BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644767|ref|NP_206937.1| hypothetical protein
[Helicobacter pylori 26695]
(211 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 33 0.032
pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Pro... 30 0.27
pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Te... 30 0.27
pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Sna... 30 0.27
pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma... 27 1.3
pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Pro... 27 1.8
pdb|2PAH|A Chain A, Tetrameric Human Phenylalanine Hydroxyl... 26 3.0
pdb|1DMW|A Chain A, Crystal Structure Of Double Truncated H... 26 3.0
pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocyste... 26 3.0
pdb|1J8T|A Chain A, Catalytic Domain Of Human Phenylalanine... 26 3.0
pdb|3PAH| Human Phenylalanine Hydroxylase Catalytic Domai... 26 3.0
pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Act... 26 3.9
pdb|1HIG|A Chain A, Interferon-Gamma >gi|229989|pdb|1HIG|B ... 26 3.9
pdb|1FG9|A Chain A, 3:1 Complex Of Interferon-Gamma Recepto... 26 3.9
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 26 3.9
pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesi... 26 3.9
pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed... 25 5.1
pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREON... 25 5.1
pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalani... 25 5.1
pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermo... 25 6.7
pdb|1IDM| 3-Isopropylmalate Dehydrogenase, Loop-Deleted C... 25 8.7
pdb|1XAA| 3-Isopropylmalate Dehydrogenase, Low Temperatur... 25 8.7
pdb|1XAC| Chimera Isopropylmalate Dehydrogenase Between B... 25 8.7
pdb|1IPD| 3-Isopropylmalate Dehydrogenase (E.C.1.1.1.85) 25 8.7
pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh)... 25 8.7
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 32.7 bits (73), Expect = 0.032
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 6 ILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHF--QVLNKAEVIESAKENLEQA 63
I + ++E + KH+ A+P K E E+L+ + K +V +K + IE + E E+
Sbjct: 47 IAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ-EEG 105
Query: 64 ILKALENFKSKKILHSTDLNLNFEAFKDFTLQPYD------------KEIEAMREELFEI 111
+ ++ + + +K HST E ++ D EI E+
Sbjct: 106 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEEL 165
Query: 112 DTALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNLSE 162
+ L G I + G+I + S S + LS I ++K E+ +R L +
Sbjct: 166 EDMLESGNPAIFASGII--MDSSISKQALSEIETRHSEIIKLENSIRELHD 214
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 29.6 bits (65), Expect = 0.27
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 154 ESIVRNLSEGMQALKNQSQNGALPTNMLLIGGPSRTADIELKT 196
ES ++ +E ++AL +Q +P+N +++GG S+ + L T
Sbjct: 88 ESGIKQAAENIKALIDQEVKNGIPSNRIILGGFSQGGALSLYT 130
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 29.6 bits (65), Expect = 0.27
Identities = 21/77 (27%), Positives = 41/77 (52%), Gaps = 3/77 (3%)
Query: 6 ILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHF--QVLNKAEVIESAKENLEQA 63
I + ++E + KH+ A+P K E E+L+ + K +V +K + IE + E E+
Sbjct: 21 IAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ-EEG 79
Query: 64 ILKALENFKSKKILHST 80
+ ++ + + +K HST
Sbjct: 80 LNRSSADLRIRKTQHST 96
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 29.6 bits (65), Expect = 0.27
Identities = 21/77 (27%), Positives = 41/77 (52%), Gaps = 3/77 (3%)
Query: 6 ILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHF--QVLNKAEVIESAKENLEQA 63
I + ++E + KH+ A+P K E E+L+ + K +V +K + IE + E E+
Sbjct: 24 IAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ-EEG 82
Query: 64 ILKALENFKSKKILHST 80
+ ++ + + +K HST
Sbjct: 83 LNRSSADLRIRKTQHST 99
>pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|D Chain D, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 258
Score = 27.3 bits (59), Expect = 1.3
Identities = 27/102 (26%), Positives = 45/102 (43%), Gaps = 9/102 (8%)
Query: 8 KRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKA 67
K I E A GAN + EF E K + ++V ++ L ILK
Sbjct: 109 KAIDELIQVMAELGAN------VSGEFVKEAENLKKYFNAGHSDVADNG--TLFLGILKN 160
Query: 68 LENFKSKKILHSTDLNLNFEAFKDF-TLQPYDKEIEAMREEL 108
+ +KI+ S ++ F+ FK+F Q K +E ++E++
Sbjct: 161 WKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDM 202
Score = 25.8 bits (55), Expect = 3.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 64 ILKALENFKSKKILHSTDLNLNFEAFKDF-TLQPYDKEIEAMREEL 108
ILK + +KI+ S ++ F+ FK+F Q K +E ++E++
Sbjct: 33 ILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDM 78
>pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Prolyl Dipeptidyl
Aminopeptidase From Lactococcus Lactis
Length = 763
Score = 26.9 bits (58), Expect = 1.8
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 26/122 (21%)
Query: 8 KRIKEARAKHAI--QGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAIL 65
K + E AKHA +GA+ + ++F + + Y ++L++ NL IL
Sbjct: 481 KALPEGHAKHAFLHRGAHIYMNSWQSIDFSETINAYFVAKLLDR-----DLNLNLPPVIL 535
Query: 66 KALENFKSKKILHSTDLNLNFEA-----------------FKDFTLQPYDKEIEAMREEL 108
+ EN K + D N + + D T + Y K+ +++L
Sbjct: 536 Q--ENSKDQVWTMMNDFGANTQIKLPLGKTAVSFAQFDNNYDDETFKKYSKDFNVFKKDL 593
Query: 109 FE 110
FE
Sbjct: 594 FE 595
>pdb|2PAH|A Chain A, Tetrameric Human Phenylalanine Hydroxylase
pdb|2PAH|B Chain B, Tetrameric Human Phenylalanine Hydroxylase
Length = 335
Score = 26.2 bits (56), Expect = 3.0
Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 8/58 (13%)
Query: 23 NPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKALENFKSKKILHST 80
+P+YR K +F D+ Y+H Q + + E +E K+ FK+ K L+ T
Sbjct: 34 DPVYRARRK-QFADIAYNYRHGQPIPRVEYMEEEKKTWGTV-------FKTLKSLYKT 83
>pdb|1DMW|A Chain A, Crystal Structure Of Double Truncated Human
Phenylalanine Hydroxylase With Bound
7,8-Dihydro-L-Biopterin
Length = 307
Score = 26.2 bits (56), Expect = 3.0
Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 8/58 (13%)
Query: 23 NPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKALENFKSKKILHST 80
+P+YR K +F D+ Y+H Q + + E +E K+ FK+ K L+ T
Sbjct: 34 DPVYRARRK-QFADIAYNYRHGQPIPRVEYMEEEKKTWGTV-------FKTLKSLYKT 83
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT7|B Chain B, Oxidized Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT8|A Chain A, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
pdb|1LT8|B Chain B, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
Length = 406
Score = 26.2 bits (56), Expect = 3.0
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 43 HFQVLNKAEVIESAKENLEQAILKALENFKSKKILHSTDLNLNFEAFKDFTLQPYDKE-- 100
HF + ++ KE LE A LKA + S+ + + T + N + F D P+ E
Sbjct: 218 HFDPTISLKTVKLMKEGLEAAQLKA--HLMSQPLAYHTP-DANKQGFIDLPEFPFGLEPR 274
Query: 101 ------IEAMREELFEIDTALLHGVCGISSLGMIGAVSSHASP 137
I+ E + + + G CG I A++ +P
Sbjct: 275 VATRWDIQKYAREAYNLGVRYIGGCCGFEPY-HIRAIAEELAP 316
>pdb|1J8T|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase
Fe(Ii)
pdb|1J8U|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase
Fe(Ii) In Complex With Tetrahydrobiopterin
pdb|1LRM|A Chain A, Crystal Structure Of Binary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase With
Dihydrobiopterin (Bh2)
Length = 325
Score = 26.2 bits (56), Expect = 3.0
Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 8/58 (13%)
Query: 23 NPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKALENFKSKKILHST 80
+P+YR K +F D+ Y+H Q + + E +E K+ FK+ K L+ T
Sbjct: 49 DPVYRARRK-QFADIAYNYRHGQPIPRVEYMEEEKKTWGTV-------FKTLKSLYKT 98
>pdb|3PAH| Human Phenylalanine Hydroxylase Catalytic Domain Dimer With
Bound Adrenaline Inhibitor
pdb|4PAH| Human Phenylalanine Hydroxylase Catalytic Domain Dimer With
Bound Nor-Adrenaline Inhibitor
pdb|1PAH| Human Phenylalanine Hydroxylase Dimer, Residues 117 - 424
pdb|5PAH| Human Phenylalanine Hydroxylase Catalytic Domain Dimer With
Bound Dopamine Inhibitor
pdb|6PAH| Human Phenylalanine Hydroxylase Catalytic Domain Dimer With
Bound L-Dopa (3,4-Dihydroxyphenylalanine) Inhibitor
Length = 308
Score = 26.2 bits (56), Expect = 3.0
Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 8/58 (13%)
Query: 23 NPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKALENFKSKKILHST 80
+P+YR K +F D+ Y+H Q + + E +E K+ FK+ K L+ T
Sbjct: 35 DPVYRARRK-QFADIAYNYRHGQPIPRVEYMEEEKKTWGTV-------FKTLKSLYKT 84
>pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
pdb|1EKU|A Chain A, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
Length = 265
Score = 25.8 bits (55), Expect = 3.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 64 ILKALENFKSKKILHSTDLNLNFEAFKDF-TLQPYDKEIEAMREEL 108
ILK + +KI+ S ++ F+ FK+F Q K +E ++E++
Sbjct: 33 ILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDM 78
Score = 25.8 bits (55), Expect = 3.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 64 ILKALENFKSKKILHSTDLNLNFEAFKDF-TLQPYDKEIEAMREEL 108
ILK + +KI+ S ++ F+ FK+F Q K +E ++E++
Sbjct: 159 ILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDM 204
>pdb|1HIG|A Chain A, Interferon-Gamma
pdb|1HIG|B Chain B, Interferon-Gamma
pdb|1HIG|C Chain C, Interferon-Gamma
pdb|1HIG|D Chain D, Interferon-Gamma
Length = 138
Score = 25.8 bits (55), Expect = 3.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 64 ILKALENFKSKKILHSTDLNLNFEAFKDF-TLQPYDKEIEAMREEL 108
ILK + +KI+ S ++ F+ FK+F Q K +E ++E++
Sbjct: 32 ILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDM 77
>pdb|1FG9|A Chain A, 3:1 Complex Of Interferon-Gamma Receptor With Interferon-
Gamma Dimer
pdb|1FG9|B Chain B, 3:1 Complex Of Interferon-Gamma Receptor With Interferon-
Gamma Dimer
Length = 134
Score = 25.8 bits (55), Expect = 3.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 64 ILKALENFKSKKILHSTDLNLNFEAFKDF-TLQPYDKEIEAMREEL 108
ILK + +KI+ S ++ F+ FK+F Q K +E ++E++
Sbjct: 33 ILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDM 78
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 25.8 bits (55), Expect = 3.9
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 14 RAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKALENFKS 73
R + + A I++ + E ++ Y + K +V + ++++LKA++ FK
Sbjct: 254 RMEDGDEEALKIWKRFREFSIEKYIDTYARLNI--KYDVYSGESQVSKESMLKAIDLFKE 311
Query: 74 KKILH 78
K + H
Sbjct: 312 KGLTH 316
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp
Length = 368
Score = 25.8 bits (55), Expect = 3.9
Identities = 35/150 (23%), Positives = 63/150 (41%), Gaps = 10/150 (6%)
Query: 48 NKAEVIESAKENL----EQAILKALENFKSKKILHSTDLNL-NFEAFKDFTLQPYDKEIE 102
NK VI E + + + + LE +K+ +T +N + + F++ + KE
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 103 AMREELFEIDTALLHGVCGISSLGMIGAVSSHASPR---LLSLITLNCII--LLKKESIV 157
EEL +I L + G ++G GAV A SL+TL +I L+++ V
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 158 RNLSEGMQALKNQSQNGALPTNMLLIGGPS 187
+ + S G T+++ P+
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPA 339
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|B Chain B, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|C Chain C, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|D Chain D, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|E Chain E, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|F Chain F, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|G Chain G, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|H Chain H, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|I Chain I, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|J Chain J, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|K Chain K, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|L Chain L, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|M Chain M, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|N Chain N, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|O Chain O, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|P Chain P, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|Q Chain Q, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|R Chain R, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|S Chain S, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|T Chain T, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|U Chain U, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|V Chain V, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|W Chain W, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|X Chain X, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|A Chain A, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|B Chain B, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|C Chain C, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|D Chain D, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|E Chain E, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|F Chain F, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|G Chain G, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|H Chain H, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|I Chain I, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|J Chain J, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|K Chain K, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|L Chain L, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|M Chain M, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|N Chain N, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|O Chain O, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|P Chain P, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|Q Chain Q, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|R Chain R, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|S Chain S, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|T Chain T, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|U Chain U, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|V Chain V, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|W Chain W, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|X Chain X, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
Length = 477
Score = 25.4 bits (54), Expect = 5.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 82 LNLNFEAFKDFTLQPYDKEIE--AMREELFEIDTAL 115
LN+NF FTL+PY ++ A + E + I T +
Sbjct: 88 LNINFFVHDPFTLEPYSRDPRNIARKAENYLISTGI 123
>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|B Chain B, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
Length = 80
Score = 25.4 bits (54), Expect = 5.1
Identities = 14/47 (29%), Positives = 27/47 (56%), Gaps = 2/47 (4%)
Query: 33 EFEDLVEEYKHFQVLNKAEVIESAKENLEQAILKALENFKSKKILHS 79
EF + E++ ++L + + +S ++ QA+L LE + SKK +S
Sbjct: 26 EFTGMPEQWA--RLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNS 70
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 25.4 bits (54), Expect = 5.1
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 NPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIESAKE 58
+P+YR K +F D+ Y+H Q + + E E K+
Sbjct: 151 DPVYRARRK-QFADIAYNYRHGQPIPRVEYTEEEKQ 185
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-
Isopropylmalate Dehydrogenase Mutated At 172th From Ala
To Gly
Length = 345
Score = 25.0 bits (53), Expect = 6.7
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 10 IKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIE 54
+ EA A + + + P + +V FE + KH ++KA V+E
Sbjct: 146 MSEAEAWNTERYSKPEVERVARVAFEGARKRRKHVVSVDKANVLE 190
>pdb|1IDM| 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 10 IKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIE 54
+ EA A + + + P + +V FE + KH ++KA V+E
Sbjct: 144 MSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE 188
>pdb|1XAA| 3-Isopropylmalate Dehydrogenase, Low Temperature (100k) Structure
pdb|1XAB| 3-Isopropylmalate Dehydrogenase, Low Temperature (150k) Structure
pdb|1HEX| 3-Isopropylmalate Dehydrogenase (E.C.1.1.1.85) Complexed With
Beta-Nicotinamide Adenine Dinucleotide, Oxidized (Nad+)
pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
Length = 345
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 10 IKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIE 54
+ EA A + + + P + +V FE + KH ++KA V+E
Sbjct: 146 MSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE 190
>pdb|1XAC| Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis
(M) And Thermus Thermophilus (T) From N-Terminal: 20% T
Middle 20% M Residual 60% T, Mutated At S82r. Low
Temperature (100k) Structure.
pdb|1XAD| Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis
(M) And Thermus Thermophilus (T) From N-Terminal: 20% T
Middle 20% M Residual 60% T, Mutated At S82r. Low
Temperature (150k) Structure
Length = 345
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 10 IKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIE 54
+ EA A + + + P + +V FE + KH ++KA V+E
Sbjct: 146 MSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE 190
>pdb|1IPD| 3-Isopropylmalate Dehydrogenase (E.C.1.1.1.85)
Length = 345
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 10 IKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIE 54
+ EA A + + + P + +V FE + KH ++KA V+E
Sbjct: 146 MSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE 190
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 10 IKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAEVIE 54
+ EA A + + + P + +V FE + KH ++KA V+E
Sbjct: 146 MSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE 190
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,039,738
Number of Sequences: 13198
Number of extensions: 36664
Number of successful extensions: 137
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 27
length of query: 211
length of database: 2,899,336
effective HSP length: 84
effective length of query: 127
effective length of database: 1,790,704
effective search space: 227419408
effective search space used: 227419408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)