BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646203|ref|NP_208145.1| hypothetical protein
[Helicobacter pylori 26695]
         (315 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1DXY|    Structure Of D-2-Hydroxyisocaproate Dehydrogenase     26  5.2
pdb|1EOE|A  Chain A, Crystal Structure Of The V135r Mutant O...    26  6.8
pdb|1T1D|A  Chain A, Crystal Structure Of The Tetramerizatio...    26  6.8
pdb|1EOF|A  Chain A, Crystal Structure Of The N136a Mutant O...    26  6.8
pdb|1A68|    Crystal Structure Of The Tetramerization Domain...    26  6.8
pdb|1EOD|A  Chain A, Crystal Structure Of The N136d Mutant O...    26  6.8
pdb|1FT3|B  Chain B, Crystal Structure Of Truncated Rhogdi K...    25  8.9

>pdb|1DXY|   Structure Of D-2-Hydroxyisocaproate Dehydrogenase
          Length = 333

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 10/43 (23%), Positives = 25/43 (57%), Gaps = 4/43 (9%)

Query: 149 LKNDYPKILFTNNKDLFRALSLLGIELIGL----HVLNQESLN 187
           +K D+P   + + +DLF+   ++ + + G+    H++N+ + N
Sbjct: 179 MKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFN 221



>pdb|1EOE|A Chain A, Crystal Structure Of The V135r Mutant Of A Shaker T1
           Domain
          Length = 100

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 135 LLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRAL 168
           LL +P  R RY D L+N+Y    F  N+  F A+
Sbjct: 26  LLGNPQKRNRYYDPLRNEY---FFDRNRPSFDAI 56



>pdb|1T1D|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
           Shaker Potassium Channel
          Length = 100

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 135 LLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRAL 168
           LL +P  R RY D L+N+Y    F  N+  F A+
Sbjct: 26  LLGNPQKRNRYYDPLRNEY---FFDRNRPSFDAI 56



>pdb|1EOF|A Chain A, Crystal Structure Of The N136a Mutant Of A Shaker T1
           Domain
          Length = 100

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 135 LLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRAL 168
           LL +P  R RY D L+N+Y    F  N+  F A+
Sbjct: 26  LLGNPQKRNRYYDPLRNEY---FFDRNRPSFDAI 56



>pdb|1A68|   Crystal Structure Of The Tetramerization Domain Of The Shaker
           Potassium Channel
          Length = 95

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 135 LLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRAL 168
           LL +P  R RY D L+N+Y    F  N+  F A+
Sbjct: 27  LLGNPQKRNRYYDPLRNEY---FFDRNRPSFDAI 57



>pdb|1EOD|A Chain A, Crystal Structure Of The N136d Mutant Of A Shaker T1
           Domain
          Length = 100

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 135 LLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRAL 168
           LL +P  R RY D L+N+Y    F  N+  F A+
Sbjct: 26  LLGNPQKRNRYYDPLRNEY---FFDRNRPSFDAI 56



>pdb|1FT3|B Chain B, Crystal Structure Of Truncated Rhogdi K141a Mutant
 pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant
          Length = 139

 Score = 25.4 bits (54), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (61%), Gaps = 1/24 (4%)

Query: 224 YINHSAYFRGVSQEIYDYRIGGYG 247
           YI H+ Y +GV  +  DY +G YG
Sbjct: 63  YIQHT-YRKGVKIDATDYMVGSYG 85



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.318    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,113,514
Number of Sequences: 13198
Number of extensions: 97472
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 7
length of query: 315
length of database: 2,899,336
effective HSP length: 88
effective length of query: 227
effective length of database: 1,737,912
effective search space: 394506024
effective search space used: 394506024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)