BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645975|ref|NP_208155.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(466 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KYH|A Chain A, Structural Genomics, Hypothetical Prote... 82 1e-16
pdb|1JZT|A Chain A, Crystal Structure Of Yeast Hypothetical... 38 0.002
pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mu... 29 1.3
pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY ... 29 1.3
pdb|1PVD|A Chain A, Pyruvate Decarboxylase (Pdc) (E.C.4.1.1... 29 1.3
pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazo... 28 1.7
pdb|1FIY| Three-Dimensional Structure Of Phosphoenolpyruv... 28 2.2
pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Ki... 28 2.9
>pdb|1KYH|A Chain A, Structural Genomics, Hypothetical Protein In Sigy-Cydd
Intergenic Region
Length = 276
Score = 82.0 bits (201), Expect = 1e-16
Identities = 78/237 (32%), Positives = 111/237 (45%), Gaps = 25/237 (10%)
Query: 222 LPLRDRKNAHKGDYGHAHVLLGKHS--GAGLLSALSALSFGSGVVSVQALEC-------- 271
LP RD ++ HKG YG A +L G GA LL+ L A G G + + E
Sbjct: 15 LPERDAES-HKGTYGTALLLAGSDDXPGAALLAGLGAXRSGLGKLVIGTSENVIPLIVPV 73
Query: 272 --EITSNNKPLELVFCENFPNLLSAFALGMGL---ENIPKDFNKWLEL-APCVLDAGVFY 325
E T + A A+G GL E++ + + L P +LDAG
Sbjct: 74 LPEATYWRDGWKKAADAQLEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALA 133
Query: 326 HKEVLQALEKEVILTPHPKEFLSLLKLVGINISMLELLDNKLEIARDFSQKYPKVVLLLK 385
K E VILTPHP EF + G+ ++ EL + E A++++ + + V++LK
Sbjct: 134 -KRTYPKREGPVILTPHPGEFF---RXTGVPVN--ELQKKRAEYAKEWAAQL-QTVIVLK 186
Query: 386 GANTLIAH-QGQVFINILGSVALAKAGSGDVLAGLILSLLSQNYTPLDAAINASSAH 441
G T+IA G ++N G+ ALAK G+GD L G IL L + P A +NA H
Sbjct: 187 GNQTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGXILGXLCCHEDPKHAVLNAVYLH 243
>pdb|1JZT|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ynu0_yeast
pdb|1JZT|B Chain B, Crystal Structure Of Yeast Hypothetical Protein Ynu0_yeast
Length = 246
Score = 38.1 bits (87), Expect = 0.002
Identities = 43/188 (22%), Positives = 81/188 (42%), Gaps = 21/188 (11%)
Query: 26 LMENAAMALERAVLQNASL--------GAKVIILCGSGDNGGDGYALAR--RLVGRFKTL 75
L E A ++ +AV + L G V ++ G G+NGGDG AR +L G +
Sbjct: 31 LXELAGFSVAQAVCRQFPLRGKTETEKGKHVFVIAGPGNNGGDGLVCARHLKLFGYNPVV 90
Query: 76 VFEMKLAKSPMCQLQQERAKKAGVVIKAYEENALNQNLECD---VLIDCVIGSHFKGKL- 131
+ + ++ + + V + + +E + L+ + ++D + G FK
Sbjct: 91 FYPKRSERTEFYKQLVHQLNFFKVPVLSQDEGNWLEYLKPEKTLCIVDAIFGFSFKPPXR 150
Query: 132 EPFLNF-ESLSQKARF--KIACDIPSGID-SKGRVDKGAFKADLTISMGAIKSC---LLS 184
EPF E L + ++ D+P+G D KG + + + + +S+ K C +
Sbjct: 151 EPFKGIVEELCKVQNIIPIVSVDVPTGWDVDKGPISQPSINPAVLVSLTVPKPCSSHIRE 210
Query: 185 DRAKDYVG 192
++ YVG
Sbjct: 211 NQTTHYVG 218
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 28.9 bits (63), Expect = 1.3
Identities = 22/80 (27%), Positives = 40/80 (49%), Gaps = 2/80 (2%)
Query: 367 LEIARDFSQKYPKVVLLLKGANTLIAHQGQVFINILGSVALAKA-GSGDVLAGLILSLLS 425
+ +A+ +QK V+ + G +IA V+ G L K G+G +L ++ + +
Sbjct: 163 IRLAQQAAQKL-NTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGSLLTSVVGAFCA 221
Query: 426 QNYTPLDAAINASSAHALAS 445
PL AAI A S++ +A+
Sbjct: 222 VEENPLFAAIAAISSYGVAA 241
>pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1JYS|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Length = 242
Score = 28.9 bits (63), Expect = 1.3
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 405 VALAKAGSGDVLAGLILSLLSQNYTPLDAAINASSAHALA 444
VAL K+G G V A L +LL ++ P D IN SA LA
Sbjct: 53 VALLKSGIGKVAAALGATLLLEHCKP-DVIINTGSAGGLA 91
>pdb|1PVD|A Chain A, Pyruvate Decarboxylase (Pdc) (E.C.4.1.1.1)
pdb|1PVD|B Chain B, Pyruvate Decarboxylase (Pdc) (E.C.4.1.1.1)
Length = 537
Score = 28.9 bits (63), Expect = 1.3
Identities = 22/63 (34%), Positives = 32/63 (49%), Gaps = 5/63 (7%)
Query: 155 GIDSKGRVDKGAFKADLTISMGAIKSCLLSDRAKDYVGELKVGHLGVFNQIYEIPTDTFL 214
G SK V + ADL +S+GA LLSD+ K+ V E H+ + N + F+
Sbjct: 256 GTLSKPEVKEAVESADLILSVGA----LLSDKTKNIV-EFHSDHMKIRNATFPGVQMKFV 310
Query: 215 LEK 217
L+K
Sbjct: 311 LQK 313
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 28.5 bits (62), Expect = 1.7
Identities = 22/80 (27%), Positives = 40/80 (49%), Gaps = 2/80 (2%)
Query: 367 LEIARDFSQKYPKVVLLLKGANTLIAHQGQVFINILGSVALAKA-GSGDVLAGLILSLLS 425
+ +A+ +QK V+ + G +IA V+ G L K G+G +L ++ + +
Sbjct: 151 IRLAQQAAQKL-NTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGXLLTSVVGAFCA 209
Query: 426 QNYTPLDAAINASSAHALAS 445
PL AAI A S++ +A+
Sbjct: 210 VEENPLFAAIAAISSYGVAA 229
>pdb|1FIY| Three-Dimensional Structure Of Phosphoenolpyruvate Carboxylase
From Escherichia Coli At 2.8 A Resolution
pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
Length = 883
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 327 KEVLQALEKEVILTPHPKEFLS---LLKLVGINISMLELLDNK 366
K+ +++L E++LT HP E + K+V +N + L+ LDNK
Sbjct: 123 KKAVESLSLELVLTAHPTEITRRTLIHKMVEVN-ACLKQLDNK 164
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 272
Score = 27.7 bits (60), Expect = 2.9
Identities = 22/80 (27%), Positives = 40/80 (49%), Gaps = 2/80 (2%)
Query: 367 LEIARDFSQKYPKVVLLLKGANTLIAHQGQVFINILGSVALAKA-GSGDVLAGLILSLLS 425
+ +A+ +QK V+ + G +IA V+ G L K G+G +L ++ + +
Sbjct: 151 IRLAQQAAQKL-NTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCA 209
Query: 426 QNYTPLDAAINASSAHALAS 445
PL AAI A S++ +A+
Sbjct: 210 VEENPLFAAIAAISSYGVAA 229
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,528,329
Number of Sequences: 13198
Number of extensions: 106593
Number of successful extensions: 280
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 9
length of query: 466
length of database: 2,899,336
effective HSP length: 92
effective length of query: 374
effective length of database: 1,685,120
effective search space: 630234880
effective search space used: 630234880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)