BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645982|ref|NP_208163.1| rod shape-determining
protein (mreC) [Helicobacter pylori 26695]
(248 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1M47|A Chain A, Crystal Structure Of Human Interleukin-... 26 4.9
pdb|1IRL| Mol_id: 1; Molecule: Interleukin-2; Chain: Null... 26 4.9
pdb|1M4A|A Chain A, Crystal Structure Of Human Interleukin-... 26 4.9
pdb|1M4B|A Chain A, Crystal Structure Of Human Interleukin-... 26 4.9
pdb|3INK|C Chain C, Interleukin 2 Mutant With Cys 125 Repla... 26 4.9
pdb|1APA| X-Ray Structure Of A Pokeweed Antiviral Protein... 25 6.4
pdb|1L7I|H Chain H, Crystal Structure Of The Anti-Erbb2 Fab2c4 25 8.4
pdb|2UCZ| Ubiquitin Conjugating Enzyme (Ubc7) From Saccha... 25 8.4
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 25 8.4
pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase >gi|2221... 25 8.4
>pdb|1M47|A Chain A, Crystal Structure Of Human Interleukin-2
pdb|1M48|A Chain A, Crystal Structure Of Human Il-2 Complexed With
(R)-N-[2-[1-
(Aminoiminomethyl)-3-Piperidinyl]-1-Oxoethyl]-4-
(Phenylethynyl)-L-Phenylalanine Methyl Ester
pdb|1M48|B Chain B, Crystal Structure Of Human Il-2 Complexed With
(R)-N-[2-[1-
(Aminoiminomethyl)-3-Piperidinyl]-1-Oxoethyl]-4-
(Phenylethynyl)-L-Phenylalanine Methyl Ester
pdb|1M49|A Chain A, Crystal Structure Of Human Interleukin-2 Complexed With
Sp- 1985
pdb|1M49|B Chain B, Crystal Structure Of Human Interleukin-2 Complexed With
Sp- 1985
pdb|1M4C|A Chain A, Crystal Structure Of Human Interleukin-2
pdb|1M4C|B Chain B, Crystal Structure Of Human Interleukin-2
Length = 133
Score = 25.8 bits (55), Expect = 4.9
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 62 QKERLILEALKLENADLKERLNSIYPLENPKMT-------YTPTFMTSFISLE--DTHSV 112
+K +L LE L L DL+ LN I +NPK+T Y P T L+ +
Sbjct: 8 KKTQLQLEHLLL---DLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELK 64
Query: 113 SLNPIVNLEENKIYGLVSHN--QAIGIAVLE-KGRLNGFL 149
L ++NL ++K + L + I + VLE KG F+
Sbjct: 65 PLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFM 104
>pdb|1IRL| Mol_id: 1; Molecule: Interleukin-2; Chain: Null; Engineered: Yes;
Mutation: F42a
Length = 133
Score = 25.8 bits (55), Expect = 4.9
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 62 QKERLILEALKLENADLKERLNSIYPLENPKMT-------YTPTFMTSFISLE--DTHSV 112
+K +L LE L L DL+ LN I +NPK+T Y P T L+ +
Sbjct: 8 KKTQLQLEHLLL---DLQMILNGINNYKNPKLTRMLTAKFYMPKKATELKHLQCLEEELK 64
Query: 113 SLNPIVNLEENKIYGLVSHN--QAIGIAVLE-KGRLNGFL 149
L ++NL ++K + L + I + VLE KG F+
Sbjct: 65 PLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFM 104
>pdb|1M4A|A Chain A, Crystal Structure Of Human Interleukin-2 Y31c Covalently
Modified At C31 With (1h-Indol-3-Yl)-(2-Mercapto-
Ethoxyimino)-Acetic Acid
Length = 133
Score = 25.8 bits (55), Expect = 4.9
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 62 QKERLILEALKLENADLKERLNSIYPLENPKMT-------YTPTFMTSFISLE--DTHSV 112
+K +L LE L L DL+ LN I +NPK+T Y P T L+ +
Sbjct: 8 KKTQLQLEHLLL---DLQMILNGINNCKNPKLTRMLTFKFYMPKKATELKHLQCLEEELK 64
Query: 113 SLNPIVNLEENKIYGLVSHN--QAIGIAVLE-KGRLNGFL 149
L ++NL ++K + L + I + VLE KG F+
Sbjct: 65 PLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFM 104
>pdb|1M4B|A Chain A, Crystal Structure Of Human Interleukin-2 K43c Covalently
Modified At C43 With 2-[2-(2-Cyclohexyl-2-Guanidino-
Acetylamino)-Acetylamino]-N-(3-Mercapto-Propyl)-
Propionamide
Length = 133
Score = 25.8 bits (55), Expect = 4.9
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 62 QKERLILEALKLENADLKERLNSIYPLENPKMT-------YTPTFMTSFISLE--DTHSV 112
+K +L LE L L DL+ LN I +NPK+T Y P T L+ +
Sbjct: 8 KKTQLQLEHLLL---DLQMILNGINNYKNPKLTRMLTFCFYMPKKATELKHLQCLEEELK 64
Query: 113 SLNPIVNLEENKIYGLVSHN--QAIGIAVLE-KGRLNGFL 149
L ++NL ++K + L + I + VLE KG F+
Sbjct: 65 PLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFM 104
>pdb|3INK|C Chain C, Interleukin 2 Mutant With Cys 125 Replaced By Ala (C125a)
pdb|3INK|D Chain D, Interleukin 2 Mutant With Cys 125 Replaced By Ala (C125a)
Length = 133
Score = 25.8 bits (55), Expect = 4.9
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 62 QKERLILEALKLENADLKERLNSIYPLENPKMT-------YTPTFMTSFISLE--DTHSV 112
+K +L LE L L DL+ LN I +NPK+T Y P T L+ +
Sbjct: 8 KKTQLQLEHLLL---DLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELK 64
Query: 113 SLNPIVNLEENKIYGLVSHN--QAIGIAVLE-KGRLNGFL 149
L ++NL ++K + L + I + VLE KG F+
Sbjct: 65 PLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFM 104
>pdb|1APA| X-Ray Structure Of A Pokeweed Antiviral Protein, Coded By A New
Genomic Clone, At 0.23 Nm Resolution. A Model Structure
Provides A Suitable Electrostatic Field For Substrate
Binding
Length = 266
Score = 25.4 bits (54), Expect = 6.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 185 PSAEINIGDQVLTSGLDGIFGAGVF 209
P +++ +G Q+L SG+ I+G F
Sbjct: 138 PRSQVQLGIQILNSGIGKIYGVDSF 162
>pdb|1L7I|H Chain H, Crystal Structure Of The Anti-Erbb2 Fab2c4
Length = 222
Score = 25.0 bits (53), Expect = 8.4
Identities = 14/37 (37%), Positives = 19/37 (50%)
Query: 22 FKGSSSYISDRIKNALMNAKNSLLDNVQAYFFQAQNI 58
FKG + DR KN L NSL A ++ A+N+
Sbjct: 64 FKGRFTLSVDRSKNTLYLQMNSLRAEDTAVYYCARNL 100
>pdb|2UCZ| Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae
Length = 165
Score = 25.0 bits (53), Expect = 8.4
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 86 YPLENPKMTYTPTFM 100
YPL PK+T+TP+ +
Sbjct: 64 YPLSPPKLTFTPSIL 78
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 25.0 bits (53), Expect = 8.4
Identities = 23/93 (24%), Positives = 44/93 (46%), Gaps = 17/93 (18%)
Query: 10 LLGIFLIFYFLDFKGSSSYISDRIKNALMNAKNSLLDNVQAYFFQ---AQNIKEFQ---- 62
L+G+ L+F ++ K S Y+ D + +S LD+ A F+ +N K Q
Sbjct: 227 LVGLALLFALMEIKPSPFYVLDEV--------DSPLDDYNAERFKRLLKENSKHTQFIVI 278
Query: 63 -KERLILEALK-LENADLKERLNSIYPLENPKM 93
++++EA L + +++I P+E K+
Sbjct: 279 THNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 25.0 bits (53), Expect = 8.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 80 ERLNSIYPLENPKMTYTPTFMTSFISLEDTHSVSL 114
ER N ++PLE P++ Y M ++ T + L
Sbjct: 772 ERWNMLHPLETPRVPYIAQVMNDAPAVASTDYMKL 806
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.140 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,322,332
Number of Sequences: 13198
Number of extensions: 52482
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 10
length of query: 248
length of database: 2,899,336
effective HSP length: 86
effective length of query: 162
effective length of database: 1,764,308
effective search space: 285817896
effective search space used: 285817896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)