BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645957|ref|NP_208136.1| magnesium and cobalt
transport protein (corA) [Helicobacter pylori 26695]
(318 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2OCC|A Chain A, Bovine Heart Cytochrome C Oxidase At Th... 33 0.043
pdb|1AR1|A Chain A, Structure At 2.7 Angstrom Resolution Of... 30 0.28
pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Gua... 30 0.28
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Ki... 30 0.28
pdb|1QLE|A Chain A, Cryo-Structure Of The Paracoccus Denitr... 30 0.28
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 29 0.81
pdb|1B7G|O Chain O, Glyceraldehyde 3-Phosphate Dehydrogenas... 28 1.1
pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-R... 28 1.1
pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus ... 28 1.1
pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoen... 28 1.4
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 28 1.4
pdb|1EB0|A Chain A, Crystal Structure Of Bacillus Pasteurii... 27 2.4
pdb|5PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 3.1
pdb|4PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 3.1
pdb|2PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 3.1
pdb|7PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 3.1
pdb|1GYM| Phosphatidylinositol-Specific Phospholipase C I... 27 3.1
pdb|6PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 3.1
pdb|3PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 3.1
pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate S... 25 9.0
pdb|1C9W|A Chain A, Cho Reductase With Nadp+ 25 9.0
>pdb|2OCC|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCR|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCO|A Chain A, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound
State
pdb|1OCO|N Chain N, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound
State
pdb|1OCC|A Chain A, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|N Chain N, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCZ|A Chain A, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|N Chain N, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
Length = 514
Score = 33.1 bits (74), Expect = 0.043
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 261 FTVATMAMMPPT------LIGTIYGMNFKFMPELEWQYGYLFALIVMAISTIL 307
FT ATM + PT + T++G N K+ P + W G++F V ++ I+
Sbjct: 305 FTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIV 357
>pdb|1AR1|A Chain A, Structure At 2.7 Angstrom Resolution Of The Paracoccus
Denitrificans Two-Subunit Cytochrome C Oxidase Complexed
With An Antibody Fv Fragment
Length = 558
Score = 30.4 bits (67), Expect = 0.28
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 261 FTVATMAMMPPT------LIGTIYGMNFKFMPELEWQYGYLFALIVMAISTIL 307
F +ATM + PT I T++G + +F + W +G+LF V ++ ++
Sbjct: 340 FMLATMTIAVPTGIKVFSWIATMWGGSIEFKTPMLWAFGFLFLFTVGGVTGVV 392
>pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Guanosine
Monophosphate
Length = 187
Score = 30.4 bits (67), Expect = 0.28
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 146 KGVECLEWINKQTSLLRKNIIFKETSTHDDILVRLSNLQEFNVTLRDSFFDKR 198
+G E E INK+ S + + + ET HD ++V +L + L+D F ++
Sbjct: 136 RGTETEESINKRLSAAQAELAYAETGAHDKVIVN-DDLDKAYKELKDFIFAEK 187
>pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
Length = 186
Score = 30.4 bits (67), Expect = 0.28
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 146 KGVECLEWINKQTSLLRKNIIFKETSTHDDILVRLSNLQEFNVTLRDSFFDKR 198
+G E E INK+ S + + + ET HD ++V +L + L+D F ++
Sbjct: 135 RGTETEESINKRLSAAQAELAYAETGAHDKVIVN-DDLDKAYKELKDFIFAEK 186
>pdb|1QLE|A Chain A, Cryo-Structure Of The Paracoccus Denitrificans
Four-Subunit Cytochrome C Oxidase In The Completely
Oxidized State Complexed With An Antibody Fv Fragment
Length = 538
Score = 30.4 bits (67), Expect = 0.28
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 261 FTVATMAMMPPT------LIGTIYGMNFKFMPELEWQYGYLFALIVMAISTIL 307
F +ATM + PT I T++G + +F + W +G+LF V ++ ++
Sbjct: 324 FMLATMTIAVPTGIKVFSWIATMWGGSIEFKTPMLWAFGFLFLFTVGGVTGVV 376
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 28.9 bits (63), Expect = 0.81
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 130 EDGFDILTKIFEVYFE---KGV--ECLEWINKQTSLLRKNIIFKETSTHDDILVRLSNLQ 184
E+GF+I K E + K + + E I+K+ + K + K I + + N
Sbjct: 394 EEGFNISDKDMEKEYRGQNKAINKQAYEEISKEHLAVYKIQMCKSVKA-PGICIDVDNED 452
Query: 185 EFNVTLRDSFFD---KRRIITALLRSNKVDSDTKNNLNIILTDFSSLVESTTVNLNSLDN 241
F + ++SF D K I +SN +++D N I+ TD S +E + N SL +
Sbjct: 453 LFFIADKNSFSDDLSKNERIEYNTQSNYIENDFPINELILDTDLISKIELPSENTESLTD 512
Query: 242 IQNLFASQVNVEQNKIIKLFT 262
V +Q I K+FT
Sbjct: 513 FN--VDVPVYEKQPAIKKIFT 531
>pdb|1B7G|O Chain O, Glyceraldehyde 3-Phosphate Dehydrogenase
pdb|1B7G|Q Chain Q, Glyceraldehyde 3-Phosphate Dehydrogenase
Length = 340
Score = 28.5 bits (62), Expect = 1.1
Identities = 34/137 (24%), Positives = 59/137 (42%), Gaps = 12/137 (8%)
Query: 161 LRKNIIFKETSTHDDILVRLSNLQEFNVTLRDSFFDKRRII----TALLRS----NKVDS 212
L++N IF+ + + S L +N L + R++ TALLR+ NKV
Sbjct: 100 LQRNAIFQGGEKAEVADISFSALCNYNEALGKKYI---RVVSCNTTALLRTICTVNKVSK 156
Query: 213 DTKNNLNIILTDFSSLVESTTVNLNSLDNIQNLFASQVNVEQNKIIKLFTVATMAMMPPT 272
K I+ + E +NSL S + N +I+ +ATMA++ PT
Sbjct: 157 VEKVRATIVRRA-ADQKEVKKGPINSLVPDPATVPSHHAKDVNSVIRNLDIATMAVIAPT 215
Query: 273 LIGTIYGMNFKFMPELE 289
+ ++ +N ++E
Sbjct: 216 TLMHMHFINITLKDKVE 232
>pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1264
Score = 28.5 bits (62), Expect = 1.1
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 42 ELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTINAFFTNQDENETFH 91
+L + Q Y + + TD +R V + W +++ A F N +EN F+
Sbjct: 710 KLRQIEQAYEMGFLTDR-ERYDQVIQLWTETTEKVTQAVFNNFEENYPFN 758
>pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1265
Score = 28.5 bits (62), Expect = 1.1
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 42 ELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTINAFFTNQDENETFH 91
+L + Q Y + + TD +R V + W +++ A F N +EN F+
Sbjct: 711 KLRQIEQAYEMGFLTDR-ERYDQVIQLWTETTEKVTQAVFNNFEENYPFN 759
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1524
Score = 28.1 bits (61), Expect = 1.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 42 ELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTINAFFTNQDENETFH 91
+L + Q Y + + TD +R V + W +++ A F N +EN F+
Sbjct: 970 KLRQIEQAYEMGFLTDR-ERYDQVIQLWTETTEKVTQAVFKNFEENYPFN 1018
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 28.1 bits (61), Expect = 1.4
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 34 ELINPTPNELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTINAFFTNQDENETFH 91
+ + +L + Q Y + + TD +R + + W +++ A F N +EN F+
Sbjct: 962 QYLEEADRKLLQIEQAYEMGFLTDR-ERYDQILQLWTETTEKVTQAVFKNFEENYPFN 1018
>pdb|1EB0|A Chain A, Crystal Structure Of Bacillus Pasteurii Uree At 1.85 A,
Phased By Siras. Type I Crystal Form.
pdb|1EAR|A Chain A, Crystal Structure Of Bacillus Pasteurii Uree At 1.7 A.
Type Ii Crystal Form
Length = 147
Score = 27.3 bits (59), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 148 VECLEWINKQTSLLRKNIIFKETSTHDDILVRLSN 182
++ ++W+ + L K I+ KET DI ++L N
Sbjct: 17 IKKVDWLEVEWEDLNKRILRKETENGTDIAIKLEN 51
>pdb|5PTD| Phosphatidylinositol-Specific Phospholipase C Mutant H32a
Length = 298
Score = 26.9 bits (58), Expect = 3.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 33 FELINPTPNELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTIN 78
F+L NP ++ ++QEY Y DH R+ + D +++ ++
Sbjct: 37 FKLQNPI-KQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLH 81
>pdb|4PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D274n
Length = 298
Score = 26.9 bits (58), Expect = 3.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 33 FELINPTPNELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTIN 78
F+L NP ++ ++QEY Y DH R+ + D +++ ++
Sbjct: 37 FKLQNPI-KQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLH 81
>pdb|2PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D198e
Length = 298
Score = 26.9 bits (58), Expect = 3.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 33 FELINPTPNELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTIN 78
F+L NP ++ ++QEY Y DH R+ + D +++ ++
Sbjct: 37 FKLQNPI-KQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLH 81
>pdb|7PTD| Phosphatidylinositol-Specific Phospholipase C Mutant R163k
Length = 298
Score = 26.9 bits (58), Expect = 3.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 33 FELINPTPNELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTIN 78
F+L NP ++ ++QEY Y DH R+ + D +++ ++
Sbjct: 37 FKLQNPI-KQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLH 81
>pdb|1GYM| Phosphatidylinositol-Specific Phospholipase C In Complex With
Glucosamine-(Alpha-1-6)-Myo-Inositol
pdb|1PTG| Phosphatidylinositol-Specific Phospholipase C In Complex With
Myo-Inositol
pdb|1PTD| Phosphatidylinositol-Specific Phospholipase C
Length = 298
Score = 26.9 bits (58), Expect = 3.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 33 FELINPTPNELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTIN 78
F+L NP ++ ++QEY Y DH R+ + D +++ ++
Sbjct: 37 FKLQNPI-KQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLH 81
>pdb|6PTD| Phosphatidylinositol-Specific Phospholipase C Mutant H32l
Length = 298
Score = 26.9 bits (58), Expect = 3.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 33 FELINPTPNELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTIN 78
F+L NP ++ ++QEY Y DH R+ + D +++ ++
Sbjct: 37 FKLQNPI-KQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLH 81
>pdb|3PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D274s
Length = 298
Score = 26.9 bits (58), Expect = 3.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 33 FELINPTPNELATLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTIN 78
F+L NP ++ ++QEY Y DH R+ + D +++ ++
Sbjct: 37 FKLQNPI-KQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLH 81
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 25.4 bits (54), Expect = 9.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 88 ETFHTEMATFILSNNILFTIYYGTLEIF 115
+ FH +++ IL NN ++YYG + F
Sbjct: 103 KVFHGKISNIILVNNSPLSLYYGIAKEF 130
>pdb|1C9W|A Chain A, Cho Reductase With Nadp+
Length = 315
Score = 25.4 bits (54), Expect = 9.0
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 108 YYGTLEIFDSIQKKVLASPKKFEDGFDILTKIFEVYFEK 146
YY E+ ++IQ+K+ + ED F I++K++ FE+
Sbjct: 48 YYNEHEVGEAIQEKIKEKAVRREDLF-IVSKLWPTCFER 85
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,704,120
Number of Sequences: 13198
Number of extensions: 65761
Number of successful extensions: 207
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 21
length of query: 318
length of database: 2,899,336
effective HSP length: 88
effective length of query: 230
effective length of database: 1,737,912
effective search space: 399719760
effective search space used: 399719760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)