BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645964|ref|NP_208143.1| hypothetical protein
[Helicobacter pylori 26695]
(290 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma... 28 1.2
pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Act... 27 2.1
pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 ... 27 2.7
pdb|1AAB| Nmr Structure Of Rat Hmg1 Hmga Fragment 27 2.7
pdb|1HIG|A Chain A, Interferon-Gamma >gi|229989|pdb|1HIG|B ... 27 2.7
pdb|1FG9|A Chain A, 3:1 Complex Of Interferon-Gamma Recepto... 27 2.7
pdb|1CKT|A Chain A, Crystal Structure Of Hmg1 Domain A Boun... 27 2.7
pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-... 27 3.6
pdb|1KZY|C Chain C, Crystal Structure Of The 53bp1 Brct Reg... 27 3.6
pdb|1GZH|B Chain B, Crystal Structure Of The Brct Domains O... 27 3.6
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A ... 26 4.7
pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferred... 25 8.0
pdb|1FRN| Ferredoxin: Nadp+ Oxidoreductase (Ferredoxin Re... 25 8.0
pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferred... 25 8.0
pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferred... 25 8.0
>pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|D Chain D, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 258
Score = 28.1 bits (61), Expect = 1.2
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 21/139 (15%)
Query: 25 NIAENPERYLGIFRPTKPKT--KLLQNLLTSHEIKFGDAFEYLIEQYLKEHNFSPLSKKI 82
++A+N +LGI + K ++ K++Q+ + S K F+ + K +
Sbjct: 22 DVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKD-DQSIQKSVETIKEDMNV 80
Query: 83 PYYNKNKEKRESLELDQLAKKDNTYYFIEQKMRDDHDSAKKRGQIDNFERKLEALIHRYG 142
++N NK+KR+ E +L T +++K D+ L ++ G
Sbjct: 81 KFFNSNKKKRDDFE--KLTNYSVTDLNVQRKAIDE----------------LIQVMAELG 122
Query: 143 ENIQGYFYFIDESLNKNQN 161
N+ G F E+L K N
Sbjct: 123 ANVSGEFVKEAENLKKYFN 141
Score = 26.9 bits (58), Expect = 2.7
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 25 NIAENPERYLGIFRPTKPKT--KLLQNLLTSHEIKFGDAFEYLIEQYLKEHNFSPLSKKI 82
++A+N +LGI + K ++ K++Q+ + S K F+ + K +
Sbjct: 146 DVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKD-DQSIQKSVETIKEDMNV 204
Query: 83 PYYNKNKEKRESLE 96
++N NK+KR+ E
Sbjct: 205 KFFNSNKKKRDDFE 218
>pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
pdb|1EKU|A Chain A, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
Length = 265
Score = 27.3 bits (59), Expect = 2.1
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 25 NIAENPERYLGIFRPTKPKT--KLLQNLLTSHEIKFGDAFEYLIEQYLKEHNFSPLSKKI 82
++A+N +LGI + K ++ K++Q+ + S K F+ + K +
Sbjct: 22 DVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKD-DQSIQKSVETIKEDMNV 80
Query: 83 PYYNKNKEKRESLELDQLAKKDNTYYFIEQKMRDDHDSAKKRGQIDNFERKLEALIHRYG 142
++N NK+KR+ E +L T +++K D+ + E + E +
Sbjct: 81 KFFNSNKKKRDDFE--KLTNYSVTDLNVQRKAIDELIQVMAE---FSTEEQQEGPYVKEA 135
Query: 143 ENIQGYF 149
EN++ YF
Sbjct: 136 ENLKKYF 142
Score = 26.9 bits (58), Expect = 2.7
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 25 NIAENPERYLGIFRPTKPKT--KLLQNLLTSHEIKFGDAFEYLIEQYLKEHNFSPLSKKI 82
++A+N +LGI + K ++ K++Q+ + S K F+ + K +
Sbjct: 148 DVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKD-DQSIQKSVETIKEDMNV 206
Query: 83 PYYNKNKEKRESLE 96
++N NK+KR+ E
Sbjct: 207 KFFNSNKKKRDDFE 220
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 26.9 bits (58), Expect = 2.7
Identities = 25/90 (27%), Positives = 39/90 (42%), Gaps = 11/90 (12%)
Query: 152 IDESLNKNQNYYKEELQKLSVGYGVPLRLCYGKELFENLNILQVWDEVLNHLARWREILP 211
I++S+ YK+E+ + G PLRLC +F L + H+A I+P
Sbjct: 675 INKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLL-----MHSLTKHMAFRSGIVP 729
Query: 212 D----LPSLNFDENPLESFREIKDLAPSVY 237
N + PL+ IK++ P VY
Sbjct: 730 SDHRASALNNLESLPLKYL--IKNIYPDVY 757
>pdb|1AAB| Nmr Structure Of Rat Hmg1 Hmga Fragment
Length = 83
Score = 26.9 bits (58), Expect = 2.7
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Query: 67 EQYLKEH-----NFSPLSKKIPYYNKNKEKRESLELDQLAKKDNTYYFIEQK 113
E++ K+H NFS SKK K +E + + +AK D Y E K
Sbjct: 24 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 75
>pdb|1HIG|A Chain A, Interferon-Gamma
pdb|1HIG|B Chain B, Interferon-Gamma
pdb|1HIG|C Chain C, Interferon-Gamma
pdb|1HIG|D Chain D, Interferon-Gamma
Length = 138
Score = 26.9 bits (58), Expect = 2.7
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 25 NIAENPERYLGIFRPTKPKT--KLLQNLLTSHEIKFGDAFEYLIEQYLKEHNFSPLSKKI 82
++A+N +LGI + K ++ K++Q+ + S K F+ + K +
Sbjct: 21 DVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKD-DQSIQKSVETIKEDMNV 79
Query: 83 PYYNKNKEKRESLE 96
++N NK+KR+ E
Sbjct: 80 KFFNSNKKKRDDFE 93
>pdb|1FG9|A Chain A, 3:1 Complex Of Interferon-Gamma Receptor With
Interferon- Gamma Dimer
pdb|1FG9|B Chain B, 3:1 Complex Of Interferon-Gamma Receptor With
Interferon- Gamma Dimer
Length = 134
Score = 26.9 bits (58), Expect = 2.7
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 25 NIAENPERYLGIFRPTKPKT--KLLQNLLTSHEIKFGDAFEYLIEQYLKEHNFSPLSKKI 82
++A+N +LGI + K ++ K++Q+ + S K F+ + K +
Sbjct: 22 DVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKD-DQSIQKSVETIKEDMNV 80
Query: 83 PYYNKNKEKRESLE 96
++N NK+KR+ E
Sbjct: 81 KFFNSNKKKRDDFE 94
>pdb|1CKT|A Chain A, Crystal Structure Of Hmg1 Domain A Bound To A Cisplatin-
Modified Dna Duplex
Length = 71
Score = 26.9 bits (58), Expect = 2.7
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Query: 67 EQYLKEH-----NFSPLSKKIPYYNKNKEKRESLELDQLAKKDNTYYFIEQK 113
E++ K+H NFS SKK K +E + + +AK D Y E K
Sbjct: 18 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 69
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 26.6 bits (57), Expect = 3.6
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 59 GDAF-EYLIEQYLKEHNFSPLSKKIPYYNKNKEKRESLELDQLAK-KDNTYYFIEQKMRD 116
GD+F EYL++QYL H + YY+ ++ E ++ LA+ K ++ ++I ++ +
Sbjct: 241 GDSFYEYLLKQYLLTH-------ETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQG 293
Query: 117 DH 118
H
Sbjct: 294 LH 295
>pdb|1KZY|C Chain C, Crystal Structure Of The 53bp1 Brct Region Complexed To
Tumor Suppressor P53
pdb|1KZY|D Chain D, Crystal Structure Of The 53bp1 Brct Region Complexed To
Tumor Suppressor P53
Length = 259
Score = 26.6 bits (57), Expect = 3.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 187 FENLNILQVWDEVLNHLARWREIL 210
F+NL +L V D+ N L W EIL
Sbjct: 156 FQNLKVLLVSDQQQNFLELWSEIL 179
>pdb|1GZH|B Chain B, Crystal Structure Of The Brct Domains Of Human 53bp1 Bound
To The P53 Tumor Supressor
pdb|1GZH|D Chain D, Crystal Structure Of The Brct Domains Of Human 53bp1 Bound
To The P53 Tumor Supressor
Length = 249
Score = 26.6 bits (57), Expect = 3.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 187 FENLNILQVWDEVLNHLARWREIL 210
F+NL +L V D+ N L W EIL
Sbjct: 146 FQNLKVLLVSDQQQNFLELWSEIL 169
>pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
pdb|1G9U|A Chain A, Crystal Structure Of Yopm-Leucine Rich Effector Protein
From Yersinia Pestis
Length = 454
Score = 26.2 bits (56), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (57%)
Query: 201 NHLARWREILPDLPSLNFDENPLESFREIKD 231
NHLA E+ +L L+ + NPL F +I +
Sbjct: 347 NHLAEVPELPQNLKQLHVEYNPLREFPDIPE 377
>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312q
Length = 314
Score = 25.4 bits (54), Expect = 8.0
Identities = 9/26 (34%), Positives = 19/26 (72%)
Query: 85 YNKNKEKRESLELDQLAKKDNTYYFI 110
Y + + + ++EL ++ KKDNTY+++
Sbjct: 246 YIQTRMAQYAVELWEMLKKDNTYFYM 271
>pdb|1FRN| Ferredoxin: Nadp+ Oxidoreductase (Ferredoxin Reductase)
(E.C.1.18.1.2) Mutant With Ser 96 Replaced By Val And
Recombinant Variant With Phe As Residue 269 (S96v,269f)
Length = 314
Score = 25.4 bits (54), Expect = 8.0
Identities = 9/26 (34%), Positives = 19/26 (72%)
Query: 85 YNKNKEKRESLELDQLAKKDNTYYFI 110
Y + + + ++EL ++ KKDNTY+++
Sbjct: 246 YIQTRMAQYAVELWEMLKKDNTYFYM 271
>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312l
Length = 314
Score = 25.4 bits (54), Expect = 8.0
Identities = 9/26 (34%), Positives = 19/26 (72%)
Query: 85 YNKNKEKRESLELDQLAKKDNTYYFI 110
Y + + + ++EL ++ KKDNTY+++
Sbjct: 246 YIQTRMAQYAVELWEMLKKDNTYFYM 271
>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312a
Length = 314
Score = 25.4 bits (54), Expect = 8.0
Identities = 9/26 (34%), Positives = 19/26 (72%)
Query: 85 YNKNKEKRESLELDQLAKKDNTYYFI 110
Y + + + ++EL ++ KKDNTY+++
Sbjct: 246 YIQTRMAQYAVELWEMLKKDNTYFYM 271
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,755,170
Number of Sequences: 13198
Number of extensions: 78444
Number of successful extensions: 179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 18
length of query: 290
length of database: 2,899,336
effective HSP length: 87
effective length of query: 203
effective length of database: 1,751,110
effective search space: 355475330
effective search space used: 355475330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)