BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645961|ref|NP_208140.1| 1-acyl-glycerol-3-phosphate
acyltransferase (plsC) [Helicobacter pylori 26695]
(240 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sul... 27 2.7
pdb|8OHM| Crystal Structure Of Rna Helicase From Genotype... 26 3.6
pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex ... 26 3.6
pdb|1HXM|B Chain B, Crystal Structure Of A Human Vgamma9VDE... 26 3.6
pdb|1JR6|A Chain A, Solution Structure Of An Engineered Arg... 26 4.7
pdb|1BDB| Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase ... 26 4.7
pdb|1HEI|A Chain A, Structure Of The Hepatitis C Virus Rna ... 26 4.7
pdb|1A1V|A Chain A, Hepatitis C Virus Ns3 Helicase Domain C... 26 4.7
pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotra... 26 4.7
pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus... 25 6.1
pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotra... 25 6.1
pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus... 25 6.1
>pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
pdb|1HY3|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
Length = 294
Score = 26.6 bits (57), Expect = 2.7
Identities = 12/27 (44%), Positives = 20/27 (73%), Gaps = 2/27 (7%)
Query: 216 WYEELQERMQKEYLK--HYHELNPSEQ 240
+YE+L+E ++KE +K H+ E PSE+
Sbjct: 191 FYEDLKEDIRKEVIKLIHFLERKPSEE 217
>pdb|8OHM| Crystal Structure Of Rna Helicase From Genotype 1b Hepatitis C
Virus: Mechanism Of Unwinding Duplex Rna
Length = 435
Score = 26.2 bits (56), Expect = 3.6
Identities = 13/23 (56%), Positives = 15/23 (64%), Gaps = 1/23 (4%)
Query: 87 HPRNICWIAKKELGEIPFYGHAL 109
HP NI +A GEIPFYG A+
Sbjct: 144 HP-NIEEVALSNTGEIPFYGKAI 165
>pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
pdb|1CU1|B Chain B, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
Length = 645
Score = 26.2 bits (56), Expect = 3.6
Identities = 13/23 (56%), Positives = 15/23 (64%), Gaps = 1/23 (4%)
Query: 87 HPRNICWIAKKELGEIPFYGHAL 109
HP NI +A GEIPFYG A+
Sbjct: 347 HP-NIEEVALSNTGEIPFYGKAI 368
>pdb|1HXM|B Chain B, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|D Chain D, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|F Chain F, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|H Chain H, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 242
Score = 26.2 bits (56), Expect = 3.6
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 154 GEKFLPFKQGAKIIAEKFQLKI----QPMVLINSIKIFNSKPLEAYKARTRLVMLESYTP 209
G+K F G K+I QL +P + + SI + KA T L +LE + P
Sbjct: 107 GKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIA-----ETKLQKAGTYLCLLEKFFP 161
Query: 210 DFNSPTWYEE 219
D W E+
Sbjct: 162 DVIKIHWEEK 171
>pdb|1JR6|A Chain A, Solution Structure Of An Engineered Arginine-Rich
Subdomain 2 Of The Hepatitis C Virus Ns3 Rna Helicase
Length = 142
Score = 25.8 bits (55), Expect = 4.7
Identities = 13/23 (56%), Positives = 15/23 (64%), Gaps = 1/23 (4%)
Query: 87 HPRNICWIAKKELGEIPFYGHAL 109
HP NI +A GEIPFYG A+
Sbjct: 11 HP-NIEEVALSTTGEIPFYGKAI 32
>pdb|1BDB| Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From Pseudomonas
Sp. Lb400
Length = 277
Score = 25.8 bits (55), Expect = 4.7
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 123 KGIVSLLKACKEKLDQNRPLVIFPEGTRG----KGGEKFLPFKQGAKIIAEKFQLKIQPM 178
KG + +KAC L +R VIF G GG + K + + ++ P
Sbjct: 117 KGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAFELAPY 176
Query: 179 VLINSI 184
V +N +
Sbjct: 177 VRVNGV 182
>pdb|1HEI|A Chain A, Structure Of The Hepatitis C Virus Rna Helicase Domain
pdb|1HEI|B Chain B, Structure Of The Hepatitis C Virus Rna Helicase Domain
Length = 451
Score = 25.8 bits (55), Expect = 4.7
Identities = 13/23 (56%), Positives = 15/23 (64%), Gaps = 1/23 (4%)
Query: 87 HPRNICWIAKKELGEIPFYGHAL 109
HP NI +A GEIPFYG A+
Sbjct: 154 HP-NIEEVALSTTGEIPFYGKAI 175
>pdb|1A1V|A Chain A, Hepatitis C Virus Ns3 Helicase Domain Complexed With
Single Stranded Dna
Length = 476
Score = 25.8 bits (55), Expect = 4.7
Identities = 13/23 (56%), Positives = 15/23 (64%), Gaps = 1/23 (4%)
Query: 87 HPRNICWIAKKELGEIPFYGHAL 109
HP NI +A GEIPFYG A+
Sbjct: 168 HP-NIEEVALSTTGEIPFYGKAI 189
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
Length = 385
Score = 25.8 bits (55), Expect = 4.7
Identities = 13/42 (30%), Positives = 22/42 (51%)
Query: 182 NSIKIFNSKPLEAYKARTRLVMLESYTPDFNSPTWYEELQER 223
+++ N+K LE + LV L + PDF++P +E R
Sbjct: 14 DAVVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARR 55
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 188 NSKPLEAYKARTRLVMLESYTPDFNSPTWYEELQER 223
N+K LE + LV L + PDF++P +E R
Sbjct: 20 NAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARR 55
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
Length = 385
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 188 NSKPLEAYKARTRLVMLESYTPDFNSPTWYEELQER 223
N+K LE + LV L + PDF++P +E R
Sbjct: 20 NAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARR 55
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 188 NSKPLEAYKARTRLVMLESYTPDFNSPTWYEELQER 223
N+K LE + LV L + PDF++P +E R
Sbjct: 20 NAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARR 55
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.139 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,355,119
Number of Sequences: 13198
Number of extensions: 54732
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 12
length of query: 240
length of database: 2,899,336
effective HSP length: 86
effective length of query: 154
effective length of database: 1,764,308
effective search space: 271703432
effective search space used: 271703432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)