BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645951|ref|NP_208130.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(148 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ESL| E-Selectin (Lectin And Egf Domains, Residues 1 ... 24 6.3
pdb|1BMV|2 Chain 2, Bean Pod Mottle Virus (Middle Component) 24 6.3
pdb|1YTT|A Chain A, Yb Substituted Subtilisin Fragment Of M... 24 6.3
pdb|1BUU|A Chain A, One Ho3+ Form Of Rat Mannose-Binding Pr... 24 6.3
pdb|1B08|A Chain A, Lung Surfactant Protein D (Sp-D) (Fragm... 24 6.3
pdb|1KWT|A Chain A, Rat Mannose Binding Protein A (Native, ... 24 6.3
pdb|1IM0|A Chain A, Outer Membrane Phospholipase A From Esc... 24 6.3
pdb|1FW3|A Chain A, Outer Membrane Phospholipase A From Esc... 24 6.3
pdb|1QD5|A Chain A, Outer Membrane Phospholipase A From Esc... 24 6.3
pdb|3KMB|1 Chain 1, Complex Of 3'-Sulfo-Lewis-X With A Sele... 24 6.3
pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinE... 24 6.3
pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complex... 24 8.2
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinE... 24 8.2
>pdb|1ESL| E-Selectin (Lectin And Egf Domains, Residues 1 - 157) (Formerly
Known As Elam-1)
Length = 162
Score = 24.3 bits (51), Expect = 6.3
Identities = 17/63 (26%), Positives = 26/63 (40%), Gaps = 4/63 (6%)
Query: 53 NWAEDNPNDESKIAVLVVIYDHHQREL----NQRMIDIQHASGTHVLCTTHIHMDEHNCL 108
NWA PN+ K V IY ++++ ++R + A CT C+
Sbjct: 75 NWAPGEPNNRQKDEDCVEIYIKREKDVGMWNDERCSKKKLALCYTAACTNTSCSGHGECV 134
Query: 109 ETI 111
ETI
Sbjct: 135 ETI 137
>pdb|1BMV|2 Chain 2, Bean Pod Mottle Virus (Middle Component)
Length = 374
Score = 24.3 bits (51), Expect = 6.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 114 QGNSFEIQRLQLEIGGLRGVKFAKL 138
QG S ++R+ L IGG G K A L
Sbjct: 204 QGTSRSVKRMPLSIGGGAGAKSAIL 228
>pdb|1YTT|A Chain A, Yb Substituted Subtilisin Fragment Of Mannose Binding
Protein-A (Sub-Mbp-A), Mad Structure At 110k
pdb|1MSB|A Chain A, Mannose Binding Protein A (Lectin Domain) Complex With
Holmium
pdb|1MSB|B Chain B, Mannose Binding Protein A (Lectin Domain) Complex With
Holmium
pdb|2MSB|B Chain B, Mannose-Binding Protein A (Lectin Domain) Complex With
Calcium And Glycopeptide
pdb|1YTT|B Chain B, Yb Substituted Subtilisin Fragment Of Mannose Binding
Protein-A (Sub-Mbp-A), Mad Structure At 110k
pdb|2MSB|A Chain A, Mannose-Binding Protein A (Lectin Domain) Complex With
Calcium And Glycopeptide
Length = 115
Score = 24.3 bits (51), Expect = 6.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 48 KLVEDNWAEDNPNDESKIAVLVVIYDH 74
+L NW +D PND V I D+
Sbjct: 69 RLTYSNWKKDEPNDHGSGEDCVTIVDN 95
>pdb|1BUU|A Chain A, One Ho3+ Form Of Rat Mannose-Binding Protein A
Length = 168
Score = 24.3 bits (51), Expect = 6.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 48 KLVEDNWAEDNPNDESKIAVLVVIYDH 74
+L NW +D PND V I D+
Sbjct: 122 RLTYSNWKKDEPNDHGSGEDCVTIVDN 148
>pdb|1B08|A Chain A, Lung Surfactant Protein D (Sp-D) (Fragment)
pdb|1B08|B Chain B, Lung Surfactant Protein D (Sp-D) (Fragment)
pdb|1B08|C Chain C, Lung Surfactant Protein D (Sp-D) (Fragment)
Length = 158
Score = 24.3 bits (51), Expect = 6.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 47 EKLVEDNWAEDNPNDE 62
E LV NWA PND+
Sbjct: 113 ESLVYSNWAPGEPNDD 128
>pdb|1KWT|A Chain A, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWT|B Chain B, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWT|C Chain C, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWU|A Chain A, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWU|B Chain B, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWU|C Chain C, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWV|A Chain A, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWV|B Chain B, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWV|C Chain C, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWW|A Chain A, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWW|B Chain B, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWW|C Chain C, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWX|A Chain A, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWX|B Chain B, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWX|C Chain C, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWY|A Chain A, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KWY|B Chain B, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KWY|C Chain C, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KX1|A Chain A, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|B Chain B, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|C Chain C, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|D Chain D, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|E Chain E, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|F Chain F, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1RTM|1 Chain 1, Mannose-Binding Protein A (Clostripain Fragment)
(Cl-Mbp-A)
pdb|1RTM|2 Chain 2, Mannose-Binding Protein A (Clostripain Fragment)
(Cl-Mbp-A)
pdb|1RTM|3 Chain 3, Mannose-Binding Protein A (Clostripain Fragment)
(Cl-Mbp-A)
Length = 149
Score = 24.3 bits (51), Expect = 6.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 48 KLVEDNWAEDNPNDESKIAVLVVIYDH 74
+L NW +D PND V I D+
Sbjct: 103 RLTYSNWKKDEPNDHGSGEDCVTIVDN 129
>pdb|1IM0|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
N156a Active Site Mutant Ph 8.3
pdb|1ILZ|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
N156a Active Site Mutant Ph 6.1
pdb|1ILD|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
N156a Active Site Mutant Ph 4.6
Length = 275
Score = 24.3 bits (51), Expect = 6.3
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 3/52 (5%)
Query: 16 SLQQNLLDELDNRIIKNGYSSRSEL---VRDMIREKLVEDNWAEDNPNDESK 64
S+ N+L E DN Y + + D+ +E + +WAE+ DE K
Sbjct: 23 SIIANMLQEHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVK 74
>pdb|1FW3|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW3|B Chain B, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 24.3 bits (51), Expect = 6.3
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 3/52 (5%)
Query: 16 SLQQNLLDELDNRIIKNGYSSRSEL---VRDMIREKLVEDNWAEDNPNDESK 64
S+ N+L E DN Y + + D+ +E + +WAE+ DE K
Sbjct: 23 SIIANMLQEHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVK 74
>pdb|1QD5|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW2|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 24.3 bits (51), Expect = 6.3
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 3/52 (5%)
Query: 16 SLQQNLLDELDNRIIKNGYSSRSEL---VRDMIREKLVEDNWAEDNPNDESK 64
S+ N+L E DN Y + + D+ +E + +WAE+ DE K
Sbjct: 23 SIIANMLQEHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVK 74
>pdb|3KMB|1 Chain 1, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|3KMB|2 Chain 2, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|3KMB|3 Chain 3, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|2KMB|1 Chain 1, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|2KMB|2 Chain 2, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|2KMB|3 Chain 3, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|1 Chain 1, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|2 Chain 2, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|3 Chain 3, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|1KMB|1 Chain 1, Selectin-Like Mutant Of Mannose-Binding Protein A
pdb|1KMB|2 Chain 2, Selectin-Like Mutant Of Mannose-Binding Protein A
pdb|1KMB|3 Chain 3, Selectin-Like Mutant Of Mannose-Binding Protein A
Length = 149
Score = 24.3 bits (51), Expect = 6.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 48 KLVEDNWAEDNPNDESKIAVLVVIYDH 74
+L NW +D PND V I D+
Sbjct: 103 RLTYSNWKKDEPNDHGSGEDCVTIVDN 129
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 24.3 bits (51), Expect = 6.3
Identities = 17/63 (26%), Positives = 26/63 (40%), Gaps = 4/63 (6%)
Query: 53 NWAEDNPNDESKIAVLVVIYDHHQREL----NQRMIDIQHASGTHVLCTTHIHMDEHNCL 108
NWA PN+ K V IY ++++ ++R + A CT C+
Sbjct: 75 NWAPGEPNNRQKDEDCVEIYIKREKDVGMWNDERCSKKKLALCYTAACTNTSCSGHGECV 134
Query: 109 ETI 111
ETI
Sbjct: 135 ETI 137
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 23.9 bits (50), Expect = 8.2
Identities = 19/87 (21%), Positives = 37/87 (41%), Gaps = 12/87 (13%)
Query: 34 YSSRSELVRDMIREKLVE-DNWAEDNPNDESKIAVLVVIYDHHQRELNQ----RMIDIQH 88
Y +R++L +++ K + D E P+ + L+ +ELN +++D+ H
Sbjct: 19 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLL-------KELNHPNIVKLLDVIH 71
Query: 89 ASGTHVLCTTHIHMDEHNCLETIILQG 115
L H+H D ++ L G
Sbjct: 72 TENKLYLVFEHVHQDLKTFMDASALTG 98
>pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-Selectin LectinEGF DOMAINS COMPLEXED WITH PSGL-1 Peptide
pdb|1G1S|B Chain B, P-Selectin LectinEGF DOMAINS COMPLEXED WITH PSGL-1 Peptide
Length = 162
Score = 23.9 bits (50), Expect = 8.2
Identities = 19/65 (29%), Positives = 26/65 (39%), Gaps = 6/65 (9%)
Query: 52 DNWAEDNPNDESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMD-----EHN 106
+NWA++ PN++ V IY + D H LC T D +
Sbjct: 74 ENWADNEPNNKRNNEDCVEIY-IKSPSAPGKWNDEHCLKKKHALCYTASCQDMSCSKQGE 132
Query: 107 CLETI 111
CLETI
Sbjct: 133 CLETI 137
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 823,364
Number of Sequences: 13198
Number of extensions: 30421
Number of successful extensions: 83
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 13
length of query: 148
length of database: 2,899,336
effective HSP length: 80
effective length of query: 68
effective length of database: 1,843,496
effective search space: 125357728
effective search space used: 125357728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)