BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645958|ref|NP_208137.1| phosphoglycerate kinase
[Helicobacter pylori 26695]
(402 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PHP| 3-Phosphoglycerate Kinase (Pgk) (E.C.2.7.2.3) 330 1e-91
pdb|1VPE| Crystallographic Analysis Of Phosphoglycerate K... 320 2e-88
pdb|16PK| Phosphoglycerate Kinase From Trypanosoma Brucei... 288 6e-79
pdb|3PGK| Phosphoglycerate Kinase (E.C.2.7.2.3) Complex W... 279 5e-76
pdb|1QPG| 3-Phosphoglycerate Kinase, Mutation R65q 276 4e-75
pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phospho... 268 1e-72
pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Co... 257 1e-69
pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Ki... 219 4e-58
pdb|1AL3| Cofactor Binding Fragment Of Cysb From Klebsiel... 27 5.4
pdb|3FYG|A Chain A, Crystal Structure Of Tetradeca-(3-Fluor... 26 9.2
>pdb|1PHP| 3-Phosphoglycerate Kinase (Pgk) (E.C.2.7.2.3)
Length = 394
Score = 330 bits (847), Expect = 1e-91
Identities = 182/396 (45%), Positives = 254/396 (63%), Gaps = 7/396 (1%)
Query: 10 NVKNIQEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKAKDIILVSH 69
N K I++V+V KRV RVDFNVP+++ ITDDTRIR +LPTI+Y I++ AK +IL SH
Sbjct: 2 NKKTIRDVDVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAK-VILASH 59
Query: 70 LGRPKG-VEEKLSLKPFLKRLERLLNHEVVFSQNIV--QLKQALNENAPTRIFLLENIRF 126
LGRPKG V E+L L KRL LL V + V ++K A++ + LLEN+RF
Sbjct: 60 LGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRF 119
Query: 127 LRGEEENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFAPIKVSGFLLKKEIDSF 186
GEE+ND LAK A L D++VNDAFG +HR HAST G A + P V+GFL++KE++
Sbjct: 120 YPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYLPA-VAGFLMEKELEVL 178
Query: 187 YQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDLIDKLIIAGAMSNTFLKALGYDVQDSSV 246
+A ++P RP I+GGAKV K+ ++ N+L+ +D LII G ++ TF+KALG+DV S +
Sbjct: 179 GKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLL 238
Query: 247 EDALINDALELLQSAKEKKVKVYLPIDAVTTDDILNPKHIKISPVQDIEPKHKIADIGPA 306
E+ I A ++ AKEK V+ Y+P+D V D N + K+ P+ I DIGP
Sbjct: 239 EEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPK 298
Query: 307 SLKLFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKIADTY-AFSLIGGGDTIDAIN 365
+ +L+ +VI + ++WNGP+GV E FA GT +A +A+ +S+IGGGD+ A+
Sbjct: 299 TRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEALDTYSVIGGGDSAAAVE 358
Query: 366 RAGEKDNMSFISTGGGASLELLEGKILPCFEVLDKR 401
+ G D M ISTGGGASLE +EGK LP L+ +
Sbjct: 359 KFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK 394
>pdb|1VPE| Crystallographic Analysis Of Phosphoglycerate Kinase From The
Hyperthermophilic Bacterium Thermotoga Maritima
Length = 398
Score = 320 bits (819), Expect = 2e-88
Identities = 181/387 (46%), Positives = 258/387 (65%), Gaps = 10/387 (2%)
Query: 14 IQEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKAKDIILVSHLGRP 73
I++V++ KRV++RVDFNVP+ + + + DDTRIR +LPTI+Y ++ AK +IL+SHLGRP
Sbjct: 5 IRDVDLKGKRVIMRVDFNVPVKDGV-VQDDTRIRAALPTIKYALEQGAK-VILLSHLGRP 62
Query: 74 KGVEE-KLSLKPFLKRLERLLNHEVVFSQNIV--QLKQALNENAPTRIFLLENIRFLRGE 130
KG + SL P KRL LL EV F +V ++K+A+ E + LLEN RF GE
Sbjct: 63 KGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGE 122
Query: 131 EENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFAPIKVSGFLLKKEIDSFYQAF 190
+ND LAK ASL D+ VNDAFGT+HR HAS G A+F P V+GFL++KEI +
Sbjct: 123 TKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFIP-SVAGFLMEKEIKFLSKVT 181
Query: 191 NHPLRPLLLIVGGAKVSSKLTLLKNILDLIDKLIIAGAMSNTFLKALGYDVQDSSVEDAL 250
+P +P ++++GGAKVS K+ ++ N+++ D+++I GAM TFLKALG +V S VE+
Sbjct: 182 YNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDK 241
Query: 251 INDALELLQSAKEKKVKVYLPIDAVTTDDILNPKHIKISPVQDIEPKHKIA-DIGPASLK 309
I+ A EL++ AKEK V++ LP+DAV I K+ + D P+ + DIGP +++
Sbjct: 242 IDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIE 301
Query: 310 LFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKIA---DTYAFSLIGGGDTIDAINR 366
LF + + A T++WNGP+GV E +FA GT +A IA + A +++GGGD+ A+N+
Sbjct: 302 LFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNK 361
Query: 367 AGEKDNMSFISTGGGASLELLEGKILP 393
G +D S +STGGGASLE LEGK LP
Sbjct: 362 FGLEDKFSHVSTGGGASLEFLEGKELP 388
>pdb|16PK| Phosphoglycerate Kinase From Trypanosoma Brucei Bisubstrate Analog
pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|B Chain B, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|C Chain C, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|D Chain D, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
Length = 415
Score = 288 bits (738), Expect = 6e-79
Identities = 170/415 (40%), Positives = 248/415 (58%), Gaps = 27/415 (6%)
Query: 12 KNIQEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKAKDIILVSHLG 71
K+I E ++ K+VLIRVDFNVP+ +N IT+D RIR +LPT++ + + +L+SHLG
Sbjct: 3 KSINECDLKGKKVLIRVDFNVPV-KNGKITNDYRIRSALPTLKKVL-TEGGSCVLMSHLG 60
Query: 72 RPKGV-----------------EEKLSLKPFLKRLERLLNHEVVFSQNIVQLKQALNENA 114
RPKG+ ++K +LKP KRL LL V F+ + + +++ +
Sbjct: 61 RPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMS 120
Query: 115 PTRIFLLENIRFLRGE----EENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFA 170
P + LLEN+RF + E ++ E +AK LAS DV+++DAFGT+HR A+ G K
Sbjct: 121 PGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKIL 180
Query: 171 PIKVSGFLLKKEIDSFYQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDLIDKLIIAGAMS 230
+G+L++KEI F + +P RPL+ IVGGAKVS K+ LL N+L ID L+I GAM+
Sbjct: 181 GNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA 240
Query: 231 NTFLKALGYDVQDSSVEDALINDALELLQSAKEKKVKVYLPIDAVTTDDILNPKHIKISP 290
TFLKA GY + S E++ + A LL+ A+++KV+V LPID V + I+
Sbjct: 241 YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITE 300
Query: 291 VQDIEPKHKIADIGPASLKLFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKIA--- 347
Q+I H DIGP +++ + + I + +WNGP+GV E +++GT +A +
Sbjct: 301 DQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGT 360
Query: 348 -DTYAFSLIGGGDTIDAINRAGEKDNMSFISTGGGASLELLEGKILPCFEVLDKR 401
+ S+IGGGD+ A +GE MS +STGGGASLELLEGK LP VLD +
Sbjct: 361 HEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK 415
>pdb|3PGK| Phosphoglycerate Kinase (E.C.2.7.2.3) Complex With Atp, Magnesium
Or Manganese, 3-Phosphoglycerate
Length = 416
Score = 279 bits (713), Expect = 5e-76
Identities = 165/411 (40%), Positives = 245/411 (59%), Gaps = 25/411 (6%)
Query: 13 NIQEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKAKDIILVSHLGR 72
++Q++++ KRV IRVDFNVPLD IT + RI +LPTI+Y +++ + ++L SHLGR
Sbjct: 8 SVQDLDLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEHHPRYVVLASHLGR 66
Query: 73 PKGVE-EKLSLKPFLKRLERLLNHEVVFSQNIV--QLKQALNENAPTRIFLLENIRF--- 126
P G EK SL P K L+ LL +V F + V +++ A+ +AP + LLEN+R+
Sbjct: 67 PNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIE 126
Query: 127 -----------LRGEEENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFAPIKVS 175
++ +E+ + +L+SL DV++NDAFGT+HR H+S G P + +
Sbjct: 127 EEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAA 184
Query: 176 GFLLKKEIDSFYQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDLIDKLIIAGAMSNTFLK 235
GFLL+KE+ F +A +P RP L I+GGAKV+ K+ L+ N+LD +D +II G M+ TF K
Sbjct: 185 GFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKK 244
Query: 236 AL-GYDVQDSSVEDALINDALELLQSAKEKKVKVYLPIDAVTTDDILNPKHIK-ISPVQD 293
L ++ DS + A+ + +L++ AK K V+V LP+D + D + K ++ +
Sbjct: 245 VLENTEIGDSIFDKAVGPEIAKLMEKAKAKGVEVVLPVDFIIADAFSASANTKTVTDKEG 304
Query: 294 IEPKHKIADIGPASLKLFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKIADTYAFS 353
I + D GP S KLF+ + A ILWNGP GV E ++FA GT L ++ + A
Sbjct: 305 IPAGWQGLDNGPESRKLFAATVAKATVILWNGPPGVFEFEKFAAGTKALLDEVVKSSAAG 364
Query: 354 ---LIGGGDTIDAINRAGEKDNMSFISTGGGASLELLEGKILPCFEVLDKR 401
+IGGGDT + G D +S +STGGGASLELLEGK LP L ++
Sbjct: 365 NTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEK 415
>pdb|1QPG| 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 276 bits (705), Expect = 4e-75
Identities = 164/411 (39%), Positives = 244/411 (58%), Gaps = 25/411 (6%)
Query: 13 NIQEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKAKDIILVSHLGR 72
++Q++++ KRV IRVDFNVPLD IT + RI +LPTI+Y +++ + ++L SHLG+
Sbjct: 7 SVQDLDLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQ 65
Query: 73 PKGVE-EKLSLKPFLKRLERLLNHEVVFSQNIV--QLKQALNENAPTRIFLLENIRF--- 126
P G EK SL P K L+ LL +V F + V +++ A+ +AP + LLEN+R+
Sbjct: 66 PNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIE 125
Query: 127 -----------LRGEEENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFAPIKVS 175
++ +E+ + +L+SL DV++NDAFGT+HR H+S G P + +
Sbjct: 126 EEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAA 183
Query: 176 GFLLKKEIDSFYQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDLIDKLIIAGAMSNTFLK 235
GFLL+KE+ F +A +P RP L I+GGAKV+ K+ L+ N+LD +D +II G M+ TF K
Sbjct: 184 GFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKK 243
Query: 236 AL-GYDVQDSSVEDALINDALELLQSAKEKKVKVYLPIDAVTTDDILNPKHIK-ISPVQD 293
L ++ DS + A +L++ AK K V+V LP+D + D + K ++ +
Sbjct: 244 VLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEG 303
Query: 294 IEPKHKIADIGPASLKLFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKIADTYAFS 353
I + D GP S KLF+ + A TI+WNGP GV E ++FA GT L ++ + A
Sbjct: 304 IPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAG 363
Query: 354 ---LIGGGDTIDAINRAGEKDNMSFISTGGGASLELLEGKILPCFEVLDKR 401
+IGGGDT + G D +S +STGGGASLELLEGK LP L ++
Sbjct: 364 NTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEK 414
>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase
Ternary Complex With Amp-Pcp And 3pg
Length = 416
Score = 268 bits (684), Expect = 1e-72
Identities = 159/415 (38%), Positives = 244/415 (58%), Gaps = 27/415 (6%)
Query: 8 MQNVKNIQEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKAKDIILV 67
+ N + ++ V KRV++RVDFNVP+ N IT++ RI+ ++P+I++C+D+ AK ++L+
Sbjct: 2 LSNKLTLDKLNVKGKRVVMRVDFNVPMKNN-QITNNQRIKAAVPSIKFCLDDGAKSVVLM 60
Query: 68 SHLGRPKG--VEEKLSLKPFLKRLERLLNHEVVFSQNIV--QLKQALNENAPTRIFLLEN 123
SHLGRP G + +K SL+P L+ LL +V+F ++ V ++++A + A + LLEN
Sbjct: 61 SHLGRPDGSPMPDKYSLQPVAVELKSLLGKDVLFLKDCVGPEVEKACADPAAGSVILLEN 120
Query: 124 IRF---------------LRGEEENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAK 168
+RF ++ E + L+ L DV+VNDAFGT+HR H+S G
Sbjct: 121 LRFHVEEEGKGKDASGNKVKAEPAKIKTFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN- 179
Query: 169 FAPIKVSGFLLKKEIDSFYQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDLIDKLIIAGA 228
P K GFL+KKE++ F +A P RP L I+GGAKV+ K+ L+ N+LD ++++II G
Sbjct: 180 -LPKKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGG 238
Query: 229 MSNTFLKAL-GYDVQDSSVEDALINDALELLQSAKEKKVKVYLPIDAVTTDDI-LNPKHI 286
M+ TFLK L ++ S ++ L+ A++ VK+ LP+D VT D + K
Sbjct: 239 MAFTFLKVLNNMEIGTSLFDEEGAKIVKNLMSKAEKNGVKITLPVDFVTADKFDEHAKTG 298
Query: 287 KISPVQDIEPKHKIADIGPASLKLFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKI 346
+ + I D GP S K +SE + A I+WNGP+GV E + FA+GT L ++
Sbjct: 299 QATVASGIPAGWMGLDCGPESSKKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEV 358
Query: 347 ADTYA---FSLIGGGDTIDAINRAGEKDNMSFISTGGGASLELLEGKILPCFEVL 398
+ ++IGGGDT + +D +S +STGGGASLELLEGK+LP + L
Sbjct: 359 VKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDAL 413
>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg
And Mgadp
Length = 413
Score = 257 bits (657), Expect = 1e-69
Identities = 159/413 (38%), Positives = 236/413 (56%), Gaps = 27/413 (6%)
Query: 10 NVKNIQEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKAKDIILVSH 69
N + ++ V KRV++RVDFNVP+ IT++ RI+ ++P+I++C+D+ AK ++L+SH
Sbjct: 1 NKLTLDKLNVKGKRVVMRVDFNVPMAA-AQITNNARIKAAVPSIKFCLDDGAKSVVLMSH 59
Query: 70 LGRPKG--VEEKLSLKPFLKRLERLLNHEVVFSQNIV--QLKQALNENAPTRIFLLENIR 125
LGRP G + +K SL+P L+ L V+F ++ V +++A + A + LLEN+R
Sbjct: 60 LGRPDGSPMPDKYSLQPVAAELKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLR 119
Query: 126 F---------------LRGEEENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFA 170
F GE + L++L DV+VNDAFGT+HR H+S G
Sbjct: 120 FHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVNDAFGTAHRAHSSMVGVN--L 177
Query: 171 PIKVSGFLLKKEIDSFYQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDLIDKLIIAGAMS 230
P K FL+KKE++ F A P RP L I+GGAKV+ K+ L+ N+LD ++++II G M+
Sbjct: 178 PKKAGAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMA 237
Query: 231 NTFLKAL-GYDVQDSSVEDALINDALELLQSAKEKKVKVYLPIDAVTTDDILNPKHIKIS 289
TFLK L ++ S ++A L+ A VK+ LP+D VT D I +
Sbjct: 238 FTFLKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQA 297
Query: 290 PVQDIEPKHKIA-DIGPASLKLFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKIAD 348
V P + D GP S +SE + A I+WNGP+GV E + FA+GT L ++
Sbjct: 298 TVASGIPAGWMGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVK 357
Query: 349 TYA---FSLIGGGDTIDAINRAGEKDNMSFISTGGGASLELLEGKILPCFEVL 398
+ ++IGGGDT + +DN+S +STGGGASLELLEGK+LP + L
Sbjct: 358 ATSRGCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLEGKVLPGVDAL 410
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 219 bits (558), Expect = 4e-58
Identities = 133/344 (38%), Positives = 197/344 (56%), Gaps = 23/344 (6%)
Query: 79 KLSLKPFLKRLERLLNHEVVFSQNIV--QLKQALNENAPTRIFLLENIRF---------- 126
K SL P K L+ LL +V F + V +++ A+ +AP + LLEN+R+
Sbjct: 3 KYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKV 62
Query: 127 ----LRGEEENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFAPIKVSGFLLKKE 182
++ +E+ + +L+SL DV++NDAFGT+HR H+S G P + +GFLL+KE
Sbjct: 63 DGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAAGFLLEKE 120
Query: 183 IDSFYQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDLIDKLIIAGAMSNTFLKAL-GYDV 241
+ F +A +P RP L I+GGAKV+ K+ L+ N+LD +D +II G M+ TF K L ++
Sbjct: 121 LKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEI 180
Query: 242 QDSSVEDALINDALELLQSAKEKKVKVYLPIDAVTTDDILNPKHIK-ISPVQDIEPKHKI 300
DS + A +L++ AK K V+V LP+D + D + K ++ + I +
Sbjct: 181 GDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQG 240
Query: 301 ADIGPASLKLFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKIADTYAFS---LIGG 357
D GP S KLF+ + A TI+WNGP GV E ++FA GT L ++ + A +IGG
Sbjct: 241 LDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGG 300
Query: 358 GDTIDAINRAGEKDNMSFISTGGGASLELLEGKILPCFEVLDKR 401
GDT + G D +S +STGGGASLELLEGK LP L ++
Sbjct: 301 GDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEK 344
Score = 67.0 bits (162), Expect = 4e-12
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 2 LAKMSFMQNVKNIQEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKA 61
L++ + + ++Q++++ KRV IRVDFNVPLD IT + RI +LPTI+Y +++
Sbjct: 341 LSEKKSLSSKLSVQDLDLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEHHP 399
Query: 62 KDIILVSHLGRPKG 75
+ ++L SHLGRP G
Sbjct: 400 RYVVLASHLGRPNG 413
>pdb|1AL3| Cofactor Binding Fragment Of Cysb From Klebsiella Aerogenes
Length = 324
Score = 26.6 bits (57), Expect = 5.4
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 303 IGPASLKLFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKIAD----TYAFSLIGGG 358
I +L L+ +++ P WN + V + A + ++A TY F G
Sbjct: 147 IATEALHLYDDLV-MLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRS 205
Query: 359 DTIDAINRAGEKDNMSFIST 378
+ A NRAG + F +T
Sbjct: 206 ELDTAFNRAGLTPRIVFTAT 225
>pdb|3FYG|A Chain A, Crystal Structure Of Tetradeca-(3-Fluorotyrosyl)-
Glutathione S-Transferase
pdb|3FYG|B Chain B, Crystal Structure Of Tetradeca-(3-Fluorotyrosyl)-
Glutathione S-Transferase
Length = 217
Score = 25.8 bits (55), Expect = 9.2
Identities = 14/36 (38%), Positives = 20/36 (54%)
Query: 57 IDNKAKDIILVSHLGRPKGVEEKLSLKPFLKRLERL 92
+D A DI+ H+ PK ++ +LK FL R E L
Sbjct: 155 VDFLAXDILDQXHIFEPKCLDAFPNLKDFLARFEGL 190
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,174,447
Number of Sequences: 13198
Number of extensions: 90009
Number of successful extensions: 260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 11
length of query: 402
length of database: 2,899,336
effective HSP length: 90
effective length of query: 312
effective length of database: 1,711,516
effective search space: 533992992
effective search space used: 533992992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)