BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645962|ref|NP_208141.1| hypothetical protein
[Helicobacter pylori 26695]
(387 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli... 30 0.35
pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (... 27 3.9
pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6... 27 3.9
pdb|1H4I|A Chain A, Methylobacterium Extorquens Methanol De... 26 8.7
pdb|1H4J|A Chain A, Methylobacterium Extorquens Methanol De... 26 8.7
>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|B Chain B, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|C Chain C, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|D Chain D, Putrescine Receptor (Potf) From E. Coli
Length = 344
Score = 30.4 bits (67), Expect = 0.35
Identities = 24/84 (28%), Positives = 44/84 (51%), Gaps = 18/84 (21%)
Query: 39 AHEPEEIKAKVAYVKIPQLEDLENNPVYIGQIIGVT--YDLLLFDAEFLEAKIKDG---- 92
A+ +E KV Y + ++N V G+++ + +DL++ A FLE ++ G
Sbjct: 21 ANFEKETGIKVVY------DVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQP 74
Query: 93 LDKTQIELLNKMPKWKKVEKELFR 116
LDK+ K+P+WK ++ EL +
Sbjct: 75 LDKS------KLPEWKNLDPELLK 92
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 26.9 bits (58), Expect = 3.9
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 10 MSFFAHPIKILKIISLILSFLVSFLVAENAHEPEEIKAK--VAYVKIPQ---------LE 58
M+F H ++L +S + F+ S L AHE E ++ + V K+P+ E
Sbjct: 275 MAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKE 334
Query: 59 DLENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLNKMP 105
+E G+ IG DL + +FL ++D D T +L+K P
Sbjct: 335 GIEMLRA-AGKEIGDFEDLSTENEKFLGKLVRDKYD-TDFYILDKFP 379
>pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASZ|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASY|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
pdb|1ASY|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
Length = 490
Score = 26.9 bits (58), Expect = 3.9
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 10 MSFFAHPIKILKIISLILSFLVSFLVAENAHEPEEIKAK--VAYVKIPQ---------LE 58
M+F H ++L +S + F+ S L AHE E ++ + V K+P+ E
Sbjct: 278 MAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKE 337
Query: 59 DLENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLNKMP 105
+E G+ IG DL + +FL ++D D T +L+K P
Sbjct: 338 GIEMLRA-AGKEIGDFEDLSTENEKFLGKLVRDKYD-TDFYILDKFP 382
>pdb|1H4I|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4I|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase
Length = 599
Score = 25.8 bits (55), Expect = 8.7
Identities = 23/89 (25%), Positives = 35/89 (38%), Gaps = 8/89 (8%)
Query: 148 SIAPKVTLQVTDLSKNPRYANVM---AKDL--QVLQYKTK---DYDDKNNILVMEIAFKE 199
++ V L+ ++P Y M AKD+ + Y + YD K + M I
Sbjct: 356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHIC 415
Query: 200 ATWEDFHIKEAIKQGFDNASLNQIKAKEG 228
WE F + Q F A+LN +G
Sbjct: 416 MDWEPFMLPYRAGQFFVGATLNMYPGPKG 444
>pdb|1H4J|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|E Chain E, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|G Chain G, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
Length = 599
Score = 25.8 bits (55), Expect = 8.7
Identities = 23/89 (25%), Positives = 35/89 (38%), Gaps = 8/89 (8%)
Query: 148 SIAPKVTLQVTDLSKNPRYANVM---AKDL--QVLQYKTK---DYDDKNNILVMEIAFKE 199
++ V L+ ++P Y M AKD+ + Y + YD K + M I
Sbjct: 356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHIC 415
Query: 200 ATWEDFHIKEAIKQGFDNASLNQIKAKEG 228
WE F + Q F A+LN +G
Sbjct: 416 MDWEPFMLPYRAGQFFVGATLNMYPGPKG 444
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.141 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,104,784
Number of Sequences: 13198
Number of extensions: 83775
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 5
length of query: 387
length of database: 2,899,336
effective HSP length: 90
effective length of query: 297
effective length of database: 1,711,516
effective search space: 508320252
effective search space used: 508320252
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)