BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645971|ref|NP_208151.1| hypothetical protein
[Helicobacter pylori 26695]
         (183 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JS8|A  Chain A, Structure Of A Functional Unit From Oct...    27  1.1
pdb|1G61|A  Chain A, Crystal Structure Of M.Jannaschii Eif6 ...    26  3.1
pdb|2ILK|    Crystal Structure Of Human Interleukin-10 At 1....    25  5.3
pdb|1LK3|A  Chain A, Engineered Human Interleukin-10 Monomer...    25  5.3
pdb|1ILK|    Interleukin-10                                        25  5.3
pdb|1EA0|A  Chain A, Alpha Subunit Of A. Brasilense Glutamat...    25  6.9
pdb|1M5S|A  Chain A, Formylmethanofuran:tetrahydromethanopte...    25  6.9

>pdb|1JS8|A Chain A, Structure Of A Functional Unit From Octopus Hemocyanin
 pdb|1JS8|B Chain B, Structure Of A Functional Unit From Octopus Hemocyanin
          Length = 394

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 29/131 (22%)

Query: 62  FDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRITA------L 115
           FD+   G+D+  LN    T+                 L+E+L E++ +DR+ A      +
Sbjct: 258 FDYHKLGYDYDNLNFHGMTIP---------------ELEEHLKEIQHEDRVFAGFLLRTI 302

Query: 116 GHGL-----ICLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYD 170
           G        +C K        T+   C+L G+   F+   R   +   T +  L +  +D
Sbjct: 303 GQSADVNFDVCTKDGECTFGGTF---CILGGEHEMFWAFDRLFKYDITTSLKHLRLDAHD 359

Query: 171 SFIVHSERKGL 181
            F +    KG+
Sbjct: 360 DFDIKVTIKGI 370



>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6
 pdb|1G61|B Chain B, Crystal Structure Of M.Jannaschii Eif6
          Length = 228

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 4/45 (8%)

Query: 90  KLEKLESLLLKENLLELEQ---KDRITALGHGLICLKKSSLIAPQ 131
           +L+++++ L KEN L+L     K + TALG+ ++   K +LI+P+
Sbjct: 80  ELDRIKNFL-KENNLDLNVEIIKSKNTALGNLILTNDKGALISPE 123



>pdb|2ILK|   Crystal Structure Of Human Interleukin-10 At 1.6 Angstroms
           Resolution
 pdb|1J7V|L Chain L, Human Il-10  IL-10r1 Complex
 pdb|1INR|   Cytokine Synthesis
          Length = 160

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (65%)

Query: 79  DTLELLKALYFKLEKLESLLLKENLLE 105
           D    +K  +   ++L++LLLKE+LLE
Sbjct: 28  DAFSRVKTFFQMKDQLDNLLLKESLLE 54



>pdb|1LK3|A Chain A, Engineered Human Interleukin-10 Monomer Complexed To 9d7
           Fab Fragment
 pdb|1LK3|B Chain B, Engineered Human Interleukin-10 Monomer Complexed To 9d7
           Fab Fragment
          Length = 160

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (65%)

Query: 79  DTLELLKALYFKLEKLESLLLKENLLE 105
           D    +K  +   ++L++LLLKE+LLE
Sbjct: 22  DAFSRVKTFFQMKDQLDNLLLKESLLE 48



>pdb|1ILK|   Interleukin-10
          Length = 151

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (65%)

Query: 79  DTLELLKALYFKLEKLESLLLKENLLE 105
           D    +K  +   ++L++LLLKE+LLE
Sbjct: 19  DAFSRVKTFFQMKDQLDNLLLKESLLE 45



>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
 pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
          Length = 1479

 Score = 24.6 bits (52), Expect = 6.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 11/47 (23%)

Query: 109 KDRITALGH---------GLICLKKSSLIAPQTYYGRCVLEGKILAF 146
           KD +  +GH         G + L + SL A +    RC++E +ILAF
Sbjct: 56  KDHVKVIGHRAPDNKLAVGQVFLPRISLDAQEAC--RCIVETEILAF 100



>pdb|1M5S|A Chain A, Formylmethanofuran:tetrahydromethanopterin
          Fromyltransferase From Methanosarcina Barkeri
 pdb|1M5S|B Chain B, Formylmethanofuran:tetrahydromethanopterin
          Fromyltransferase From Methanosarcina Barkeri
 pdb|1M5S|C Chain C, Formylmethanofuran:tetrahydromethanopterin
          Fromyltransferase From Methanosarcina Barkeri
 pdb|1M5S|D Chain D, Formylmethanofuran:tetrahydromethanopterin
          Fromyltransferase From Methanosarcina Barkeri
          Length = 297

 Score = 24.6 bits (52), Expect = 6.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 23 LVLRSQALGFETRLVQCDLSFSYERFISKSK 53
          LV  ++A GF T ++ C      ER  S S+
Sbjct: 34 LVAATEATGFATSVIMCPAEAGIERLASPSE 64



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.326    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 929,470
Number of Sequences: 13198
Number of extensions: 32246
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 7
length of query: 183
length of database: 2,899,336
effective HSP length: 83
effective length of query: 100
effective length of database: 1,803,902
effective search space: 180390200
effective search space used: 180390200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)