BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645959|ref|NP_208138.1| glyceraldehyde-3-phosphate
dehydrogenase (gap) [Helicobacter pylori 26695]
(330 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 299 3e-82
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 298 6e-82
pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehyd... 297 1e-81
pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehyd... 271 7e-74
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory... 270 1e-73
pdb|1CER|P Chain P, Glycolysis, Oxidoreductase, Nad Mol_id:... 261 8e-71
pdb|1GAD|O Chain O, Mol_id: 1; Molecule: D-Glyceraldehyde-3... 250 2e-67
pdb|1GAE|O Chain O, Mol_id: 1; Molecule: D-Glyceraldehyde-3... 248 9e-67
pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phos... 245 4e-66
pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3... 244 7e-66
pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehy... 244 1e-65
pdb|1GPD|G Chain G, D-Glyceraldehyde-3-Phosphate Dehydrogen... 242 5e-65
pdb|4GPD|1 Chain 1, Apo-D-Gyceraldehyde-3-Phosphate Dehydro... 242 5e-65
pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethyla... 241 8e-65
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal ... 239 2e-64
pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-... 223 2e-59
pdb|1GGA|A Chain A, D-Glyceraldehyde-3-Phosphate Dehydrogen... 219 3e-58
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Ph... 213 3e-56
pdb|1GYP|A Chain A, Mol_id: 1; Molecule: Glyceraldehyde-3-P... 213 3e-56
pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrola... 25 9.3
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 299 bits (765), Expect = 3e-82
Identities = 155/329 (47%), Positives = 215/329 (65%), Gaps = 3/329 (0%)
Query: 3 IRIAINGTGRIGLCAIRVASQRKDIEIVAINSTAELETLLHLIRHDSVHGHFEAQLNADR 62
+++ ING GRIG R A + DIE+VA+N T TL HL+++DSVHG +A+++ +
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDTGGANTLAHLLKYDSVHGRLDAEVSVNG 61
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
+ + K I+V +ERD L + +I++E TG+F E ++ HL+ KKVIISAP
Sbjct: 62 NNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP 121
Query: 123 AQNTP-TFVYGVNHKNYHNES--VISNASCTTNASAPLLKILDEAFKVENALLTTIHSYT 179
A+N T V GVN Y ++ VISNASCTTN AP K+L E F + ++TT+HSYT
Sbjct: 122 AKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYT 181
Query: 180 NDQNLLDTKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLV 239
NDQ +LD HKD+RRARAA ++IPT+TG +KA++LVLP L K+ G+A+RVPTPNVS+V
Sbjct: 182 NDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVV 241
Query: 240 DLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTI 299
DL +K V+ V ALK A + KG+++ EE LVS D+ S S+ + M I
Sbjct: 242 DLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVI 301
Query: 300 GEKNAKVLAWYDNEMGYSERLIDMAQYIA 328
K KV++WYDNE GYS R++D+A YIA
Sbjct: 302 DGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
Length = 334
Score = 298 bits (763), Expect = 6e-82
Identities = 154/329 (46%), Positives = 215/329 (64%), Gaps = 3/329 (0%)
Query: 3 IRIAINGTGRIGLCAIRVASQRKDIEIVAINSTAELETLLHLIRHDSVHGHFEAQLNADR 62
+++ ING GRIG R A + DIE+VA+N + TL HL+++DSVHG +A+++ +
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEVSVNG 61
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
+ + K I+V +ERD L + +I++E TG+F E ++ HL+ KKVIISAP
Sbjct: 62 NNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP 121
Query: 123 AQNTP-TFVYGVNHKNYHNES--VISNASCTTNASAPLLKILDEAFKVENALLTTIHSYT 179
A+N T V GVN Y ++ VISNASCTTN AP K+L E F + ++TT+HSYT
Sbjct: 122 AKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYT 181
Query: 180 NDQNLLDTKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLV 239
NDQ +LD HKD+RRARAA ++IPT+TG +KA++LVLP L K+ G+A+RVPTPNVS+V
Sbjct: 182 NDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVV 241
Query: 240 DLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTI 299
DL +K V+ V ALK A + KG+++ EE LVS D+ S S+ + M I
Sbjct: 242 DLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVI 301
Query: 300 GEKNAKVLAWYDNEMGYSERLIDMAQYIA 328
K KV++WYDNE GYS R++D+A YIA
Sbjct: 302 DGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|P Chain P, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|Q Chain Q, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|R Chain R, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|O Chain O, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|P Chain P, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|Q Chain Q, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|R Chain R, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
Length = 334
Score = 297 bits (761), Expect = 1e-81
Identities = 154/329 (46%), Positives = 215/329 (64%), Gaps = 3/329 (0%)
Query: 3 IRIAINGTGRIGLCAIRVASQRKDIEIVAINSTAELETLLHLIRHDSVHGHFEAQLNADR 62
+++ ING GRIG R A + DIE+VA+N + TL HL+++DSVHG +A+++ +
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNG 61
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
+ + K I+V +ERD L + +I++E TG+F E ++ HL+ KKVIISAP
Sbjct: 62 NNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP 121
Query: 123 AQNTP-TFVYGVNHKNYHNES--VISNASCTTNASAPLLKILDEAFKVENALLTTIHSYT 179
A+N T V GVN Y ++ VISNASCTTN AP K+L E F + ++TT+HSYT
Sbjct: 122 AKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYT 181
Query: 180 NDQNLLDTKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLV 239
NDQ +LD HKD+RRARAA ++IPT+TG +KA++LVLP L K+ G+A+RVPTPNVS+V
Sbjct: 182 NDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVV 241
Query: 240 DLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTI 299
DL +K V+ V ALK A + KG+++ EE LVS D+ S S+ + M I
Sbjct: 242 DLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVI 301
Query: 300 GEKNAKVLAWYDNEMGYSERLIDMAQYIA 328
K KV++WYDNE GYS R++D+A YIA
Sbjct: 302 DGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
pdb|1HDG|Q Chain Q, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
Length = 332
Score = 271 bits (693), Expect = 7e-74
Identities = 145/328 (44%), Positives = 208/328 (63%), Gaps = 4/328 (1%)
Query: 4 RIAINGTGRIGLCAIRVASQRK--DIEIVAINSTAELETLLHLIRHDSVHGHFEAQLNAD 61
R+AING GRIG R+ +RK DIE+VAIN + +TL HL+++DSVH F ++
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYT 61
Query: 62 RTLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISA 121
I K I V +E D +KL + + +IE TG F + E + HL+ KKVII+A
Sbjct: 62 ENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITA 121
Query: 122 PAQNTP-TFVYGVNHKNYHNE-SVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYT 179
PA+ T V G N E ++IS ASCTTN+ AP++K+L E F + + +LTT+HSYT
Sbjct: 122 PAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYT 181
Query: 180 NDQNLLDTKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLV 239
NDQ +LD HKD+RRARAA +N+IPT+TG +KA++LV+P + K+ G+AIRVPTP+ S+
Sbjct: 182 NDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSIT 241
Query: 240 DLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTI 299
DL++ +K + V +K+A + KG++ ++E +VSSD I + FS I I
Sbjct: 242 DLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVI 301
Query: 300 GEKNAKVLAWYDNEMGYSERLIDMAQYI 327
G K KV +WYDNE GYS R++D + +
Sbjct: 302 GGKLVKVASWYDNEYGYSNRVVDTLELL 329
>pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 270 bits (691), Expect = 1e-73
Identities = 140/329 (42%), Positives = 210/329 (63%), Gaps = 3/329 (0%)
Query: 3 IRIAINGTGRIGLCAIRV-ASQRKDIEIVAINSTAELETLLHLIRHDSVHGHFEAQLNAD 61
+++AING GRIG +R + +++V IN T ++ HL+++DS+ G F+A +
Sbjct: 2 LKVAINGFGRIGRNFLRCWHGKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTA 61
Query: 62 RTLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISA 121
I K I V+S+R+ L + +++IE TG F + + HL+ KKV+I+A
Sbjct: 62 GDSAISVGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITA 121
Query: 122 PAQ-NTPTFVYGVNHKNY-HNESVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYT 179
P + + PT+V GVN + Y H +++ISNASCTTN AP +K+LD+ F + +TT HSYT
Sbjct: 122 PGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYT 181
Query: 180 NDQNLLDTKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLV 239
DQ LLD H+D+RRARAA LN++PTSTG +KA++LVLP L K+ G+A+RVPTPNVS+V
Sbjct: 182 GDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVV 241
Query: 240 DLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTI 299
DL + K V A +++ KG++S+ +E LVS DF + S+ + M +
Sbjct: 242 DLVVQVSKKTFAEEVNAAFRESADQELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVM 301
Query: 300 GEKNAKVLAWYDNEMGYSERLIDMAQYIA 328
G+ KV+AWYDNE GYS+R++D+A +A
Sbjct: 302 GDDMVKVIAWYDNEWGYSQRVVDLADIVA 330
>pdb|1CER|P Chain P, Glycolysis, Oxidoreductase, Nad Mol_id: 1; Molecule:
Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase; Chain:
O, P, Q, R; Synonym: Gapdh; Ec: 1.2.1.12; Engineered:
Yes
pdb|1CER|Q Chain Q, Glycolysis, Oxidoreductase, Nad Mol_id: 1; Molecule:
Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase; Chain:
O, P, Q, R; Synonym: Gapdh; Ec: 1.2.1.12; Engineered:
Yes
pdb|1CER|R Chain R, Glycolysis, Oxidoreductase, Nad Mol_id: 1; Molecule:
Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase; Chain:
O, P, Q, R; Synonym: Gapdh; Ec: 1.2.1.12; Engineered:
Yes
pdb|1CER|O Chain O, Glycolysis, Oxidoreductase, Nad Mol_id: 1; Molecule:
Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase; Chain:
O, P, Q, R; Synonym: Gapdh; Ec: 1.2.1.12; Engineered:
Yes
Length = 331
Score = 261 bits (667), Expect = 8e-71
Identities = 138/328 (42%), Positives = 203/328 (61%), Gaps = 5/328 (1%)
Query: 3 IRIAINGTGRIGLCAIRVASQRKDIEIVAINSTAELETLLHLIRHDSVHGHFEAQLNADR 62
+++ ING GRIG R+ R +E+ IN + +TL HL+++DS++ F ++ D
Sbjct: 1 MKVGINGFGRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDD 59
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
K I + +D ++ ++ A ++IE TG F + + AHL+ KKVII+AP
Sbjct: 60 QYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP 119
Query: 123 AQNTP-TFVYGVNHKNYH--NESVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYT 179
A+ T V GVNH+ Y +ISNASCTTN+ AP++K+L+EAF VE AL+TT+HSYT
Sbjct: 120 AKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYT 179
Query: 180 NDQNLLDTKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLV 239
NDQ LLD HKD+RRARAA +N+IPT+TG +KA +LVLP L + G+A+RVPT S+
Sbjct: 180 NDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSIS 239
Query: 240 DLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTI 299
D++ K+ V+ V ALK A + KG+++ E+ +V D + P S+IV +
Sbjct: 240 DITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL 299
Query: 300 GEKNAKVLAWYDNEMGYSERLIDMAQYI 327
G KV AWYDNE GY+ R+ D+ + +
Sbjct: 300 GNM-VKVFAWYDNEWGYANRVADLVELV 326
>pdb|1GAD|O Chain O, Mol_id: 1; Molecule: D-Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: O, P; Ec: 1.2.1.12; Engineered:
Yes; Other_details: Wild Type, Holo Form
pdb|1GAD|P Chain P, Mol_id: 1; Molecule: D-Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: O, P; Ec: 1.2.1.12; Engineered:
Yes; Other_details: Wild Type, Holo Form
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes.
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 250 bits (638), Expect = 2e-67
Identities = 126/329 (38%), Positives = 201/329 (60%), Gaps = 2/329 (0%)
Query: 3 IRIAINGTGRIGLCAIRVASQRKDIEIVAINSTAELETLLHLIRHDSVHGHFEAQLNADR 62
I++ ING GRIG R A +R DIEIVAIN + + + +++++DS HG F+ +
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKD 61
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
I + K I V +ERD L + +++ E TG F + E + H+ KKV+++ P
Sbjct: 62 GHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP 121
Query: 123 AQ-NTPTFVYGVNHKNYHNESVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYTND 181
++ NTP FV G N Y + ++SNASCTTN APL K++++ F + L+TT+H+ T
Sbjct: 122 SKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTAT 181
Query: 182 QNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLVD 240
Q +D HKD R R A N+IP+STG +KA+ VLP L K+TG+A RVPTPNVS+VD
Sbjct: 182 QKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVD 241
Query: 241 LSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTIG 300
L++ +K+ + ++ A+K A + KGV+ E+ +VS+DF +++ + +
Sbjct: 242 LTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALN 301
Query: 301 EKNAKVLAWYDNEMGYSERLIDMAQYIAQ 329
+ K+++WYDNE GYS +++D+ +I++
Sbjct: 302 DNFVKLVSWYDNETGYSNKVLDLIAHISK 330
>pdb|1GAE|O Chain O, Mol_id: 1; Molecule: D-Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: O, P; Ec: 1.2.1.12; Engineered:
Yes; Mutation: N313t; Other_details: Holo Form
pdb|1GAE|P Chain P, Mol_id: 1; Molecule: D-Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: O, P; Ec: 1.2.1.12; Engineered:
Yes; Mutation: N313t; Other_details: Holo Form
Length = 330
Score = 248 bits (632), Expect = 9e-67
Identities = 125/329 (37%), Positives = 200/329 (59%), Gaps = 2/329 (0%)
Query: 3 IRIAINGTGRIGLCAIRVASQRKDIEIVAINSTAELETLLHLIRHDSVHGHFEAQLNADR 62
I++ ING GRIG R A +R DIEIVAIN + + + +++++DS HG F+ +
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKD 61
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
I + K I V +ERD L + +++ E TG F + E + H+ KKV+++ P
Sbjct: 62 GHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP 121
Query: 123 AQ-NTPTFVYGVNHKNYHNESVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYTND 181
++ NTP FV G N Y + ++SNASCTTN APL K++++ F + L+TT+H+ T
Sbjct: 122 SKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTAT 181
Query: 182 QNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLVD 240
Q +D HKD R R A N+IP+STG +KA+ VLP L K+TG+A RVPTPNVS+VD
Sbjct: 182 QKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVD 241
Query: 241 LSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTIG 300
L++ +K+ + ++ A+K A + KGV+ E+ +VS+DF +++ + +
Sbjct: 242 LTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALN 301
Query: 301 EKNAKVLAWYDNEMGYSERLIDMAQYIAQ 329
+ K+++WYD E GYS +++D+ +I++
Sbjct: 302 DNFVKLVSWYDTETGYSNKVLDLIAHISK 330
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 245 bits (626), Expect = 4e-66
Identities = 134/327 (40%), Positives = 201/327 (60%), Gaps = 4/327 (1%)
Query: 4 RIAINGTGRIGLCAIRVASQRKDIEIVAINST-AELETLLHLIRHDSVHGHFEAQLNADR 62
+I ING GRIG +R A + ++VA+N LE ++++ ++DS HG F+ ++ A+
Sbjct: 2 KIGINGFGRIGRLVLRAALEM-GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAED 60
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
+ K I V +E + +S A AE I+E TG F ++E +SAH K KKVIISAP
Sbjct: 61 GALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP 120
Query: 123 AQNTPTFVYGVNHKNYHNE-SVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYTND 181
+ + P FV GVN + Y + V+SNASCTTN AP+ K+L E F++ L+TT+H+ T
Sbjct: 121 SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTAT 180
Query: 182 QNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLVD 240
Q +D KD R R A N+IP+STG +KA+ V+P L K+TG+A RVPTPNVS+VD
Sbjct: 181 QKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVD 240
Query: 241 LSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTIG 300
L++ K S ++ A+K A + +GV+ E+ +VS DF S+I + +
Sbjct: 241 LTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLS 300
Query: 301 EKNAKVLAWYDNEMGYSERLIDMAQYI 327
+ KV++WYDNE GYS+R+ID+ +++
Sbjct: 301 KTFVKVVSWYDNEFGYSQRVIDLIKHM 327
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 244 bits (624), Expect = 7e-66
Identities = 126/329 (38%), Positives = 196/329 (59%), Gaps = 2/329 (0%)
Query: 3 IRIAINGTGRIGLCAIRVASQRKDIEIVAINSTAELETLLHLIRHDSVHGHFEAQLNADR 62
I++ ING GRIG R A +R DIEIVAIN + + + +++DS HG F+ +
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYXAYXLKYDSTHGRFDGTVEVKD 61
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
I + K I V +ERD L + +++ E TG F + E + H+ KKV+ + P
Sbjct: 62 GHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVXTGP 121
Query: 123 AQ-NTPTFVYGVNHKNYHNESVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYTND 181
++ NTP FV G N Y + ++SNASCTTN APL K++++ F + L TT+H+ T
Sbjct: 122 SKDNTPXFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTVHATTAT 181
Query: 182 QNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLVD 240
Q +D HKD R R A N+IP+STG +KA+ VLP L K+TG A RVPTPNVS+VD
Sbjct: 182 QKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNVSVVD 241
Query: 241 LSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTIG 300
L++ +K+ + ++ A+K A + KGV+ E+ +VS+DF +++ + +
Sbjct: 242 LTVRLEKAATYEQIKAAVKAAAEGEXKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALN 301
Query: 301 EKNAKVLAWYDNEMGYSERLIDMAQYIAQ 329
+ K+++WYDNE GYS +++D+ +I++
Sbjct: 302 DNFVKLVSWYDNETGYSNKVLDLIAHISK 330
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 244 bits (623), Expect = 1e-65
Identities = 133/327 (40%), Positives = 200/327 (60%), Gaps = 4/327 (1%)
Query: 4 RIAINGTGRIGLCAIRVASQRKDIEIVAINST-AELETLLHLIRHDSVHGHFEAQLNADR 62
+I ING GRIG +R A + ++VA+N LE ++++ ++DS HG F+ ++ +
Sbjct: 2 KIGINGFGRIGRLVLRTALEM-GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKVED 60
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
+ K I V +E + +S A AE I+E TG F ++E +SAH K KKVIISAP
Sbjct: 61 GALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP 120
Query: 123 AQNTPTFVYGVNHKNYHNE-SVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYTND 181
+ + P FV GVN + Y + V+SNASCTTN AP+ K+L E F++ L+TT+H+ T
Sbjct: 121 SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTAT 180
Query: 182 QNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLVD 240
Q +D KD R R A N+IP+STG +KA+ V+P L K+TG+A RVPTPNVS+VD
Sbjct: 181 QKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVD 240
Query: 241 LSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTIG 300
L++ K S ++ A+K A + +GV+ E+ +VS DF S+I + +
Sbjct: 241 LTVRLGKECSYDDIKAAMKTASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLS 300
Query: 301 EKNAKVLAWYDNEMGYSERLIDMAQYI 327
+ KV++WYDNE GYS+R+ID+ +++
Sbjct: 301 KTFVKVVSWYDNEFGYSQRVIDLIKHM 327
>pdb|1GPD|G Chain G, D-Glyceraldehyde-3-Phosphate Dehydrogenase (E.C.1.2.1.12)
pdb|1GPD|R Chain R, D-Glyceraldehyde-3-Phosphate Dehydrogenase (E.C.1.2.1.12)
Length = 334
Score = 242 bits (617), Expect = 5e-65
Identities = 132/327 (40%), Positives = 201/327 (61%), Gaps = 4/327 (1%)
Query: 4 RIAINGTGRIGLCAIRVASQRKDIEIVAINST-AELETLLHLIRHDSVHGHFEAQLNADR 62
+I ING GRIG +R A ++VA+N LE ++++ ++DS HG F+ ++ +
Sbjct: 3 KIGINGFGRIGRLVLRAALSC-GAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKMED 61
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
+ K I V +E + +S A AE I+E TG F ++E +SAH K KKV+ISAP
Sbjct: 62 GALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAP 121
Query: 123 AQNTPTFVYGVNHKNYHNE-SVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYTND 181
+ + P FV GVN + Y + +V+SNASCTTN AP+ K+L E F++ L+TT+H+ T
Sbjct: 122 SADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTAT 181
Query: 182 QNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLVD 240
Q +D KD R R A N+IP+STG +KA+ V+P L K+TG+A RVPTP+VS+VD
Sbjct: 182 QKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSVVD 241
Query: 241 LSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTIG 300
L++ K S ++ A+K A + +G + E+ +VSSDFI S+I + +
Sbjct: 242 LTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLS 301
Query: 301 EKNAKVLAWYDNEMGYSERLIDMAQYI 327
+ KV++WYDNE GYS+R+ID+ +++
Sbjct: 302 KTFVKVVSWYDNEFGYSQRVIDLLKHM 328
>pdb|4GPD|1 Chain 1, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|2 Chain 2, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|3 Chain 3, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|4 Chain 4, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
Length = 333
Score = 242 bits (617), Expect = 5e-65
Identities = 132/327 (40%), Positives = 201/327 (61%), Gaps = 4/327 (1%)
Query: 4 RIAINGTGRIGLCAIRVASQRKDIEIVAINST-AELETLLHLIRHDSVHGHFEAQLNADR 62
+I ING GRIG +R A ++VA+N LE ++++ ++DS HG F+ ++ +
Sbjct: 2 KIGINGFGRIGRLVLRAALSC-GAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKMED 60
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
+ K I V +E + +S A AE I+E TG F ++E +SAH K KKV+ISAP
Sbjct: 61 GALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAP 120
Query: 123 AQNTPTFVYGVNHKNYHNE-SVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYTND 181
+ + P FV GVN + Y + +V+SNASCTTN AP+ K+L E F++ L+TT+H+ T
Sbjct: 121 SADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTAT 180
Query: 182 QNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLVD 240
Q +D KD R R A N+IP+STG +KA+ V+P L K+TG+A RVPTP+VS+VD
Sbjct: 181 QKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSVVD 240
Query: 241 LSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTIG 300
L++ K S ++ A+K A + +G + E+ +VSSDFI S+I + +
Sbjct: 241 LTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLS 300
Query: 301 EKNAKVLAWYDNEMGYSERLIDMAQYI 327
+ KV++WYDNE GYS+R+ID+ +++
Sbjct: 301 KTFVKVVSWYDNEFGYSQRVIDLLKHM 327
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3-Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3-Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 241 bits (615), Expect = 8e-65
Identities = 133/327 (40%), Positives = 200/327 (60%), Gaps = 4/327 (1%)
Query: 4 RIAINGTGRIGLCAIRVASQRKDIEIVAINST-AELETLLHLIRHDSVHGHFEAQLNADR 62
+I ING GRIG +R A + ++VA+N LE ++++ ++DS HG F+ ++ A+
Sbjct: 2 KIGINGFGRIGRLVLRAALEM-GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAED 60
Query: 63 TLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAP 122
+ K I V +E + +S A AE I+E TG F ++E +SAH K KKVIISAP
Sbjct: 61 GALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP 120
Query: 123 AQNTPTFVYGVNHKNYHNE-SVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYTND 181
+ + P FV GVN + Y + V+SNAS TTN AP+ K+L E F++ L+TT+H+ T
Sbjct: 121 SADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTVHAVTAT 180
Query: 182 QNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLVD 240
Q +D KD R R A N+IP+STG +KA+ V+P L K+TG+A RVPTPNVS+VD
Sbjct: 181 QKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVD 240
Query: 241 LSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTIG 300
L++ K S ++ A+K A + +GV+ E+ +VS DF S+I + +
Sbjct: 241 LTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLS 300
Query: 301 EKNAKVLAWYDNEMGYSERLIDMAQYI 327
+ KV++WYDNE GYS+R+ID+ +++
Sbjct: 301 KTFVKVVSWYDNEFGYSQRVIDLIKHM 327
>pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle D-
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 239 bits (611), Expect = 2e-64
Identities = 123/329 (37%), Positives = 194/329 (58%), Gaps = 3/329 (0%)
Query: 3 IRIAINGTGRIGLCAIRVASQRKDIEIVAINST-AELETLLHLIRHDSVHGHFEAQLNAD 61
+++ ++G GRIG R A ++IVAIN +L ++++ ++DS HG F + A+
Sbjct: 3 VKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAE 62
Query: 62 RTLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSAHLKNSVKKVIISA 121
+ K I + ERD + + A ++E TG F ++E + AHLK K+++ISA
Sbjct: 63 DGKLVIDGKAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRIVISA 122
Query: 122 PAQNTPTFVYGVNHKNYHNE-SVISNASCTTNASAPLLKILDEAFKVENALLTTIHSYTN 180
P+ + P FV GVNH Y N +ISNASCTTN APL K++ + F + L+TT+H+ T
Sbjct: 123 PSADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITA 182
Query: 181 DQNLLDTKHKDI-RRARAAGLNLIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLV 239
Q +D+ + R R A NLIP STG +KA+ V+P L K+TG+A RVPT NVS++
Sbjct: 183 TQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANVSVL 242
Query: 240 DLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFISSPFSAIVIDDQIMTI 299
DL+ +K ++ +K+A + KG++ E+ +VS DF S S+I + +
Sbjct: 243 DLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSDDFNGSNHSSIFDAGAGIEL 302
Query: 300 GEKNAKVLAWYDNEMGYSERLIDMAQYIA 328
+ K+++WYDNE GYSER++D+ ++A
Sbjct: 303 NDTFVKLVSWYDNEFGYSERVVDLMAHMA 331
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
Length = 359
Score = 223 bits (569), Expect = 2e-59
Identities = 133/353 (37%), Positives = 204/353 (57%), Gaps = 27/353 (7%)
Query: 1 MPIRIAINGTGRIGLCAIRVASQR----KDIEIVAI-NSTAELETLLHLIRHDSVHGHFE 55
MPI++ ING GRIG + + +I++VA+ + + E + +R+D+VHG F+
Sbjct: 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK 60
Query: 56 AQLNA---------DRTLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEAS 106
++ D TL + + + V ++R+ L + E +IE TG F + A+
Sbjct: 61 YEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAA 120
Query: 107 SAHLKNSVKKVIISAPAQN-TPTFVYGVNHKNYH--NESVISNASCTTNASAPLLKIL-D 162
HL+ +KV+ISAPA T V GVNH Y+ V+SNASCTTN AP++ +L
Sbjct: 121 EGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVK 180
Query: 163 EAFKVENALLTTIHSYTNDQNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLG 221
E F V+ L+TTIHSYT Q +D KD R RAA +N+IP++TG +KA+ +V+P
Sbjct: 181 EGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQ 240
Query: 222 PKVTGLAIRVPTPNVSLVDLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSD 281
K+TG++ RVPTP+VS+VDL+ + S + ALK A K KG++ +E LVS+D
Sbjct: 241 GKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSAD 300
Query: 282 FISSPFSAIVIDDQIMTI------GEKNAKVLAWYDNEMGYSERLIDMAQYIA 328
FI+ S+I D T+ + K+++WYDNE GYS R++D+ +++A
Sbjct: 301 FINDNRSSIY--DSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351
>pdb|1GGA|A Chain A, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|B Chain B, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|O Chain O, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|P Chain P, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|Q Chain Q, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|R Chain R, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
Length = 358
Score = 219 bits (558), Expect = 3e-58
Identities = 131/349 (37%), Positives = 197/349 (55%), Gaps = 23/349 (6%)
Query: 3 IRIAINGTGRIGLCAIRVASQR----KDIEIVAI-NSTAELETLLHLIRHDSVHGHFEAQ 57
I++ ING GRIG + +I++VA+ + + + +++DSVHG F+
Sbjct: 2 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 61
Query: 58 LNA---------DRTLNIGHSKNILVLSERDINKLDFSAANAEIIIECTGKFNSLEASSA 108
++ D TL + + + V ++R+ L + E +IE TG F A+
Sbjct: 62 VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 121
Query: 109 HLKNSVKKVIISAPAQN-TPTFVYGVNHKNYH--NESVISNASCTTNASAPLLKIL-DEA 164
HL+ +KV+ISAPA TFV GVNH NY+ + V+SNASCTTN APL+ +L E
Sbjct: 122 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEG 181
Query: 165 FKVENALLTTIHSYTNDQNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGPK 223
F + L+TT+HSYT Q +D KD R RAA LN+IP++TG +KA+ +V+P K
Sbjct: 182 FGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGK 241
Query: 224 VTGLAIRVPTPNVSLVDLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDFI 283
+TG+A RVPT +VS+VDL+ + S + ALK A K K ++ +E LVS+DFI
Sbjct: 242 LTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFI 301
Query: 284 SSPFSAIVIDDQIMTIGEKNA----KVLAWYDNEMGYSERLIDMAQYIA 328
S S+I + N K+++WYDNE GYS R++D+ +++A
Sbjct: 302 SDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 350
>pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 213 bits (541), Expect = 3e-56
Identities = 130/352 (36%), Positives = 201/352 (56%), Gaps = 27/352 (7%)
Query: 2 PIRIAINGTGRIGLCAIRVASQR----KDIEIVAI-NSTAELETLLHLIRHDSVHGHFEA 56
PI++ ING GRIG + + +I++VA+ + + E + ++HD+VHG +
Sbjct: 2 PIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKY 61
Query: 57 QLNADRTLNIGHSKNILVLS---------ERDINKLDFSAANAEIIIECTGKFNSLEASS 107
+ A ++ + ++LV++ +R+ L + + +IE TG F +
Sbjct: 62 TVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAE 121
Query: 108 AHLKNSVKKVIISAPAQN-TPTFVYGVNHKNYHNES--VISNASCTTNASAPLLKILD-E 163
H+K KKV+ISAPA T V GVN Y S V+SNASCTTN AP++ +L E
Sbjct: 122 GHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKE 181
Query: 164 AFKVENALLTTIHSYTNDQNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGP 222
F +E L+TTIHSYT Q +D KD R RAA +N+IP++TG +KA+ +V+P
Sbjct: 182 NFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKG 241
Query: 223 KVTGLAIRVPTPNVSLVDLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDF 282
K+TG++ RVPTP+VS+VDL+ + S + A+K A + KG++ +E LVS+DF
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADF 301
Query: 283 ISSPFSAIVIDDQIMTI-----GEKN-AKVLAWYDNEMGYSERLIDMAQYIA 328
I+ S++ D T+ GEK KV++WYDNE YS R++D+ +Y+A
Sbjct: 302 INDNRSSVY--DSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMA 351
>pdb|1GYP|A Chain A, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYP|B Chain B, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYP|C Chain C, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYP|D Chain D, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 213 bits (541), Expect = 3e-56
Identities = 130/352 (36%), Positives = 201/352 (56%), Gaps = 27/352 (7%)
Query: 2 PIRIAINGTGRIGLCAIRVASQR----KDIEIVAI-NSTAELETLLHLIRHDSVHGHFEA 56
PI++ ING GRIG + + +I++VA+ + + E + ++HD+VHG +
Sbjct: 2 PIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKY 61
Query: 57 QLNADRTLNIGHSKNILVLS---------ERDINKLDFSAANAEIIIECTGKFNSLEASS 107
+ A ++ + ++LV++ +R+ L + + +IE TG F +
Sbjct: 62 TVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAE 121
Query: 108 AHLKNSVKKVIISAPAQN-TPTFVYGVNHKNYHNES--VISNASCTTNASAPLLKILD-E 163
H+K KKV+ISAPA T V GVN Y S V+SNASCTTN AP++ +L E
Sbjct: 122 GHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKE 181
Query: 164 AFKVENALLTTIHSYTNDQNLLD-TKHKDIRRARAAGLNLIPTSTGVSKAISLVLPHLGP 222
F +E L+TTIHSYT Q +D KD R RAA +N+IP++TG +KA+ +V+P
Sbjct: 182 NFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKG 241
Query: 223 KVTGLAIRVPTPNVSLVDLSLNFKKSVSKASVQHALKDACKHAFKGVVSIDEERLVSSDF 282
K+TG++ RVPTP+VS+VDL+ + S + A+K A + KG++ +E LVS+DF
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADF 301
Query: 283 ISSPFSAIVIDDQIMTI-----GEKN-AKVLAWYDNEMGYSERLIDMAQYIA 328
I+ S++ D T+ GEK KV++WYDNE YS R++D+ +Y+A
Sbjct: 302 INDNRSSVY--DSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMA 351
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|B Chain B, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|C Chain C, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|D Chain D, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
Length = 314
Score = 25.4 bits (54), Expect = 9.3
Identities = 13/53 (24%), Positives = 25/53 (46%)
Query: 202 LIPTSTGVSKAISLVLPHLGPKVTGLAIRVPTPNVSLVDLSLNFKKSVSKASV 254
++ G+ A+++ L H P++ LAI N SL ++ N + A +
Sbjct: 6 ILDCDPGIDDAVAIFLAHGNPEIELLAITTVVGNQSLEKVTQNARLVADVAGI 58
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,672,917
Number of Sequences: 13198
Number of extensions: 60535
Number of successful extensions: 264
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 20
length of query: 330
length of database: 2,899,336
effective HSP length: 89
effective length of query: 241
effective length of database: 1,724,714
effective search space: 415656074
effective search space used: 415656074
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)