BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645977|ref|NP_208157.1| response regulator
[Helicobacter pylori 26695]
(213 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprP... 100 2e-22
pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver ... 75 4e-15
pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo... 72 4e-14
pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resi... 69 4e-13
pdb|1F51|F Chain F, A Transient Interaction Between Two Pho... 67 2e-12
pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Resp... 62 4e-11
pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylat... 62 5e-11
pdb|1NTR| Solution Structure Of The N-Terminal Receiver D... 62 5e-11
pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp... 61 1e-10
pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C) 60 2e-10
pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF| ... 60 2e-10
pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal... 60 2e-10
pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylat... 59 3e-10
pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted,... 58 9e-10
pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures) 58 9e-10
pdb|3CHY| CheY >gi|13096520|pdb|1FFG|A Chain A, Chey-Bind... 58 9e-10
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotax... 58 9e-10
pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyper... 57 1e-09
pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t >gi... 57 2e-09
pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant... 57 2e-09
pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia C... 57 2e-09
pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t >gi... 57 2e-09
pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Me... 56 4e-09
pdb|5CHY| Structure Of Chemotaxis Protein Chey 56 4e-09
pdb|1E6K|A Chain A, Two-Component Signal Transduction Syste... 56 4e-09
pdb|1TMY| Chey From Thermotoga Maritima (Apo-I) >gi|27811... 56 4e-09
pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile... 55 5e-09
pdb|1YMV| Signal Transduction Protein Chey Mutant With Ph... 55 6e-09
pdb|1EHC| Structure Of Signal Transduction Protein Chey 55 6e-09
pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Mo... 55 6e-09
pdb|1E6M|A Chain A, Two-Component Signal Transduction Syste... 55 8e-09
pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound R... 55 8e-09
pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13... 55 8e-09
pdb|1E6L|A Chain A, Two-Component Signal Transduction Syste... 55 8e-09
pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domai... 55 8e-09
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey >g... 54 2e-08
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Co... 41 9e-05
pdb|1GXP|A Chain A, Phob Effector Domain In Complex With Ph... 41 1e-04
pdb|1QQI|A Chain A, Solution Structure Of The Dna-Binding A... 41 1e-04
pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RE... 40 2e-04
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain >gi... 39 6e-04
pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial P... 37 0.001
pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound F... 37 0.001
pdb|1A2O|A Chain A, Structural Basis For Methylesterase Che... 36 0.004
pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From The... 30 0.16
pdb|2CRK|A Chain A, Muscle Creatine Kinase 28 1.0
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 28 1.0
pdb|1FHE| Glutathione Transferase (Fh47) From Fasciola He... 26 3.0
pdb|3RAB|A Chain A, Gppnhp-Bound Rab3a At 2.0 A Resolution 26 4.0
pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrat... 26 4.0
pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvat... 25 6.8
pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specif... 25 6.8
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
Thermotoga Maritima
Length = 225
Score = 100 bits (248), Expect = 2e-22
Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 14/218 (6%)
Query: 4 KIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
++ ++ED+ L++ + E L+ + V ++G+E E F++++LD+ +P + E
Sbjct: 4 RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPFDVVILDIXLPVHDGWE 63
Query: 64 LFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFFNDDP 123
+ K + ++TPV+ +TAL D N GA DYL KPFDL EL AR++
Sbjct: 64 ILKSXRESG-VNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRRKS 122
Query: 124 IEIMPNIFYHQNCL------SVRGKKEI-LPPKTAQLLEYFLEHKGQIISSQALENNLW- 175
+ L + RG KEI L K Q+LEY + +K ++++ + L+ +LW
Sbjct: 123 ESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVXNKNRVVTKEELQEHLWS 182
Query: 176 -EQAIDDSTLRTYIKVLRKLLG----KNCIETHKGVGY 208
+ + LR++IK LRK + K I T +G+GY
Sbjct: 183 FDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGY 220
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 75.5 bits (184), Expect = 4e-15
Identities = 38/116 (32%), Positives = 71/116 (60%), Gaps = 1/116 (0%)
Query: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60
M KKI +++D+ + ++ LE GY+V A +G+EA ++ E+ +L++LDV +P+++
Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 61
Query: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIK 116
+E+ K+++ L+ P++ +TA + LGA DY+ KPF E+ AR+K
Sbjct: 62 GIEVCKQLRQQKLM-FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVK 116
>pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, 20
Structures
pdb|2FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
pdb|1NAT| Crystal Structure Of Spoof From Bacillus Subtilis
Length = 124
Score = 72.4 bits (176), Expect = 4e-14
Identities = 39/118 (33%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60
M +KI +++D Y + + E GY+ F A NG +A + ++ ER +L+LLD+++P M+
Sbjct: 2 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 61
Query: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRF 118
+E+ KR+K + VI +TA + ++ + LGA + KPFD+DE+ +K++
Sbjct: 62 GIEILKRMK-VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKY 118
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
Length = 124
Score = 68.9 bits (167), Expect = 4e-13
Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60
M +KI +++D + + E GY+ F A NG +A + ++ ER +L+LLD+++P M+
Sbjct: 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD 61
Query: 61 SLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRF 118
+E+ KR+K + VI +TA + ++ + LGA + KPFD+DE+ +K++
Sbjct: 62 GIEILKRMK-VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKY 118
>pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 67.0 bits (162), Expect = 2e-12
Identities = 37/116 (31%), Positives = 69/116 (58%), Gaps = 1/116 (0%)
Query: 3 KKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSL 62
+KI +++D + + E GY+ F A NG +A + ++ ER +L+LLD+++P M+ +
Sbjct: 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGI 61
Query: 63 ELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRF 118
E+ KR+K + VI +TA + ++ + LGA + KPFD+DE+ +K++
Sbjct: 62 EILKRMK-VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKY 116
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 62.4 bits (150), Expect = 4e-11
Identities = 35/117 (29%), Positives = 64/117 (53%), Gaps = 7/117 (5%)
Query: 3 KKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSL 62
+++ L D+Y+ S+ E + A+NG++ + L +R ++LLLD+ +P ++ L
Sbjct: 12 RELVSLLDEYISSQPDMEVIG-------TAYNGQDCLQMLEEKRPDILLLDIIMPHLDGL 64
Query: 63 ELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
+ +RI+ F VI +TA K A LGAS ++ KPFD++ L I++ +
Sbjct: 65 AVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVY 121
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 62.0 bits (149), Expect = 5e-11
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 5 IFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLEL 64
+++++DD + ++ L G NG E L+ + ++LL D+++P M+ L L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 FKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117
K+IK + PVI +TA D +A+ GA DYL KPFD+DE A ++R
Sbjct: 66 LKQIKQRHPM-LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117
>pdb|1NTR| Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 62.0 bits (149), Expect = 5e-11
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 5 IFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLEL 64
+++++DD + ++ L G NG E L+ + ++LL D+++P M+ L L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 FKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117
K+IK + PVI +TA D +A+ GA DYL KPFD+DE A ++R
Sbjct: 66 LKQIKQRHPM-LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 60.8 bits (146), Expect = 1e-10
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 67
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA D +K GAS Y+ KPF LE ++ + F
Sbjct: 68 LLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKLNKIF 124
>pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C)
Length = 128
Score = 60.1 bits (144), Expect = 2e-10
Identities = 39/117 (33%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L F ++ D +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIICDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|2CHE| Chey Complexed With Mg2+
pdb|2CHF| Chey
Length = 128
Score = 59.7 bits (143), Expect = 2e-10
Identities = 39/117 (33%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L F ++ D +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 59.7 bits (143), Expect = 2e-10
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 3 KKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSL 62
+++ L D+Y+ S+ E + A+NG++ + L +R ++LLL + +P ++ L
Sbjct: 12 RELVSLLDEYISSQPDMEVIG-------TAYNGQDCLQMLEEKRPDILLLXIIMPHLDGL 64
Query: 63 ELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
+ +RI+ F VI +TA K A LGAS ++ KPFD++ L I++ +
Sbjct: 65 AVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVY 121
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 59.3 bits (142), Expect = 3e-10
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 5 IFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLEL 64
+++++DD + ++ L G NG E L+ + ++LL +++P M+ L L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSXIRMPGMDGLAL 65
Query: 65 FKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117
K+IK + PVI +TA D +A+ GA DYL KPFD+DE A ++R
Sbjct: 66 LKQIKQRHPM-LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER 117
>pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted, And Ala 2 Replaced
By Ser (Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 57.8 bits (138), Expect = 9e-10
Identities = 38/117 (32%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 67
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 68 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 124
>pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures)
Length = 128
Score = 57.8 bits (138), Expect = 9e-10
Identities = 38/117 (32%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|3CHY| CheY
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1CHN| Chey Complexed With Mg2+ In The Active Site
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
Length = 128
Score = 57.8 bits (138), Expect = 9e-10
Identities = 38/117 (32%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
Length = 129
Score = 57.8 bits (138), Expect = 9e-10
Identities = 38/117 (32%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 67
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 68 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 124
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 57.4 bits (137), Expect = 1e-09
Identities = 38/117 (32%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 57.0 bits (136), Expect = 2e-09
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 4 KIFLLEDDYLLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSL 62
K +++D+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ L
Sbjct: 3 KFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 62
Query: 63 ELFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
EL K I+ D +S PV+ TA + A GAS Y+ KPF LE ++ + F
Sbjct: 63 ELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 120
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 57.0 bits (136), Expect = 2e-09
Identities = 38/117 (32%), Positives = 60/117 (50%), Gaps = 3/117 (2%)
Query: 6 FLLEDDYLLSES-VKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 9 FLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 68
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 69 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 125
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
Length = 127
Score = 57.0 bits (136), Expect = 2e-09
Identities = 36/117 (30%), Positives = 60/117 (50%), Gaps = 1/117 (0%)
Query: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMN 60
M ++I ++ED+ + E V LE G++ A + A +L+ +L+LLD +P +
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 SLELFKRIKNDFLI-STPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIK 116
++ K +K + + PV+ +TA + GA DY+ KPF EL ARIK
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 57.0 bits (136), Expect = 2e-09
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 4 KIFLLEDDYLLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSL 62
K +++D+ + + L+ LG+ V A +G +A +L + ++ D +P M+ L
Sbjct: 3 KFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 62
Query: 63 ELFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
EL K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 63 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 120
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 55.8 bits (133), Expect = 4e-09
Identities = 37/117 (31%), Positives = 60/117 (50%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 55.8 bits (133), Expect = 4e-09
Identities = 37/117 (31%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS ++ KPF LE ++ + F
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKIF 123
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 55.8 bits (133), Expect = 4e-09
Identities = 36/118 (30%), Positives = 59/118 (49%), Gaps = 2/118 (1%)
Query: 4 KIFLLEDDYLLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSL 62
K ++ D + V+ L+ LG+ V A +G +A +L + ++ D +P M+ L
Sbjct: 8 KFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 67
Query: 63 ELFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
EL K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 68 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 125
>pdb|1TMY| Chey From Thermotoga Maritima (Apo-I)
pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|2TMY| Chey From Thermotoga Maritima (Apo-Ii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (Mg-Iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (Mg-Iv)
Length = 120
Score = 55.8 bits (133), Expect = 4e-09
Identities = 31/107 (28%), Positives = 58/107 (53%), Gaps = 2/107 (1%)
Query: 1 MQKKIFLLEDDYLLSESVKEFLEHLGYEVFC-AFNGKEAYERLSVERFNLLLLDVQVPEM 59
M K++ +++D + +K+ + GYEV A NG+EA E+ + +++ +D+ +PEM
Sbjct: 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEM 60
Query: 60 NSLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPF 106
N ++ K I + +I +A+ A + A GA D++ KPF
Sbjct: 61 NGIDAIKEIMK-IDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPF 106
>pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile (T87i)
pdb|1VLZ|B Chain B, Chey Mutant With Thr 87 Replaced By Ile (T87i)
Length = 128
Score = 55.5 bits (132), Expect = 5e-09
Identities = 37/117 (31%), Positives = 60/117 (50%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ + A + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1YMV| Signal Transduction Protein Chey Mutant With Phe 14 Replaced By
Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly
Length = 129
Score = 55.1 bits (131), Expect = 6e-09
Identities = 36/118 (30%), Positives = 59/118 (49%), Gaps = 2/118 (1%)
Query: 4 KIFLLEDDYLLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSL 62
K +++D V+ L+ LG+ V A +G +A +L + ++ D +P M+ L
Sbjct: 7 KFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 66
Query: 63 ELFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
EL K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 124
>pdb|1EHC| Structure Of Signal Transduction Protein Chey
Length = 128
Score = 55.1 bits (131), Expect = 6e-09
Identities = 37/117 (31%), Positives = 60/117 (50%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ D + + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 7 FLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 55.1 bits (131), Expect = 6e-09
Identities = 37/117 (31%), Positives = 60/117 (50%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 54.7 bits (130), Expect = 8e-09
Identities = 37/117 (31%), Positives = 60/117 (50%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISAWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 54.7 bits (130), Expect = 8e-09
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 5 IFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLEL 64
+FL++DD L +++++ LE G+ V + EA LS + +++ D+++P M+ L L
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLAL 65
Query: 65 FKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117
F++I P+I +T D A GA D++ KPF D L +R
Sbjct: 66 FRKIL-ALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARR 117
>pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13 Replaced By Asn,
Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, Met 17
Replaced By Gly, Arg 18 Replaced By Lys, Arg 19 Replaced
By Ser, Ile 20 Replaced By Thr, Glu 35 Replaced By Asp
(D12g, D13n,F14g,S15g,M17g,R18k,R19s,I20t,E35d)
(Synchrotron X-Ray Diffraction)
Length = 128
Score = 54.7 bits (130), Expect = 8e-09
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 17 SVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLELFKRIKNDFLIS 75
+V+ L+ LG+ V A +G +A +L + ++ D +P M+ LEL K I+ D +S
Sbjct: 19 TVRNLLKELGFNNVEDAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMS 78
Query: 76 T-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 79 ALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 54.7 bits (130), Expect = 8e-09
Identities = 37/117 (31%), Positives = 60/117 (50%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ D + + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 6 FLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 65
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ +TA + A GAS Y+ KPF LE ++ + F
Sbjct: 66 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 122
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 54.7 bits (130), Expect = 8e-09
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 5 IFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLEL 64
+FL++DD L +++++ LE G+ V + EA LS + +++ D+++P M+ L L
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLAL 65
Query: 65 FKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117
F++I P+I +T D A GA D++ KPF D L +R
Sbjct: 66 FRKIL-ALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARR 117
>pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 53.5 bits (127), Expect = 2e-08
Identities = 36/117 (30%), Positives = 60/117 (50%), Gaps = 3/117 (2%)
Query: 6 FLLEDDY-LLSESVKEFLEHLGYE-VFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE 63
FL+ DD+ + V+ L+ LG+ V A +G +A +L + ++ D +P M+ LE
Sbjct: 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 66
Query: 64 LFKRIKNDFLIST-PVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFF 119
L K I+ D +S PV+ + A + A GAS ++ KPF LE ++ + F
Sbjct: 67 LLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKIF 123
>pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 41.2 bits (95), Expect = 9e-05
Identities = 28/104 (26%), Positives = 55/104 (51%), Gaps = 3/104 (2%)
Query: 5 IFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVE-RFNLLLLDVQVPEMNSLE 63
+ +++D+ + +S+ L G+ V EA+ + + R +L+ D+++P+M+ +E
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKM-HQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVE 64
Query: 64 LFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFD 107
L + + D I+ P I IT D A GA D+++KPF+
Sbjct: 65 LLRNL-GDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE 107
>pdb|1GXP|A Chain A, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXP|B Chain B, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXP|E Chain E, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXP|F Chain F, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXQ|A Chain A, Crystal Structure Of The Phob Effector Domain
Length = 106
Score = 40.8 bits (94), Expect = 1e-04
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 148 PKTAQLLEYFLEHKGQIISSQALENNLW--EQAIDDSTLRTYIKVLRKLL----GKNCIE 201
P +LL +F+ H ++ S + L N++W ++D T+ +I+ LRK L ++
Sbjct: 34 PTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQ 93
Query: 202 THKGVGYRFN 211
T +G GYRF+
Sbjct: 94 TVRGTGYRFS 103
>pdb|1QQI|A Chain A, Solution Structure Of The Dna-Binding And Transactivation
Domain Of Phob From Escherichia Coli
Length = 104
Score = 40.8 bits (94), Expect = 1e-04
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 148 PKTAQLLEYFLEHKGQIISSQALENNLW--EQAIDDSTLRTYIKVLRKLL----GKNCIE 201
P +LL +F+ H ++ S + L N++W ++D T+ +I+ LRK L ++
Sbjct: 32 PTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQ 91
Query: 202 THKGVGYRFN 211
T +G GYRF+
Sbjct: 92 TVRGTGYRFS 101
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL| The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM Narl
Length = 215
Score = 40.0 bits (92), Expect = 2e-04
Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 5 IFLLEDDYLLSESVKEFLEHLG--YEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSL 62
I L++D +L VK+ + V A NG++ E +L+LLD+ +P MN L
Sbjct: 8 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGL 67
Query: 63 ELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDEL-----EARIKR 117
E +++ L V+F + + + A GA YL K + ++L +A
Sbjct: 68 ETLDKLREKSLSGRIVVFSVSNHEEDVV-TALKRGADGYLLKDMEPEDLLKALHQAAAGE 126
Query: 118 FFNDDPIEIMPNIFYHQNCLSVRGKKEILPPKTAQLLEYFLEHKGQIISSQALENNLWEQ 177
+ + + N + L P+ +L+ + +Q L N + +
Sbjct: 127 MVLSEALTPVLAASLRANRATTERDVNQLTPRERDILK---------LIAQGLPNKMIAR 177
Query: 178 AID--DSTLRTYIK-VLRKLLGKNCIE 201
+D +ST++ ++K +L+K+ K+ +E
Sbjct: 178 RLDITESTVKVHVKHMLKKMKLKSRVE 204
>pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 38.5 bits (88), Expect = 6e-04
Identities = 27/104 (25%), Positives = 54/104 (50%), Gaps = 3/104 (2%)
Query: 5 IFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVE-RFNLLLLDVQVPEMNSLE 63
+ +++D+ + +S+ L G+ V EA+ + + R +L+ +++P+M+ +E
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKM-HQSAEAFLAFAPDVRNGVLVTXLRMPDMSGVE 64
Query: 64 LFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFD 107
L + + D I+ P I IT D A GA D+++KPF+
Sbjct: 65 LLRNL-GDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE 107
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 37.4 bits (85), Expect = 0.001
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 3 KKIFLLEDDYLLSESVKEFLEH--LGYEVFCAFNGKEAYERLSVE-------RFNLLLLD 53
K I L+ED S V+E L+ + +E+ +G A L + R NL+LLD
Sbjct: 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFLQQQGEYENSPRPNLILLD 68
Query: 54 VQVPEMNSLELFKRIK-NDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDEL 111
+ +P+ + E+ IK N L PV+ +T + + ++ L + YL K +L +L
Sbjct: 69 LNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDL 127
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 37.4 bits (85), Expect = 0.001
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 3 KKIFLLEDDYLLSESVKEFLEH--LGYEVFCAFNGKEAYERLSVE-------RFNLLLLD 53
K I L+ED S V+E L+ + +E+ +G A L + R NL+LLD
Sbjct: 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLD 68
Query: 54 VQVPEMNSLELFKRIK-NDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDEL 111
+ +P+ + E+ IK N L PV+ +T + + ++ L + YL K +L +L
Sbjct: 69 LNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDL 127
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 35.8 bits (81), Expect = 0.004
Identities = 25/106 (23%), Positives = 52/106 (48%), Gaps = 6/106 (5%)
Query: 4 KIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFN--LLLLDVQVPEMNS 61
++ ++D L+ + + E + A R +++FN +L LDV++P M+
Sbjct: 5 RVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDG 64
Query: 62 LELFKRIKNDFLISTPVIFITAL--QDNATLKNAFNLGASDYLKKP 105
L+ +++ L PV+ +++L + + A LGA D++ KP
Sbjct: 65 LDFLEKLMR--LRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|B Chain B, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|C Chain C, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|D Chain D, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
Length = 220
Score = 30.4 bits (67), Expect = 0.16
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 18 VKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLE-LFKRIKND----F 72
+K +LE + E+ Y ++VER + ++D ++P+ + + + ++I+ D +
Sbjct: 53 LKRYLEEIKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAY 112
Query: 73 LISTPVIFIT-ALQDNATLKNAFNLGASDYL 102
+ + PV IT L+DN + + A YL
Sbjct: 113 MATLPVRAITKTLRDNG-IPATISYSAGTYL 142
>pdb|2CRK|A Chain A, Muscle Creatine Kinase
Length = 381
Score = 27.7 bits (60), Expect = 1.0
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 8 LEDDYLLSESVKEFLEHLGYEV--FCAFNGKEAYERLSVERFNLLLLDVQ-----VPEMN 60
L+ Y+LS V+ GY + C+ + A E+LSVE N L + + + M
Sbjct: 121 LDPHYVLSSRVRTGRSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMT 180
Query: 61 SLELFKRIKNDFLISTPV 78
E + I + FL PV
Sbjct: 181 EQEQQQLIDDHFLFDKPV 198
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 27.7 bits (60), Expect = 1.0
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 11/71 (15%)
Query: 9 EDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEMNSLELFKRI 68
E D L +S E E+L EVF F + RLS E + ++L+ F
Sbjct: 590 ESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLE-----------FAEG 638
Query: 69 KNDFLISTPVI 79
+ D L+ST VI
Sbjct: 639 RYDILVSTTVI 649
>pdb|1FHE| Glutathione Transferase (Fh47) From Fasciola Hepatica
Length = 217
Score = 26.2 bits (56), Expect = 3.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 14 LSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNL 49
L++ V+ FLE+LG E G++ E+ E+FN+
Sbjct: 12 LAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNM 47
>pdb|3RAB|A Chain A, Gppnhp-Bound Rab3a At 2.0 A Resolution
Length = 169
Score = 25.8 bits (55), Expect = 4.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 8 LEDDYLLS-ESVKEFLEHLGYEVFCA-----FNGKEAYERL 42
+ED+ ++S E ++ +HLG+E F A N K+ +ERL
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1VID| Catechol O-Methyltransferase
Length = 221
Score = 25.8 bits (55), Expect = 4.0
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 74 ISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFFNDDPIEIMPNIFYH 133
I+ ++ LQD T+ N + LKK +D+D L+ + D +P+
Sbjct: 98 ITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD---RYLPDTLLL 154
Query: 134 QNCLSVRG-----KKEILPPKTAQLLEY 156
+ C +R ++ P T L Y
Sbjct: 155 EKCGLLRKGTVLLADNVIVPGTPDFLAY 182
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
Length = 295
Score = 25.0 bits (53), Expect = 6.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 95 NLGASDYL--KKPFDLDELEARIKRFFNDDPIEIMPNIFY 132
N GA L K D ++EA +K + N P+ I+P +Y
Sbjct: 181 NAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYY 220
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 25.0 bits (53), Expect = 6.8
Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 6/40 (15%)
Query: 9 EDDYLLS-ESVKEFLEHLGYEVFCA-----FNGKEAYERL 42
ED+ ++S E ++ +HLG+E F A N K+ +ERL
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.141 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,185,263
Number of Sequences: 13198
Number of extensions: 45124
Number of successful extensions: 178
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 55
length of query: 213
length of database: 2,899,336
effective HSP length: 84
effective length of query: 129
effective length of database: 1,790,704
effective search space: 231000816
effective search space used: 231000816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)