BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645960|ref|NP_208139.1| uracil-DNA glycosylase
(ung) [Helicobacter pylori 26695]
         (233 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1AKZ|    Human Uracil-Dna Glycosylase >gi|8569563|pdb|1E...   150  2e-37
pdb|1EUG|A  Chain A, Crystal Structure Of Escherichia Coli U...   148  5e-37
pdb|1UUG|A  Chain A, Escherichia Coli Uracil-Dna Glycosylase...   148  5e-37
pdb|1EUI|A  Chain A, Escherichia Coli Uracil-Dna Glycosylase...   148  5e-37
pdb|2SSP|E  Chain E, Leucine-272-Alanine Uracil-Dna Glycosyl...   148  6e-37
pdb|3EUG|A  Chain A, Crystal Structure Of Escherichia Coli U...   146  2e-36
pdb|1FLZ|A  Chain A, Uracil Dna Glycosylase With Uaap             146  2e-36
pdb|4SKN|E  Chain E, A Nucleotide-Flipping Mechanism From Th...   145  3e-36
pdb|4EUG|A  Chain A, Crystallographic And Enzymatic Studies ...   145  4e-36
pdb|2UUG|A  Chain A, Escherichia Coli Uracil-Dna Glycosylase...   145  5e-36
pdb|1UDH|    Mol_id: 1; Molecule: Uracil-Dna Glycosylase; Ch...   103  1e-23
>pdb|1AKZ|   Human Uracil-Dna Glycosylase
 pdb|1EMH|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase Bound To
           Uncleaved Substrate-Containing Dna
 pdb|1SSP|E Chain E, Wild-Type Uracil-Dna Glycosylase Bound To
           Uracil-Containing Dna
 pdb|1UGH|E Chain E, Crystal Structure Of Human Uracil-Dna Glycosylase In
           Complex With A Protein Inhibitor: Protein Mimicry Of Dna
 pdb|1EMJ|A Chain A, Uracil-Dna Glycosylase Bound To Dna Containing A 4'-Thio-
           2'deoxyuridine Analog Product
          Length = 223

 Score =  150 bits (378), Expect = 2e-37
 Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 12/223 (5%)

Query: 12  AWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQDP 71
           +W++ L  EF KPYF+++     E  K   T++P    +F    +     VK+++LGQDP
Sbjct: 7   SWKKHLSGEFGKPYFIKLMGFVAEERK-HYTVYPPPHQVFTWTQMCDIKDVKVVILGQDP 65

Query: 72  YHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANLGVPV-PCCGDLSAWAKR 130
           YH            A GL FSV++  P PPSL+NI+KEL  ++   V P  GDLS WAK+
Sbjct: 66  YHGPNQ--------AHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQ 117

Query: 131 GMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIPK 190
           G+LLLNA+L+V  +QA SH+  GWE F+D ++  L + +  L+ +L G  AQKK + I +
Sbjct: 118 GVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDR 177

Query: 191 NKHIIITAPHPSPLS--RGFLGSGVFTSVQKAYREVYRKDFDF 231
            +H ++   HPSPLS  RGF G   F+   +  ++  +K  D+
Sbjct: 178 KRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDW 220
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
           Glycosylase And Its Complexes With Uracil And Glycerol:
           Structure And Glycosylase Mechanism Revisited
          Length = 229

 Score =  148 bits (374), Expect = 5e-37
 Identities = 83/207 (40%), Positives = 118/207 (56%), Gaps = 11/207 (5%)

Query: 11  LAWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQD 70
           L W + L  E ++PYFL   +      +   TI+P   ++F A   T    VK+++LGQD
Sbjct: 5   LTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQD 64

Query: 71  PYHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAK 129
           PYH            A GL+FSV     IPPSL N++KEL   + G   P  G L +WA+
Sbjct: 65  PYHGP--------GQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWAR 116

Query: 130 RGMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIP 189
           +G+LLLN +L+V   QA SH  +GWE F+D+++  + +    ++ +L G  AQKK A+I 
Sbjct: 117 QGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID 176

Query: 190 KNKHIIITAPHPSPLS--RGFLGSGVF 214
           K +H ++ APHPSPLS  RGF G   F
Sbjct: 177 KQRHHVLKAPHPSPLSAHRGFFGCNHF 203
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
           With Wild-Type Udg And Wild-Type Ugi
 pdb|1UUG|C Chain C, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
           With Wild-Type Udg And Wild-Type Ugi
          Length = 229

 Score =  148 bits (374), Expect = 5e-37
 Identities = 83/207 (40%), Positives = 118/207 (56%), Gaps = 11/207 (5%)

Query: 11  LAWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQD 70
           L W + L  E ++PYFL   +      +   TI+P   ++F A   T    VK+++LGQD
Sbjct: 5   LTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQD 64

Query: 71  PYHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAK 129
           PYH            A GL+FSV     IPPSL N++KEL   + G   P  G L +WA+
Sbjct: 65  PYHGP--------GQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWAR 116

Query: 130 RGMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIP 189
           +G+LLLN +L+V   QA SH  +GWE F+D+++  + +    ++ +L G  AQKK A+I 
Sbjct: 117 QGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID 176

Query: 190 KNKHIIITAPHPSPLS--RGFLGSGVF 214
           K +H ++ APHPSPLS  RGF G   F
Sbjct: 177 KQRHHVLKAPHPSPLSAHRGFFGCNHF 203
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
           Uracil-Dna Glycosylase Inhibitor Protein
 pdb|1EUI|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
           Uracil-Dna Glycosylase Inhibitor Protein
          Length = 228

 Score =  148 bits (374), Expect = 5e-37
 Identities = 83/207 (40%), Positives = 118/207 (56%), Gaps = 11/207 (5%)

Query: 11  LAWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQD 70
           L W + L  E ++PYFL   +      +   TI+P   ++F A   T    VK+++LGQD
Sbjct: 4   LTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQD 63

Query: 71  PYHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAK 129
           PYH            A GL+FSV     IPPSL N++KEL   + G   P  G L +WA+
Sbjct: 64  PYHGP--------GQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWAR 115

Query: 130 RGMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIP 189
           +G+LLLN +L+V   QA SH  +GWE F+D+++  + +    ++ +L G  AQKK A+I 
Sbjct: 116 QGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID 175

Query: 190 KNKHIIITAPHPSPLS--RGFLGSGVF 214
           K +H ++ APHPSPLS  RGF G   F
Sbjct: 176 KQRHHVLKAPHPSPLSAHRGFFGCNHF 202
>pdb|2SSP|E Chain E, Leucine-272-Alanine Uracil-Dna Glycosylase Bound To Abasic
           Site-Containing Dna
          Length = 223

 Score =  148 bits (373), Expect = 6e-37
 Identities = 86/223 (38%), Positives = 129/223 (57%), Gaps = 12/223 (5%)

Query: 12  AWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQDP 71
           +W++ L  EF KPYF+++     E  K   T++P    +F    +     VK+++LGQDP
Sbjct: 7   SWKKHLSGEFGKPYFIKLMGFVAEERK-HYTVYPPPHQVFTWTQMCDIKDVKVVILGQDP 65

Query: 72  YHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANLGVPV-PCCGDLSAWAKR 130
           YH            A GL FSV++  P PPSL+NI+KEL  ++   V P  GDLS WAK+
Sbjct: 66  YHGPNQ--------AHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQ 117

Query: 131 GMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIPK 190
           G+LLLNA+L+V  +QA SH+  GWE F+D ++  L + +  L+ +L G  AQKK + I +
Sbjct: 118 GVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDR 177

Query: 191 NKHIIITAPHPSPLS--RGFLGSGVFTSVQKAYREVYRKDFDF 231
            +H ++   HPSP S  RGF G   F+   +  ++  +K  D+
Sbjct: 178 KRHHVLQTAHPSPASVYRGFFGCRHFSKTNELLQKSGKKPIDW 220
>pdb|3EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
           Glycosylase And Its Complexes With Uracil And Glycerol:
           Structure And Glycosylase Mechanism Revisited
 pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
           Glycosylase And Its Complexes With Uracil And Glycerol:
           Structure And Glycosylase Mechanism Revisited
          Length = 229

 Score =  146 bits (369), Expect = 2e-36
 Identities = 82/207 (39%), Positives = 118/207 (56%), Gaps = 11/207 (5%)

Query: 11  LAWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQD 70
           L W + L  E ++P+FL   +      +   TI+P   ++F A   T    VK+++LGQD
Sbjct: 5   LTWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQD 64

Query: 71  PYHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAK 129
           PYH            A GL+FSV     IPPSL N++KEL   + G   P  G L +WA+
Sbjct: 65  PYHGP--------GQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWAR 116

Query: 130 RGMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIP 189
           +G+LLLN +L+V   QA SH  +GWE F+D+++  + +    ++ +L G  AQKK A+I 
Sbjct: 117 QGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID 176

Query: 190 KNKHIIITAPHPSPLS--RGFLGSGVF 214
           K +H ++ APHPSPLS  RGF G   F
Sbjct: 177 KQRHHVLKAPHPSPLSAHRGFFGCNHF 203
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap
          Length = 228

 Score =  146 bits (369), Expect = 2e-36
 Identities = 82/207 (39%), Positives = 118/207 (56%), Gaps = 11/207 (5%)

Query: 11  LAWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQD 70
           L W + L  E ++P+FL   +      +   TI+P   ++F A   T    VK+++LGQD
Sbjct: 4   LTWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQD 63

Query: 71  PYHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAK 129
           PYH            A GL+FSV     IPPSL N++KEL   + G   P  G L +WA+
Sbjct: 64  PYHGP--------GQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWAR 115

Query: 130 RGMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIP 189
           +G+LLLN +L+V   QA SH  +GWE F+D+++  + +    ++ +L G  AQKK A+I 
Sbjct: 116 QGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID 175

Query: 190 KNKHIIITAPHPSPLS--RGFLGSGVF 214
           K +H ++ APHPSPLS  RGF G   F
Sbjct: 176 KQRHHVLKAPHPSPLSAHRGFFGCNHF 202
>pdb|4SKN|E Chain E, A Nucleotide-Flipping Mechanism From The Structure Of
           Human Uracil-Dna Glycosylase Bound To Dna
          Length = 223

 Score =  145 bits (367), Expect = 3e-36
 Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 12/223 (5%)

Query: 12  AWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQDP 71
           +W++ L  EF KPYF+++     E  K   T++P    +F    +     VK+++LGQ+P
Sbjct: 7   SWKKHLSGEFGKPYFIKLMGFVAEERK-HYTVYPPPHQVFTWTQMCDIKDVKVVILGQNP 65

Query: 72  YHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANLGVPV-PCCGDLSAWAKR 130
           YH            A GL FSV++  P PPSL+NI+KEL  ++   V P  GDLS WAK+
Sbjct: 66  YHGPNQ--------AHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQ 117

Query: 131 GMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIPK 190
           G+LLLNA+L+V  +QA SH+  GWE F+D ++  L + +  L+ +L G  AQKK + I +
Sbjct: 118 GVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDR 177

Query: 191 NKHIIITAPHPSPLS--RGFLGSGVFTSVQKAYREVYRKDFDF 231
            +H ++   HPSP S  RGF G   F+   +  ++  +K  D+
Sbjct: 178 KRHHVLQTAHPSPRSVYRGFFGCRHFSKTNELLQKSGKKPIDW 220
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
           Variant H187q Of Escherichia Coli Uracil Dna
           Glycosylase: Crystal Structures Of Mutant H187q And Its
           Uracil Complex
 pdb|5EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
           Variant H187q Of Escherichia Coli Uracil Dna
           Glycosylase: Crystal Structures Of Mutant H187q And Its
           Uracil Complex
          Length = 229

 Score =  145 bits (366), Expect = 4e-36
 Identities = 82/207 (39%), Positives = 117/207 (55%), Gaps = 11/207 (5%)

Query: 11  LAWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQD 70
           L W + L  E ++PYFL   +      +   TI+P   ++F A   T    VK+++LGQD
Sbjct: 5   LTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQD 64

Query: 71  PYHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAK 129
           PYH            A GL+FSV     IPPSL N++KEL   + G   P  G L +WA+
Sbjct: 65  PYHGP--------GQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWAR 116

Query: 130 RGMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIP 189
           +G+LLLN +L+V   QA SH  +GWE F+D+++  + +    ++ +L G  AQKK A+I 
Sbjct: 117 QGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID 176

Query: 190 KNKHIIITAPHPSPLS--RGFLGSGVF 214
           K +H ++ AP PSPLS  RGF G   F
Sbjct: 177 KQRHHVLKAPQPSPLSAHRGFFGCNHF 203
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
           With H187d Mutant Udg And Wild-Type Ugi
 pdb|2UUG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
           With H187d Mutant Udg And Wild-Type Ugi
          Length = 229

 Score =  145 bits (365), Expect = 5e-36
 Identities = 82/207 (39%), Positives = 117/207 (55%), Gaps = 11/207 (5%)

Query: 11  LAWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQD 70
           L W + L  E ++PYFL   +      +   TI+P   ++F A   T    VK+++LGQD
Sbjct: 5   LTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQD 64

Query: 71  PYHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAK 129
           PYH            A GL+FSV     IPPSL N++KEL   + G   P  G L +WA+
Sbjct: 65  PYHGP--------GQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWAR 116

Query: 130 RGMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIP 189
           +G+LLLN +L+V   QA SH  +GWE F+D+++  + +    ++ +L G  AQKK A+I 
Sbjct: 117 QGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID 176

Query: 190 KNKHIIITAPHPSPLS--RGFLGSGVF 214
           K +H ++ AP PSPLS  RGF G   F
Sbjct: 177 KQRHHVLKAPDPSPLSAHRGFFGCNHF 203
>pdb|1UDH|   Mol_id: 1; Molecule: Uracil-Dna Glycosylase; Chain: Null; Ec:
           3.2.2.3; Heterogen: Uracil; Other_details: Encoded By
           The Ul2 Orf Of Herpes Simplex Virus Type 1
 pdb|1UDG|   Mol_id: 1; Molecule: Uracil-Dna Glycosylase; Chain: Null; Ec:
           3.2.2.3; Other_details: Encoded By The Ul2 Orf Of Herpes
           Simplex Virus Type 1
 pdb|1LAU|E Chain E, Uracil-Dna Glycosylase
 pdb|1UDI|E Chain E, Mol_id: 1; Molecule: Uracil-Dna Glycosylase; Chain: E; Ec:
           3.2.2.3; Mol_id: 2; Molecule: Uracil-Dna Glycosylase
           Inhibitor Protein; Chain: I; Synonym: Ugi
          Length = 244

 Score =  103 bits (258), Expect = 1e-23
 Identities = 68/213 (31%), Positives = 102/213 (46%), Gaps = 11/213 (5%)

Query: 12  AWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPCAVKIILLGQDP 71
           AWR  ++ E   P    +   Y    +  + + P   ++F       P  V+++++GQDP
Sbjct: 31  AWRPLMEPELANPLTAHLLAEYNRRCQTEE-VLPPREDVFSWTRYCTPDEVRVVIIGQDP 89

Query: 72  YHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKEL-HANLGVPVPCCGDLSAWAKR 130
           YH            A GL+FSV  N P PPSL+N+   + +      +   G L  WA+ 
Sbjct: 90  YHHP--------GQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARD 141

Query: 131 GMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKVAQKKIALIPK 190
           G+LLLN  L+V++  AASH  IGW+ F   ++ RL      L+ +L G  AQ  I   P+
Sbjct: 142 GVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIRPDPR 201

Query: 191 NKHIIITAPHPSPLSRGFLGSGVFTSVQKAYRE 223
             H ++   HPSPLS+   G+     V   Y E
Sbjct: 202 -VHCVLKFSHPSPLSKVPFGTCQHFLVANRYLE 233
  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.322    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,314,282
Number of Sequences: 13198
Number of extensions: 49266
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 11
length of query: 233
length of database: 2,899,336
effective HSP length: 85
effective length of query: 148
effective length of database: 1,777,506
effective search space: 263070888
effective search space used: 263070888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)