BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645969|ref|NP_208149.1| phosphatidylserine
decarboxylase proenzyme (psd) [Helicobacter pylori 26695]
(267 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L7W|A Chain A, 1:1 Complex Between Alpha-Lactalbumin A... 27 2.4
pdb|1DPE| Dipeptide-Binding Protein 27 3.2
pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With ... 27 3.2
pdb|1J94|A Chain A, Crystal Structure Of Lactose Synthase, ... 26 5.4
pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (... 25 7.1
pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6... 25 7.1
pdb|1DJS|A Chain A, Ligand-Binding Portion Of Fibroblast Gr... 25 9.2
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex Wi... 25 9.2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mu... 25 9.2
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgf... 25 9.2
pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mu... 25 9.2
>pdb|1L7W|A Chain A, 1:1 Complex Between Alpha-Lactalbumin And Beta-1,4-
Galactosyltransferase In The Presence Of Udp-N-
Acetylgalactosamine
pdb|1L7W|C Chain C, 1:1 Complex Between Alpha-Lactalbumin And Beta-1,4-
Galactosyltransferase In The Presence Of Udp-N-
Acetylgalactosamine
Length = 123
Score = 26.9 bits (58), Expect = 2.4
Identities = 18/44 (40%), Positives = 23/44 (51%), Gaps = 7/44 (15%)
Query: 62 KERPFDKSPNICIAPCDALITECAFLDNDSA-----LQIKGMPY 100
K F +S NIC CD L+ + LD+D A L IKG+ Y
Sbjct: 62 KSSEFPESENICGISCDKLLDD--ELDDDIACAKKILAIKGIDY 103
>pdb|1DPE| Dipeptide-Binding Protein
Length = 507
Score = 26.6 bits (57), Expect = 3.2
Identities = 14/52 (26%), Positives = 24/52 (45%)
Query: 173 VAKDIQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVK 224
+A+ Q + + + LNVG + +N K + K R TY+ N +K
Sbjct: 245 IARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIK 296
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|C Chain C, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|E Chain E, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|G Chain G, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 26.6 bits (57), Expect = 3.2
Identities = 14/52 (26%), Positives = 24/52 (45%)
Query: 173 VAKDIQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVK 224
+A+ Q + + + LNVG + +N K + K R TY+ N +K
Sbjct: 245 IARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIK 296
>pdb|1J94|A Chain A, Crystal Structure Of Lactose Synthase, Complex With Udp
pdb|1J94|C Chain C, Crystal Structure Of Lactose Synthase, Complex With Udp
Length = 123
Score = 25.8 bits (55), Expect = 5.4
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 7/44 (15%)
Query: 62 KERPFDKSPNICIAPCDALITECAFLDNDSA-----LQIKGMPY 100
K F +S NIC CD L+ + LD+D A + IKG+ Y
Sbjct: 62 KSSEFPESENICGISCDKLLDD--ELDDDIACAKKIVAIKGIDY 103
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 25.4 bits (54), Expect = 7.1
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 122 YLSPKDYHHYHAPCDL--------EILEARYFAGKLLPVNKPSLHKNNNLFVGNERV 170
YL+ K + H P L + E YF GK P +K + ERV
Sbjct: 191 YLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERV 247
>pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASZ|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASY|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
pdb|1ASY|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
Length = 490
Score = 25.4 bits (54), Expect = 7.1
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 122 YLSPKDYHHYHAPCDL--------EILEARYFAGKLLPVNKPSLHKNNNLFVGNERV 170
YL+ K + H P L + E YF GK P +K + ERV
Sbjct: 194 YLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERV 250
>pdb|1DJS|A Chain A, Ligand-Binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 25.0 bits (53), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Query: 239 VLFIQNTAFKDLKEKNVKFGESIG-EFHA 266
VL+I+N F+D E G SIG FH+
Sbjct: 180 VLYIRNVTFEDAGEYTCLAGNSIGISFHS 208
>pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 25.0 bits (53), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Query: 239 VLFIQNTAFKDLKEKNVKFGESIG-EFHA 266
VL+I+N F+D E G SIG FH+
Sbjct: 180 VLYIRNVTFEDAGEYTCLAGNSIGISFHS 208
>pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 25.0 bits (53), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Query: 239 VLFIQNTAFKDLKEKNVKFGESIG-EFHA 266
VL+I+N F+D E G SIG FH+
Sbjct: 180 VLYIRNVTFEDAGEYTCLAGNSIGISFHS 208
>pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 25.0 bits (53), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Query: 239 VLFIQNTAFKDLKEKNVKFGESIG-EFHA 266
VL+I+N F+D E G SIG FH+
Sbjct: 179 VLYIRNVTFEDAGEYTCLAGNSIGISFHS 207
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 25.0 bits (53), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Query: 239 VLFIQNTAFKDLKEKNVKFGESIG-EFHA 266
VL+I+N F+D E G SIG FH+
Sbjct: 180 VLYIRNVTFEDAGEYTCLAGNSIGISFHS 208
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.139 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,536,761
Number of Sequences: 13198
Number of extensions: 64701
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 11
length of query: 267
length of database: 2,899,336
effective HSP length: 87
effective length of query: 180
effective length of database: 1,751,110
effective search space: 315199800
effective search space used: 315199800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)