R E A K V + +E Q+ T++ + H Q+
Sbjct: 60 LIPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQE 104
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 26.6 bits (57), Expect = 1.7
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 51 NPFKKPCFLDAQTRFKELERALKGIDRVLLSDFEIKQERAVPTIESVLHFQKLYHPQTLY 110
N F P LDA + E+ L+ R+ L DF + A+ TI+ + K +
Sbjct: 77 NVFSMPITLDASQEVID-EKKLQAGSRITLRDFRDDRNLAILTIDDIYRPDKTKEAK--- 132
Query: 111 LVIGAD 116
LV G D
Sbjct: 133 LVFGGD 138
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 25.8 bits (55), Expect = 2.9
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 9 KYKELALYGGSFDPLHKAHLAIIEQTLELLPS------AKLIVLPAYQNPFKKPCFLDAQ 62
K + + L GSF+P+ HL + E + K I+ P + +KK + A
Sbjct: 17 KTEVVLLACGSFNPITNXHLRLFELAKDYXNGTGRYTVVKGIISPV-GDAYKKKGLIPAY 75
Query: 63 TRFKELERALKGIDRVLLSDFEIKQERAVPTIESVLHFQK 102
R E A K V + +E Q+ T++ + H Q+
Sbjct: 76 HRVIXAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQE 115
>pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE-1-Phosphate Complex.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE-1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE-1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE-1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE-1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE-1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE-1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE-1-Phosphate Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex
Length = 293
Score = 25.4 bits (54), Expect = 3.8
Identities = 17/45 (37%), Positives = 21/45 (45%), Gaps = 11/45 (24%)
Query: 8 LKYKELALYGGSFDPLHKAHLAIIEQTLELLPSAKLIVLPAYQNP 52
+K K + L GGS LH A LAI +Q +LP Y P
Sbjct: 1 MKRKGIILAGGSGTRLHPATLAISKQ-----------LLPVYDKP 34
>pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|D Chain D, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|E Chain E, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|A Chain A, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|B Chain B, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|C Chain C, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
Length = 168
Score = 25.4 bits (54), Expect = 3.8
Identities = 9/19 (47%), Positives = 12/19 (62%)
Query: 18 GSFDPLHKAHLAIIEQTLE 36
G F P HK HL +I++ E
Sbjct: 7 GRFQPFHKGHLEVIKKIAE 25
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 24.6 bits (52), Expect = 6.4
Identities = 17/44 (38%), Positives = 20/44 (44%), Gaps = 11/44 (25%)
Query: 9 KYKELALYGGSFDPLHKAHLAIIEQTLELLPSAKLIVLPAYQNP 52
K K + L GGS LH A LAI +Q +LP Y P
Sbjct: 2 KRKGIILAGGSGTRLHPATLAISKQ-----------LLPVYDKP 34
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 959,056
Number of Sequences: 13198
Number of extensions: 35663
Number of successful extensions: 114
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 14
length of query: 174
length of database: 2,899,336
effective HSP length: 82
effective length of query: 92
effective length of database: 1,817,100
effective search space: 167173200
effective search space used: 167173200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)