BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645953|ref|NP_208132.1| biopolymer transport
protein (exbD) [Helicobacter pylori 26695]
(129 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QLS|A Chain A, S100c (S100a11),Or Calgizzarin, In Comp... 28 0.25
pdb|1INY| Influenza A Subtype N9 Neuraminidase (Sialidase... 26 1.3
pdb|6NN9| Neuraminidase N9 (E.C.3.2.1.18) (Sialidase) (Mu... 26 1.6
pdb|1NNA| Neuraminidase (Sialidase) (E.C.3.2.1.18) >gi|51... 26 1.6
pdb|1L7H|A Chain A, Crystal Structure Of R292k Mutant Influ... 26 1.6
pdb|3NN9| Neuraminidase N9 (E.C.3.2.1.18) (Sialidase) (Mu... 26 1.6
pdb|1NCA|N Chain N, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Co... 26 1.6
pdb|1L7G|A Chain A, Crystal Structure Of E119g Mutant Influ... 26 1.6
pdb|1L7F|A Chain A, Crystal Structure Of Influenza Virus Ne... 26 1.6
pdb|1NCB|N Chain N, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Mu... 26 1.6
pdb|5NN9| Neuraminidase N9 (E.C.3.2.1.18) (Sialidase) (Mu... 25 2.1
pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Ce... 25 3.7
pdb|4NN9| Neuraminidase N9 (E.C.3.2.1.18) (Sialidase) (Mu... 25 3.7
pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Anti... 25 3.7
pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin ... 25 3.7
pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A... 25 3.7
pdb|1NMA|N Chain N, Mol_id: 1; Molecule: N9 Neuraminidase; ... 25 3.7
pdb|1FRD| Heterocyst [2fe-2s] Ferredoxin (Oxidized, Recom... 25 3.7
pdb|1NCC|N Chain N, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Mu... 25 3.7
pdb|1APA| X-Ray Structure Of A Pokeweed Antiviral Protein... 25 3.7
pdb|1PFD| The Solution Structure Of High Plant Parsley [2... 24 4.8
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex >g... 24 6.2
pdb|1K9I|D Chain D, Complex Of Dc-Sign And Glcnac2man3 >gi|... 24 6.2
pdb|1NMB|N Chain N, Mol_id: 1; Molecule: N9 Neuraminidase; ... 23 8.1
pdb|1NCD|N Chain N, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Co... 23 8.1
pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexe... 23 8.1
>pdb|1QLS|A Chain A, S100c (S100a11),Or Calgizzarin, In Complex With Annexin I
N-Terminus
Length = 99
Score = 28.5 bits (62), Expect = 0.25
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 6/58 (10%)
Query: 76 MNLEALSAVVKQTDPKTL------IDLKSDKSSRFETFISIMDILKEHNHENFSISTQ 127
MN E + Q DP L +DL SD F+ F++++ L H++F STQ
Sbjct: 41 MNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLAIACHDSFIKSTQ 98
>pdb|1INY| Influenza A Subtype N9 Neuraminidase (Sialidase) (E.C.3.2.1.18)
Complexed With Epana Inhibitor (4-Acetamido-
2,4-Dideoxy-D-Glycero-Alpha-D-Galacto-1-Octopyranosyl)
Phosphonic Acid
Length = 388
Score = 26.2 bits (56), Expect = 1.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 28 SISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+IS + G + +PNA +KS+P + +V++ D
Sbjct: 284 TISIALRSGYEMLKVPNALTDDKSKPTQGQTIVLNTD 320
>pdb|6NN9| Neuraminidase N9 (E.C.3.2.1.18) (Sialidase) (Mutant With Lys 432
Replaced By Asn) (K432N)
Length = 388
Score = 25.8 bits (55), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 DGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+G+ ++D + L +SI++ +KV PNA +KS+P + +V++ D
Sbjct: 266 NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTD 320
>pdb|1NNA| Neuraminidase (Sialidase) (E.C.3.2.1.18)
pdb|1NNB| Neuraminidase (Sialidase) (E.C.3.2.1.18) Complexed With
2-Deoxy-2,3-Dehydro-N-Acetyl Neuraminic Acid
Length = 387
Score = 25.8 bits (55), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 DGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+G+ ++D + L +SI++ +KV PNA +KS+P + +V++ D
Sbjct: 265 NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTD 319
>pdb|1L7H|A Chain A, Crystal Structure Of R292k Mutant Influenza Virus
Neuraminidase In Complex With Bcx-1812
pdb|2QWC| The X-Ray Structure Of A Complex Of Neu5ac2en And A Drug Resistant
Variant R292k Of Tern N9 Influenza Virus Neuraminidase
pdb|2QWA| The X-Ray Structure Of A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWG| The X-Ray Structure Of A Complex Of 5-N-Acetyl-4-Amino-6-
Diethylcarboxamide-4,5-Dihydro-2h-Pyran-2-Carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWH| The X-Ray Structure Of A Complex Of 5-N-Acetyl-5-Amino-3-
(1-Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid
(Gs4071) And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWF| The X-Ray Structure Of A Complex Of N-Acetyl-4-Guanidino-6-
Methyl(Propyl)carboxamide-4,
5-Dihydro-2h-Pyran-2-Carboxylic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWB| The X-Ray Structure Of A Complex Of Sialic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWD| The X-Ray Structure Of A Complex Of 4-Amino-Neu5ac2en And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWE| The X-Ray Structure Of A Complex Of 4-Guanidino-Neu5ac2en And A
Drug Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
Length = 388
Score = 25.8 bits (55), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 DGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+G+ ++D + L +SI++ +KV PNA +KS+P + +V++ D
Sbjct: 266 NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTD 320
>pdb|3NN9| Neuraminidase N9 (E.C.3.2.1.18) (Sialidase) (Mutant With Asn 329
Replaced By Asp) (N329D)
Length = 388
Score = 25.8 bits (55), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 DGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+G+ ++D + L +SI++ +KV PNA +KS+P + +V++ D
Sbjct: 266 NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTD 320
>pdb|1NCA|N Chain N, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Complex With Fab
Length = 389
Score = 25.8 bits (55), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 DGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+G+ ++D + L +SI++ +KV PNA +KS+P + +V++ D
Sbjct: 267 NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTD 321
>pdb|1L7G|A Chain A, Crystal Structure Of E119g Mutant Influenza Virus
Neuraminidase In Complex With Bcx-1812
Length = 388
Score = 25.8 bits (55), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 DGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+G+ ++D + L +SI++ +KV PNA +KS+P + +V++ D
Sbjct: 266 NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTD 320
>pdb|1L7F|A Chain A, Crystal Structure Of Influenza Virus Neuraminidase In
Complex With Bcx-1812
pdb|1F8D|A Chain A, Native Influenza Neuraminidase In Complex With 9-Amino-2-
Deoxy-2,3-Dehydro-N-Neuraminic Acid
pdb|1F8E|A Chain A, Native Influenza Neuraminidase In Complex With
4,9-Diamino- 2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic
Acid
pdb|1MWE| The X-Ray Structure Of A Complex Of Tern N9 Influenza Virus
Neuraminidase Complexed With Sialic Acid At 4 Degrees C
Revealing A Second Sialic Acid Binding Site
pdb|1F8C|A Chain A, Native Influenza Neuraminidase In Complex With 4-Amino-2-
Deoxy-2,3-Dehydro-N-Neuraminic Acid
pdb|1F8B|A Chain A, Native Influenza Virus Neuraminidase In Complex With
Neu5ac2en
pdb|2QWK| The X-Ray Structure Of A Complex Of 5-N-Acetyl-5-Amino-3-
(1-Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid
(Gs4071) And Wildtype Tern N9 Influenza Virus
Neuraminidase
pdb|1NNC| Influenza Virus Neuraminidase Subtype N9 (Tern) Complexed With
4-Guanidino-Neu5ac2en Inhibitor
pdb|2QWJ| The X-Ray Structure Of A Complex Of 5-N-Acetyl-4-Amino-6-
Diethylcarboxamide-4,5-Dihydro-2h-Pyran-2-Carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|1BJI| The X-Ray Structure Of A Complex Of Tern N9 Influenza Virus
Neuraminidase Complexed With The Glaxo 6-Carboxamide
Sialic Acid Analogue Gr217029
pdb|2QWI| The X-Ray Structure Of A Complex Of N-Acetyl-4-Guanidino-6-
Methyl(Propyl)carboxamide-4,
5-Dihydro-2h-Pyran-2-Carboxylic Acid And Wildtype Tern
N9 Influenza Virus Neuraminidase
pdb|7NN9| Native Influenza Virus Neuraminidase Subtype N9 (Tern)
pdb|1NMC|A Chain A, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1NMC|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1A14|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 5 Residue Linker And
Influenza Virus Neuraminidase
Length = 388
Score = 25.8 bits (55), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 DGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+G+ ++D + L +SI++ +KV PNA +KS+P + +V++ D
Sbjct: 266 NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTD 320
>pdb|1NCB|N Chain N, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Mutant With Asn 329
Replaced By Asp (N329d) Complex With Fab
Length = 389
Score = 25.8 bits (55), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 DGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+G+ ++D + L +SI++ +KV PNA +KS+P + +V++ D
Sbjct: 267 NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTD 321
>pdb|5NN9| Neuraminidase N9 (E.C.3.2.1.18) (Sialidase) (Mutant With Ala 369
Replaced By Asp) (A369D)
Length = 388
Score = 25.4 bits (54), Expect = 2.1
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 8 DGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+G+ ++D + L +SI + +KV PNA +KS+P + +V++ D
Sbjct: 266 NGVKGFSYLDGVNTWLGRTISIDSRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTD 320
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 24.6 bits (52), Expect = 3.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 70 FVDDKPMNLEALSAVVKQTDPKTLIDLKSDKSSRFET 106
++ D P EA+ AV+ PK L++L S +S+ +T
Sbjct: 195 YLSDGPQ--EAIQAVIDVRIPKRLVELLSHESTLVQT 229
>pdb|4NN9| Neuraminidase N9 (E.C.3.2.1.18) (Sialidase) (Mutant With Ile 368
Replaced By Arg) (I368R)
Length = 388
Score = 24.6 bits (52), Expect = 3.7
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 28 SISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+IS G + +PNA +KS+P + +V++ D
Sbjct: 284 TISRASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTD 320
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 24.6 bits (52), Expect = 3.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 70 FVDDKPMNLEALSAVVKQTDPKTLIDLKSDKSSRFET 106
++ D P EA+ AV+ PK L++L S +S+ +T
Sbjct: 195 YLSDGPQ--EAIQAVIDVRIPKRLVELLSHESTLVQT 229
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 24.6 bits (52), Expect = 3.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 70 FVDDKPMNLEALSAVVKQTDPKTLIDLKSDKSSRFET 106
++ D P EA+ AV+ PK L++L S +S+ +T
Sbjct: 197 YLSDGPQ--EAIQAVIDVRIPKRLVELLSHESTLVQT 231
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 24.6 bits (52), Expect = 3.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 70 FVDDKPMNLEALSAVVKQTDPKTLIDLKSDKSSRFET 106
++ D P EA+ AV+ PK L++L S +S+ +T
Sbjct: 197 YLSDGPQ--EAIQAVIDVRIPKRLVELLSHESTLVQT 231
>pdb|1NMA|N Chain N, Mol_id: 1; Molecule: N9 Neuraminidase; Chain: N; Ec:
3.2.1.18; Mutation: Wild Type; Mol_id: 2; Molecule: Fab
Nc10; Chain: L, H; Other_details: Resolution Of 3.0
Angstroms
Length = 388
Score = 24.6 bits (52), Expect = 3.7
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 28 SISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+IS G + +PNA +KS+P + +V++ D
Sbjct: 284 TISIASRSGYEMLKVPNALTDDKSRPTQGQTIVLNTD 320
>pdb|1FRD| Heterocyst [2fe-2s] Ferredoxin (Oxidized, Recombinant Form)
Length = 98
Score = 24.6 bits (52), Expect = 3.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 57 KVVVISVDEHDNIFVDDKPM 76
KVV VD+ D IF+DD+ M
Sbjct: 52 KVVEGEVDQSDQIFLDDEQM 71
>pdb|1NCC|N Chain N, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Mutant With Ile 368
Replaced By Arg (I368r) Complex With Fab
Length = 389
Score = 24.6 bits (52), Expect = 3.7
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 28 SISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+IS G + +PNA +KS+P + +V++ D
Sbjct: 285 TISRASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTD 321
>pdb|1APA| X-Ray Structure Of A Pokeweed Antiviral Protein, Coded By A New
Genomic Clone, At 0.23 Nm Resolution. A Model Structure
Provides A Suitable Electrostatic Field For Substrate
Binding
Length = 266
Score = 24.6 bits (52), Expect = 3.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 36 GKIKVSLPNAKNAEKSQP------NDQKVVVISVDE 65
GKI ++ NAKN + P N K +V+ VD+
Sbjct: 213 GKISTAIHNAKNGALTSPLELKNANGSKWIVLRVDD 248
>pdb|1PFD| The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 24.3 bits (51), Expect = 4.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 40 VSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPMN 77
+ +P + A KVV S+D+ D F+DD+ M+
Sbjct: 33 IDIPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMD 70
>pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1224
Score = 23.9 bits (50), Expect = 6.2
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 33 IAQGKIKVSLP--NAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPMNLEALSAVVKQTDP 90
I+ GKI V+ P N + Q+ + ++ +FVD K EA+ ++
Sbjct: 90 ISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKY 149
Query: 91 KTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQA 128
+ + + D S + FI + I+ + S +T++
Sbjct: 150 ELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATES 187
>pdb|1K9I|D Chain D, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|A Chain A, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|B Chain B, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|C Chain C, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|E Chain E, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|F Chain F, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|G Chain G, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|I Chain I, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|J Chain J, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|H Chain H, Complex Of Dc-Sign And Glcnac2man3
Length = 156
Score = 23.9 bits (50), Expect = 6.2
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 84 VVKQTDPKTLIDLKSDKSSRFETFISIMDILKE 116
V+K + + + L+S +S+RF T++ + D+ +E
Sbjct: 45 VIKSAEEQNFLQLQSSRSNRF-TWMGLSDLNQE 76
>pdb|1NMB|N Chain N, Mol_id: 1; Molecule: N9 Neuraminidase; Chain: N; Ec:
3.2.1.18; Mutation: Wild Type; Mol_id: 2; Molecule: Fab
Nc10; Chain: L, H; Other_details: Resolution Of 2.5
Angstroms
Length = 470
Score = 23.5 bits (49), Expect = 8.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 28 SISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+IS G + +PNA ++S+P + +V++ D
Sbjct: 366 TISIASRSGYEMLKVPNALTDDRSKPTQGQTIVLNTD 402
>pdb|1NCD|N Chain N, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Complex With Fab
Length = 389
Score = 23.5 bits (49), Expect = 8.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 28 SISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVD 64
+IS G + +PNA ++S+P + +V++ D
Sbjct: 285 TISIASRSGYEMLKVPNALTDDRSKPTQGQTIVLNTD 321
>pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|H Chain H, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|B Chain B, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|F Chain F, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|G Chain G, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|C Chain C, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|E Chain E, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|D Chain D, Crystal Structure Of The Mrp14 Complexed With Chaps
Length = 113
Score = 23.5 bits (49), Expect = 8.1
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 94 IDLKSDKSSRFETFISIMDILKEHNHE 120
+D +DK FE FI +M L +HE
Sbjct: 65 LDTNADKQLSFEEFIMLMARLTWASHE 91
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.133 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 607,528
Number of Sequences: 13198
Number of extensions: 19619
Number of successful extensions: 68
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 26
length of query: 129
length of database: 2,899,336
effective HSP length: 78
effective length of query: 51
effective length of database: 1,869,892
effective search space: 95364492
effective search space used: 95364492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)