BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644766|ref|NP_206936.1| bacterioferritin
comigratory protein (bcp) [Helicobacter pylori 26695]
(152 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys ... 54 6e-09
pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood... 50 1e-07
pdb|1E2Y|G Chain G, Tryparedoxin Peroxidase From Crithidia ... 41 5e-05
pdb|1KYG|A Chain A, X-Ray Crystal Structure Of Ahpc >gi|201... 40 1e-04
pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme >... 39 3e-04
pdb|1IHM|B Chain B, Crystal Structure Analysis Of Norwalk V... 25 5.1
pdb|1JF3|A Chain A, Crystal Structure Of Component Iii Glyc... 24 6.6
pdb|1CQ3|A Chain A, Structure Of A Soluble Secreted Chemoki... 24 6.6
pdb|1CLE|A Chain A, Esterase, SubstratePRODUCT-Bound Mol_id... 24 6.6
pdb|1KYO|I Chain I, Yeast Cytochrome Bc1 Complex With Bound... 24 8.7
pdb|1HD2|A Chain A, Human Peroxiredoxin 5 >gi|16975155|pdb|... 24 8.7
>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23.
pdb|1QQ2|B Chain B, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23
Length = 199
Score = 54.3 bits (129), Expect = 6e-09
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 5 EVGQLAPDFR----LKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEF 60
++G AP F+ + + +ISL D K VV +FYP D T C E FS EF
Sbjct: 7 KIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEF 66
Query: 61 EKKNAVVVGISPDNAQSHQKFISQCS-------LNVILLCDEDKKAANLYKAYGKRMLYG 113
+K N V+G S D+ SH +I+ +N+ L+ D + A Y +L
Sbjct: 67 KKLNCQVIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDY-----GVLKA 121
Query: 114 KEHLGIIRSTFIINTQGVLEKCFYN 138
E + R FII+ +G+L + N
Sbjct: 122 DEGIS-FRGLFIIDDKGILRQITIN 145
>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|B Chain B, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|C Chain C, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|D Chain D, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|E Chain E, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|F Chain F, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|G Chain G, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|H Chain H, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|I Chain I, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|J Chain J, Thioredoxin Peroxidase B From Red Blood Cells
Length = 197
Score = 50.1 bits (118), Expect = 1e-07
Identities = 48/143 (33%), Positives = 69/143 (47%), Gaps = 16/143 (11%)
Query: 6 VGQLAPDFRLKNS-DGV--EISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEK 62
+G+ APDF+ DG E+ L D K VVL+FYP D T E FS +F K
Sbjct: 7 IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVXPTEIIAFSNRAEDFRK 66
Query: 63 KNAVVVGISPDNAQSHQKFISQ-------CSLNVILLCDEDKKAANLYKAYGKRMLYGKE 115
V+G+S D+ +H +I+ LN+ LL D ++ L + YG +L E
Sbjct: 67 LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRR---LSEDYG--VLKTDE 121
Query: 116 HLGIIRSTFIINTQGVLEKCFYN 138
+ R FII+ +GVL + N
Sbjct: 122 GIA-YRGLFIIDGKGVLRQITVN 143
>pdb|1E2Y|G Chain G, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|B Chain B, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|C Chain C, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|I Chain I, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|H Chain H, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|D Chain D, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|J Chain J, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|E Chain E, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|F Chain F, Tryparedoxin Peroxidase From Crithidia Fasciculata
Length = 188
Score = 41.2 bits (95), Expect = 5e-05
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 22 EISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGISPDNAQSHQKF 81
++SL K VVL+FYP D T C E FS F + N V+ S D+ SH ++
Sbjct: 28 KVSLSSYKGKYVVLFFYPXDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQW 87
Query: 82 IS----QCSLNVILLCDEDKKAANLYKAYGKRMLYGKEHLGIIRSTFIINTQGVLEKCFY 137
S + L + K + +AYG + ++ R FII+ G L +
Sbjct: 88 TSVDRKKGGLGPXAIPXLADKTKAIARAYG---VLDEDSGVAYRGVFIIDPNGKLRQIII 144
Query: 138 N 138
N
Sbjct: 145 N 145
>pdb|1KYG|A Chain A, X-Ray Crystal Structure Of Ahpc
pdb|1KYG|D Chain D, X-Ray Crystal Structure Of Ahpc
pdb|1KYG|B Chain B, X-Ray Crystal Structure Of Ahpc
pdb|1KYG|E Chain E, X-Ray Crystal Structure Of Ahpc
pdb|1KYG|C Chain C, X-Ray Crystal Structure Of Ahpc
Length = 186
Score = 40.0 bits (92), Expect = 1e-04
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 16 KNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGISPDNA 75
KN + +E++ KD + V +FYP D T C E D + + E +K V +S D
Sbjct: 16 KNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTH 75
Query: 76 QSHQKFISQ----CSLNVILLCDEDKKAANLYKAYGKRMLYGKEHLGII-RSTFIINTQG 130
+H+ + S + ++ D A + +E G+ R+TF+++ QG
Sbjct: 76 FTHKAWHSSSETIAKIKYAMIGDPT-------GALTRNFDNMREDEGLADRATFVVDPQG 128
Query: 131 VLE 133
+++
Sbjct: 129 IIQ 131
>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme
pdb|1PRX|B Chain B, Horf6 A Novel Human Peroxidase Enzyme
Length = 224
Score = 38.9 bits (89), Expect = 3e-04
Identities = 24/76 (31%), Positives = 39/76 (50%), Gaps = 2/76 (2%)
Query: 4 LEVGQLAPDFRLKNSDGVEISLKDLLHKKV-VLYFYPKDNTPGCTLEAKDFSALFSEFEK 62
L +G +AP+F + G I D L +L+ +P+D TP T E + L EF K
Sbjct: 5 LLLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVXTTELGRAAKLAPEFAK 63
Query: 63 KNAVVVGISPDNAQSH 78
+N ++ +S D+ + H
Sbjct: 64 RNVKLIALSIDSVEDH 79
>pdb|1IHM|B Chain B, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|A Chain A, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|C Chain C, Crystal Structure Analysis Of Norwalk Virus Capsid
Length = 530
Score = 24.6 bits (52), Expect = 5.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 68 VGISPDNAQSHQKFISQCSLN 88
+GISPDN QS Q +C+L+
Sbjct: 253 MGISPDNVQSVQFQNGRCTLD 273
>pdb|1JF3|A Chain A, Crystal Structure Of Component Iii Glycera Dibranchiata
Monomeric Hemoglobin
pdb|1JL7|A Chain A, Crystal Structure Of Cn-Ligated Component Iii Glycera
Dibranchiata Monomeric Hemoglobin
Length = 147
Score = 24.3 bits (51), Expect = 6.6
Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 6/72 (8%)
Query: 51 KDFSALFSEFEKKNAVVVGIS----PDNAQSHQKFISQCSLNVILLCDEDKKAANLYKAY 106
K+ + F + A V G S P A+ K ++Q + V L DE K A + KA
Sbjct: 28 KECLSKFISAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEM-KAV 86
Query: 107 GKRML-YGKEHL 117
G R YG +H+
Sbjct: 87 GVRHKGYGNKHI 98
>pdb|1CQ3|A Chain A, Structure Of A Soluble Secreted Chemokine Inhibitor, Vcci,
From Cowpox Virus
pdb|1CQ3|B Chain B, Structure Of A Soluble Secreted Chemokine Inhibitor, Vcci,
From Cowpox Virus
Length = 233
Score = 24.3 bits (51), Expect = 6.6
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 57 FSEFEKKNAVVVGISPDNAQSHQ--------KFISQCSLNVILLCDEDKKAANL--YKAY 106
+S+ NA + +SP + I C +++ + C E++K +N+ +
Sbjct: 97 YSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVL 156
Query: 107 GKRMLYGKEHLGIIRSTFIINTQGVLEKCFYNVK 140
G + + K I + I++T KC N++
Sbjct: 157 GSNISHKKVSYEDIIGSTIVDT-----KCVKNLE 185
>pdb|1CLE|A Chain A, Esterase, SubstratePRODUCT-Bound Mol_id: 1; Molecule:
Cholesterol Esterase; Chain: A, B; Heterogen:
Cholesteryl Linoleate
pdb|1CLE|B Chain B, Esterase, SubstratePRODUCT-Bound Mol_id: 1; Molecule:
Cholesterol Esterase; Chain: A, B; Heterogen:
Cholesteryl Linoleate
Length = 534
Score = 24.3 bits (51), Expect = 6.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 38 YPKDNTPGCTLEAKDFSALFSEFEKKNAVV 67
YP+D T G + F+A+ +F++ +AV+
Sbjct: 381 YPQDITQGSPFDTGIFNAITPQFKRISAVL 410
>pdb|1KYO|I Chain I, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|T Chain T, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 57
Score = 23.9 bits (50), Expect = 8.7
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 53 FSALFSEFEKKNAVVVG 69
FS+L+ F K+NAV VG
Sbjct: 2 FSSLYKTFFKRNAVFVG 18
>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
Length = 161
Score = 23.9 bits (50), Expect = 8.7
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 4 LEVGQLAPDFRL-KNSDGVEISLKDLLH-KKVVLYFYPKDNTPGCT 47
++VG P + + G +++L +L KK VL+ P TPGC+
Sbjct: 3 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCS 48
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 870,062
Number of Sequences: 13198
Number of extensions: 32821
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 11
length of query: 152
length of database: 2,899,336
effective HSP length: 80
effective length of query: 72
effective length of database: 1,843,496
effective search space: 132731712
effective search space used: 132731712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)