BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645954|ref|NP_208133.1| siderophore-mediated iron
transport protein (tonB) [Helicobacter pylori 26695]
(285 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LD4|A Chain A, Placement Of The Structural Proteins In... 43 5e-05
pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase Holoen... 42 6e-05
pdb|1KXF| Sindbis Virus Capsid, (Wild-Type) Residues 1-26... 40 4e-04
pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 I... 32 0.11
pdb|1IHR|B Chain B, Crystal Structure Of The Dimeric C-Term... 31 0.14
pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 >gi|241587... 31 0.14
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 31 0.19
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 31 0.19
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 31 0.19
pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain... 28 0.92
pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrol... 28 0.92
pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Comp... 28 0.92
pdb|1RGP| Gtpase-Activation Domain From Rhogap 28 0.92
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 28 1.2
pdb|1L2N|A Chain A, Smt3 Solution Structure 28 1.2
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed W... 28 1.2
pdb|1HHN|A Chain A, Calreticulin P-Domain 28 1.6
pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed Wit... 27 2.0
pdb|1BN5| Human Methionine Aminopeptidase 2 >gi|5821858|p... 27 2.0
pdb|1JVR| Structure Of The Htlv-Ii Matrix Protein, Nmr, 2... 26 4.6
pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycini... 26 4.6
pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Do... 26 6.0
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 26 6.0
pdb|1B43|A Chain A, Fen-1 From P. Furiosus >gi|6980605|pdb|... 25 7.8
pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride C... 25 7.8
>pdb|1LD4|A Chain A, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|B Chain B, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|C Chain C, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|D Chain D, Placement Of The Structural Proteins In Sindbis Virus
Length = 264
Score = 42.7 bits (99), Expect = 5e-05
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 6/54 (11%)
Query: 94 EVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEP-KEEPKKEE 146
+ T+P+P P+P+P P+ K K PK PKP+ +PK +E KK++P K +P K +
Sbjct: 56 QATRPQP-PRPRPPPRQK-KQAPKQPPKPK---KPKTQEKKKKQPAKPKPGKRQ 104
Score = 36.6 bits (83), Expect = 0.003
Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 29 GFGYFLLREDAPEPLA--------QAGTTKVTMSLASINTNSNTKTNAESAKPKEEPKEK 80
GF L R P P A QA LAS T +A P +
Sbjct: 4 GFFNMLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRP-QP 62
Query: 81 PKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEP-KPEPKPEPKPEPKVEEVKKEEPK 139
P+ P ++ KK+ K PKPK KPK + K K +P KP+P + K+E + + K
Sbjct: 63 PRPRPPPRQ--KKQAPKQPPKPK-KPKTQEKKKKQPAKPKPGKRQRMALKLEADRLFDVK 119
Query: 140 EE 141
E
Sbjct: 120 NE 121
Score = 33.1 bits (74), Expect = 0.037
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 113 KPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAP 157
+P+P P+P P P KK+ PK+ PK ++ K + K+K P
Sbjct: 59 RPQP---PRPRPPPRQ-----KKQAPKQPPKPKKPKTQEKKKKQP 95
Score = 33.1 bits (74), Expect = 0.037
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 3/49 (6%)
Query: 111 KPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAPKQ 159
+P+P P+P P P K + + K ++PK + KK+ K+ AK K +Q
Sbjct: 59 RPQP-PRPRPPPRQKKQAPKQPPKPKKPKTQEKKK--KQPAKPKPGKRQ 104
>pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 438
Score = 42.4 bits (98), Expect = 6e-05
Identities = 31/98 (31%), Positives = 52/98 (52%), Gaps = 5/98 (5%)
Query: 75 EEPKEKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPE-PKPEPKPEPKVEEV 133
++ K K K + ++ E K+ V +P+P P+ + + PEP PE EP+ E + +
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPL 61
Query: 134 KKEEPKEE---PKKEEAKEEAKEKSAPKQVTTKDIVKE 168
E P E P++ +EE +E S PK V+T D V++
Sbjct: 62 DLEGPLEADLLPEEGLLEEEEEELSLPK-VSTSDPVRQ 98
>pdb|1KXF| Sindbis Virus Capsid, (Wild-Type) Residues 1-264, Tetragonal
Crystal Form (Form Ii)
Length = 264
Score = 39.7 bits (91), Expect = 4e-04
Identities = 22/53 (41%), Positives = 35/53 (65%), Gaps = 4/53 (7%)
Query: 94 EVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEE 146
+ T+P+ P+P+P P+ K K PK PKP+ KP+P+ E+ KK+ K +P K +
Sbjct: 56 QATRPQ-NPRPRPPPRQK-KQAPKQPPKPK-KPKPQ-EKKKKQPAKTKPGKRQ 104
Score = 37.0 bits (84), Expect = 0.003
Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 29 GFGYFLLREDAPEPLA--------QAGTTKVTMSLASINTNSNTKTNAESAKPKEEPKEK 80
GF L R P P A QA LAS T +A P +
Sbjct: 4 GFFNMLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRP-QN 62
Query: 81 PKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEP-KPEPKPEPKPEPKVEEVKKEEPK 139
P+ P ++ KK+ K PKPK KPKP+ K K +P K +P + K+E + + K
Sbjct: 63 PRPRPPPRQ--KKQAPKQPPKPK-KPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVK 119
Query: 140 EE 141
E
Sbjct: 120 NE 121
Score = 31.6 bits (70), Expect = 0.11
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 118 PEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAP 157
P P+P P+ KK+ PK+ PK ++ K + K+K P
Sbjct: 63 PRPRPPPRQ-------KKQAPKQPPKPKKPKPQEKKKKQP 95
Score = 31.2 bits (69), Expect = 0.14
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 116 PKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAPKQ 159
P+P P P K + + K ++PK + KK+ K+ AK K +Q
Sbjct: 63 PRPRPPPRQKKQAPKQPPKPKKPKPQEKKK--KQPAKTKPGKRQ 104
>pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 In Complex With Its
Inhibitor Im7 Protein
Length = 206
Score = 31.6 bits (70), Expect = 0.11
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
Query: 44 AQAGTTKVTMSLASINTNSNTKTNAESAKPK--EEPKEKPKKEEPKKEEPKKEVTKPKP- 100
AQ T V A+ + + K++A+ A E K+K KE+ K + KE + KP
Sbjct: 22 AQRAQTDVNNKKAAFDAAAKEKSDADVALSSALERRKQKENKEKDAKAKLDKESKRNKPG 81
Query: 101 KPKPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPK--EEPKKEEAKEEAKEKSAPK 158
K K KP + P P+ +++ +E K ++ +K+ +E +K+ K
Sbjct: 82 KATGKGKPVNNKWLNNAGKDLGSPVPDRIANKLRDKEFKSFDDFRKKFWEEVSKDPELSK 141
Query: 159 QVTTKDIVKEKDKQEESNKTSE 180
Q + + + K + +T +
Sbjct: 142 QFSRNNNDRMKVGKAPKTRTQD 163
>pdb|1IHR|B Chain B, Crystal Structure Of The Dimeric C-Terminal Domain Of Tonb
pdb|1IHR|A Chain A, Crystal Structure Of The Dimeric C-Terminal Domain Of Tonb
Length = 76
Score = 31.2 bits (69), Expect = 0.14
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 212 PKMAQIRGIEGEVLVSFTINADGSVTDIKVVKSNTTDILNHAALEAIKSAAHLFPKPEET 271
P AQ IEG+V V F + DG V +++++ + ++ A++ + KP
Sbjct: 1 PARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSG 60
Query: 272 VHLKI 276
+ + I
Sbjct: 61 IVVNI 65
>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2
pdb|1KWP|B Chain B, Crystal Structure Of Mapkap2
Length = 400
Score = 31.2 bits (69), Expect = 0.14
Identities = 12/29 (41%), Positives = 14/29 (47%)
Query: 100 PKPKPKPKPKPKPKPEPKPEPKPEPKPEP 128
P P P P P P+P P P +P P P
Sbjct: 11 PVPFPAPAPPPQPPTPALPHPPAQPPPPP 39
Score = 30.0 bits (66), Expect = 0.32
Identities = 12/29 (41%), Positives = 14/29 (47%)
Query: 98 PKPKPKPKPKPKPKPKPEPKPEPKPEPKP 126
P P P P P P+P P P +P P P
Sbjct: 11 PVPFPAPAPPPQPPTPALPHPPAQPPPPP 39
Score = 26.9 bits (58), Expect = 2.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 89 EEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVE---EVKK 135
+ P P P P+P P P +P P P P+ P+ V+ ++KK
Sbjct: 8 QSPPVPFPAPAPPPQPPTPALPHPPAQP-PPPPPQQFPQFHVKSGLQIKK 56
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 30.8 bits (68), Expect = 0.19
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 72 KPKEEPKEKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVE 131
K K+ P+ KK++PKKEE +K + + K K P P EP PE
Sbjct: 8 KDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKF 67
Query: 132 EVKKEEPKEEPKKEEAKEEAKEKSAPKQVTTKDIVKE---KDKQEE 174
+ K PK EE K + TTK+I ++ KD ++E
Sbjct: 68 YYDGKVMKLSPKAEEV-ATFFAKMLDHEYTTKEIFRKNFFKDWRKE 112
Score = 29.3 bits (64), Expect = 0.54
Identities = 19/51 (37%), Positives = 24/51 (46%)
Query: 107 KPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAP 157
KPK K K + PEP + K K EE K + +EE E K + E P
Sbjct: 2 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGP 52
Score = 27.3 bits (59), Expect = 2.0
Identities = 18/44 (40%), Positives = 22/44 (49%), Gaps = 5/44 (11%)
Query: 103 KPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEE 146
KPK K K K PEP K +PK EE +K + EE + E
Sbjct: 2 KPKNKDKDKKVPEP-----DNKKKKPKKEEEQKWKWWEEERYPE 40
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 30.8 bits (68), Expect = 0.19
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 72 KPKEEPKEKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVE 131
K K+ P+ KK++PKKEE +K + + K K P P EP PE
Sbjct: 7 KDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKF 66
Query: 132 EVKKEEPKEEPKKEEAKEEAKEKSAPKQVTTKDIVKE---KDKQEE 174
+ K PK EE K + TTK+I ++ KD ++E
Sbjct: 67 YYDGKVMKLSPKAEEV-ATFFAKMLDHEYTTKEIFRKNFFKDWRKE 111
Score = 29.3 bits (64), Expect = 0.54
Identities = 19/51 (37%), Positives = 24/51 (46%)
Query: 107 KPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAP 157
KPK K K + PEP + K K EE K + +EE E K + E P
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGP 51
Score = 27.3 bits (59), Expect = 2.0
Identities = 18/44 (40%), Positives = 22/44 (49%), Gaps = 5/44 (11%)
Query: 103 KPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEE 146
KPK K K K PEP K +PK EE +K + EE + E
Sbjct: 1 KPKNKDKDKKVPEP-----DNKKKKPKKEEEQKWKWWEEERYPE 39
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 30.8 bits (68), Expect = 0.19
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 72 KPKEEPKEKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVE 131
K K+ P+ KK++PKKEE +K + + K K P P EP PE
Sbjct: 7 KDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKF 66
Query: 132 EVKKEEPKEEPKKEEAKEEAKEKSAPKQVTTKDIVKE---KDKQEE 174
+ K PK EE K + TTK+I ++ KD ++E
Sbjct: 67 YYDGKVMKLSPKAEEV-ATFFAKMLDHEYTTKEIFRKNFFKDWRKE 111
Score = 29.3 bits (64), Expect = 0.54
Identities = 19/51 (37%), Positives = 24/51 (46%)
Query: 107 KPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAP 157
KPK K K + PEP + K K EE K + +EE E K + E P
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGP 51
Score = 27.3 bits (59), Expect = 2.0
Identities = 18/44 (40%), Positives = 22/44 (49%), Gaps = 5/44 (11%)
Query: 103 KPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEE 146
KPK K K K PEP K +PK EE +K + EE + E
Sbjct: 1 KPKNKDKDKKVPEP-----DNKKKKPKKEEEQKWKWWEEERYPE 39
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 28.5 bits (62), Expect = 0.92
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 98 PKPKPKPKPKPKPKPKPEPKPEPKPEPKPEP-KVEEVKKEEPKEEPKKEEAKEEAKEKSA 156
P P + + KPE E P P+ K ++ ++ P + P +E K +
Sbjct: 225 PPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDE 284
Query: 157 PKQVTTKDIVKEKDKQEESNKTSEGATSEAQAYNP 191
P+ V D K +D E+ +G Q NP
Sbjct: 285 PEYVPDPDAEKPEDWDED----MDGEWEAPQIANP 315
Score = 25.4 bits (54), Expect = 7.8
Identities = 19/77 (24%), Positives = 31/77 (39%), Gaps = 3/77 (3%)
Query: 77 PKEKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPE---PKPEPKVEEV 133
P P +E E+ K E +PK KP E P P+ KP+ +++
Sbjct: 225 PPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDE 284
Query: 134 KKEEPKEEPKKEEAKEE 150
+ P + +K E +E
Sbjct: 285 PEYVPDPDAEKPEDWDE 301
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-Gap
Length = 234
Score = 28.5 bits (62), Expect = 0.92
Identities = 28/131 (21%), Positives = 50/131 (37%), Gaps = 8/131 (6%)
Query: 108 PKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAPKQVTTKDIVK 167
P PKP P P P + ++ ++++ P++EP +E A T +
Sbjct: 19 PATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFAR 78
Query: 168 EKDKQ---EESNKTSEGATSEAQAYN----PGV-SNEFLMKIQTAISSKNRYPKMAQIRG 219
+ Q E K + G + YN P V FL ++ + + + YP +
Sbjct: 79 SANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 138
Query: 220 IEGEVLVSFTI 230
I+ V T+
Sbjct: 139 IDESQRVPATL 149
>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 551
Score = 28.5 bits (62), Expect = 0.92
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 44 AQAGTTKVTMSLASINTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKEVTKPKPKPK 103
AQ T V A+ + + K++A++A E KK+E KK + + K KP+
Sbjct: 397 AQRAQTDVNNKQAAFDAAAKEKSDADAAL--SSAMESRKKKEDKKRSAENNLNDEKNKPR 454
Query: 104 PKPKP-----KPKPKPE 115
K P PK E
Sbjct: 455 KGFKDYGHDYHPAPKTE 471
>pdb|1RGP| Gtpase-Activation Domain From Rhogap
Length = 242
Score = 28.5 bits (62), Expect = 0.92
Identities = 29/132 (21%), Positives = 53/132 (39%), Gaps = 10/132 (7%)
Query: 108 PKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAPKQVTTKDIVK 167
P PKP P P P + ++ ++++ P++EP +E A +TT+ I +
Sbjct: 27 PATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQA-HALTTEGIFR 85
Query: 168 EKDK----QEESNKTSEGATSEAQAYN----PGV-SNEFLMKIQTAISSKNRYPKMAQIR 218
+E K + G + YN P V FL ++ + + + YP +
Sbjct: 86 RSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFL 145
Query: 219 GIEGEVLVSFTI 230
I+ V T+
Sbjct: 146 NIDESQRVPATL 157
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 28.1 bits (61), Expect = 1.2
Identities = 15/59 (25%), Positives = 29/59 (48%)
Query: 61 NSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPE 119
N N + A + + E+ +KE+ +K E ++E + + K K K K +PE + +
Sbjct: 11 NENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVKEEPEAEAD 69
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 28.1 bits (61), Expect = 1.2
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 113 KPEPKPEPKPEPKPEPKVEE--------VKKEEPKEEPKKEEAKEEAKE 153
KPE KPE KPE KV + +KK P + AK + KE
Sbjct: 11 KPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE 59
>pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated K-
Ras4b Peptide Product And Farnesyl Diphosphate Substrate
Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K- Ras4b Peptide Product
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
Length = 377
Score = 28.1 bits (61), Expect = 1.2
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 10/46 (21%)
Query: 112 PKPEP-KPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSA 156
P EP +PE P P P P P ++P++EE EA E +A
Sbjct: 12 PGGEPGQPEQPPPPPPPP---------PAQQPQEEEMAAEAGEAAA 48
Score = 27.3 bits (59), Expect = 2.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 106 PKPKPKPKPEPKPEPKPEPKPEPKVEEVKKE 136
P +P +P P P P P +P+ EE+ E
Sbjct: 12 PGGEPGQPEQPPPPPPPPPAQQPQEEEMAAE 42
>pdb|1HHN|A Chain A, Calreticulin P-Domain
Length = 101
Score = 27.7 bits (60), Expect = 1.6
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 79 EKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEP 138
+K K + K E E K KP+ KP+ P P+ K KPE EE+ E
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAK---KPEDWDEEMDGEWE 58
Query: 139 KEEPKKEEAKEEAKEKSAPKQVTTKD 164
+ E K E K P+Q+ D
Sbjct: 59 PPVIQNPEYKGEWK----PRQIDNPD 80
>pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 27.3 bits (59), Expect = 2.0
Identities = 23/110 (20%), Positives = 42/110 (37%), Gaps = 1/110 (0%)
Query: 85 EPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKK 144
+P E T + K + K K P E +P+ + V+EV ++ + +
Sbjct: 19 DPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALED 78
Query: 145 EEAKEEAKEKSAPKQ-VTTKDIVKEKDKQEESNKTSEGATSEAQAYNPGV 193
+E E+ ++ T K K+K K+ +T + Y GV
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNGV 128
>pdb|1BN5| Human Methionine Aminopeptidase 2
pdb|1BOA| Human Methionine Aminopeptidase 2 Complexed With Angiogenesis
Inhibitor Fumagillin
Length = 478
Score = 27.3 bits (59), Expect = 2.0
Identities = 23/110 (20%), Positives = 42/110 (37%), Gaps = 1/110 (0%)
Query: 85 EPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKK 144
+P E T + K + K K P E +P+ + V+EV ++ + +
Sbjct: 19 DPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALED 78
Query: 145 EEAKEEAKEKSAPKQ-VTTKDIVKEKDKQEESNKTSEGATSEAQAYNPGV 193
+E E+ ++ T K K+K K+ +T + Y GV
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNGV 128
>pdb|1JVR| Structure Of The Htlv-Ii Matrix Protein, Nmr, 20 Structures
Length = 137
Score = 26.2 bits (56), Expect = 4.6
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 93 KEVTKPKPKPKPKPKPK-PKPKPEPKPEPKPEPK-PEPKVE 131
K P P P P P P P P P PE P P VE
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVE 130
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 26.2 bits (56), Expect = 4.6
Identities = 11/36 (30%), Positives = 22/36 (60%)
Query: 76 EPKEKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPK 111
+P +++ P++EE ++E KP+ K K K +P+
Sbjct: 247 KPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPR 282
Score = 25.4 bits (54), Expect = 7.8
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 73 PKEEPKEKPKKEEPKKEEPKKEVTKPKPKPKPKPK 107
P +E +++P++EE ++EE +K K K K +P+
Sbjct: 249 PTDEQQQRPQEEE-EEEEDEKPQCKGKDKHCQRPR 282
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 189-261)
Length = 74
Score = 25.8 bits (55), Expect = 6.0
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 79 EKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEP 138
+K K + K E E K KP+ KP+ P P+ K KPE EE+ E
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAK---KPEDWDEEMDGEWE 58
Query: 139 KEEPKKEEAKEEAKEK 154
+ E K E K +
Sbjct: 59 PPVIQNPEYKGEWKPR 74
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 25.8 bits (55), Expect = 6.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 127 EPKVEEVKKEEPKEEPKKEEAKEEAKEKSAPK 158
+ +VE++ K+ +EE K E K+E ++K K
Sbjct: 230 QKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 25.4 bits (54), Expect = 7.8
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 8/45 (17%)
Query: 139 KEEPKKEEAKEEAKEKSAPKQVTTKDIVKEKDKQEESNKTSEGAT 183
KE K+ EA+EEA+EK EK + EE+ K ++ AT
Sbjct: 89 KELEKRREAREEAEEKWRE--------ALEKGEIEEARKYAQRAT 125
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
Length = 473
Score = 25.4 bits (54), Expect = 7.8
Identities = 14/26 (53%), Positives = 18/26 (68%), Gaps = 2/26 (7%)
Query: 16 SVSFLISFALYAIGFGYFLLREDAPE 41
+V+FL S L FGYFL+R+ APE
Sbjct: 80 TVAFLCSAVLAM--FGYFLVRKYAPE 103
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.301 0.123 0.328
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,677,801
Number of Sequences: 13198
Number of extensions: 77254
Number of successful extensions: 412
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 98
length of query: 285
length of database: 2,899,336
effective HSP length: 87
effective length of query: 198
effective length of database: 1,751,110
effective search space: 346719780
effective search space used: 346719780
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 54 (25.4 bits)