BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644768|ref|NP_206938.1| conserved hypothetical
iron-sulfur protein [Helicobacter pylori 26695]
(481 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CLF| Clostridium Pasteurianum Ferredoxin 36 0.011
pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With ... 33 0.054
pdb|1FCA| Ferredoxin 33 0.071
pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Uri... 32 0.12
pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxi... 32 0.16
pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pa... 31 0.35
pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-On... 30 0.78
pdb|1FLO|B Chain B, Flp Recombinase-Holliday Junction Compl... 29 1.0
pdb|1XER| Structure Of Ferredoxin 29 1.3
pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mu... 28 1.7
pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dism... 28 2.3
pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manga... 28 2.3
pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn... 28 2.3
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondria... 28 2.3
pdb|1A1S| Ornithine Carbamoyltransferase From Pyrococcus ... 28 2.3
pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Ami... 28 2.3
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Ami... 28 2.3
pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Ami... 28 2.3
pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition ... 28 2.3
pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 27 3.9
pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c V... 27 3.9
pdb|1H98|A Chain A, New Insights Into Thermostability Of Ba... 27 3.9
pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 27 3.9
pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodo... 27 5.1
pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin... 27 6.6
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidas... 27 6.6
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidas... 27 6.6
>pdb|1CLF| Clostridium Pasteurianum Ferredoxin
Length = 55
Score = 35.8 bits (81), Expect = 0.011
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 21/75 (28%)
Query: 308 YYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLC 367
Y A SC+ CG C + CPV + +F ++ + C C
Sbjct: 2 YKIADSCVSCGACASECPVN----------------AISQGDSIFVID-----ADTCIDC 40
Query: 368 GRCTEVCPVEIPLAE 382
G C VCPV P+ E
Sbjct: 41 GNCANVCPVGAPVQE 55
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1KFY|B Chain B, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
pdb|1KFY|N Chain N, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
Length = 243
Score = 33.5 bits (75), Expect = 0.054
Identities = 22/92 (23%), Positives = 38/92 (40%), Gaps = 20/92 (21%)
Query: 307 KYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVS-------------PQLFG 353
KY++ CI CG C CP + + GP + ++ ++
Sbjct: 141 KYHQFSGCINCGLCYAACPQF------GLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQ 194
Query: 354 LNNYGHIPNLCSLCGRCTEVCPVEIPLAELIR 385
LN+ + + C+ G C+EVCP + A I+
Sbjct: 195 LNSQNGVWS-CTFVGYCSEVCPKHVDPAAAIQ 225
>pdb|1FCA| Ferredoxin
Length = 55
Score = 33.1 bits (74), Expect = 0.071
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 25/70 (35%)
Query: 313 SCIRCGTCLNHCPVYDKI--GGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRC 370
+CI CG C CPV D I GG Y+ + C CG C
Sbjct: 7 ACISCGACEPECPV-DAISQGGSRYVID----------------------ADTCIDCGAC 43
Query: 371 TEVCPVEIPL 380
VCPV+ P+
Sbjct: 44 AGVCPVDAPV 53
>pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
pdb|1FDN| Ferredoxin
Length = 55
Score = 32.3 bits (72), Expect = 0.12
Identities = 21/68 (30%), Positives = 27/68 (38%), Gaps = 21/68 (30%)
Query: 313 SCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTE 372
+CI CG C CPV +A S G + Y + C CG C
Sbjct: 7 ACISCGACEPECPV------NAISS---------------GDDRYVIDADTCIDCGACAG 45
Query: 373 VCPVEIPL 380
VCPV+ P+
Sbjct: 46 VCPVDAPV 53
>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
Peptostreptococcus Asaccharolyticus
Length = 55
Score = 32.0 bits (71), Expect = 0.16
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 22/70 (31%)
Query: 313 SCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTE 372
SCI CG C CPV + ++ ++ + C CG C
Sbjct: 7 SCIACGACKPECPV-----------------NCIQEGSIYAID-----ADSCIDCGSCAS 44
Query: 373 VCPVEIPLAE 382
VCPV P E
Sbjct: 45 VCPVGAPNPE 54
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
Length = 574
Score = 30.8 bits (68), Expect = 0.35
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 314 CIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEV 373
C+ CG C+N C + +L+ I + F N C LCG+C
Sbjct: 147 CLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTN-------CLLCGQCIIA 199
Query: 374 CPV 376
CPV
Sbjct: 200 CPV 202
Score = 29.3 bits (64), Expect = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 295 LDNNRSNILA--DEKYYRALSCIRCGTCLNHCPV 326
L+ N I+ DEK + +C+ CG C+ CPV
Sbjct: 169 LNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPV 202
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
Length = 421
Score = 29.6 bits (65), Expect = 0.78
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 313 SCIRCGTCLNHCP 325
+CI CG CL HCP
Sbjct: 65 ACINCGQCLTHCP 77
Score = 26.6 bits (57), Expect = 6.6
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 25/65 (38%)
Query: 314 CIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGH-IPNL--CSLCGRC 370
CI C TC +CP + +FG H IP++ C CG+C
Sbjct: 35 CIGCDTCSQYCP----------------------TAAIFGEMGEPHSIPHIEACINCGQC 72
Query: 371 TEVCP 375
CP
Sbjct: 73 LTHCP 77
>pdb|1FLO|B Chain B, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|A Chain A, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|D Chain D, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|C Chain C, Flp Recombinase-Holliday Junction Complex I
Length = 422
Score = 29.3 bits (64), Expect = 1.0
Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 5/72 (6%)
Query: 8 QEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRL 67
Q+++ ITD + +QL+ D ++ K +LK SE E++ E+ + KIL+
Sbjct: 109 QKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITE----KILNSF 164
Query: 68 DEYLELFEKNAT 79
EY F K T
Sbjct: 165 -EYTSRFTKTKT 175
>pdb|1XER| Structure Of Ferredoxin
Length = 103
Score = 28.9 bits (63), Expect = 1.3
Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 22/68 (32%)
Query: 314 CIRCGTCLNHCPV-----YDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCG 368
CI G+C+N CPV YD GH P+ C C
Sbjct: 45 CIADGSCINACPVNVFQWYD-TPGHPASEKKADPVN----------------EQACIFCM 87
Query: 369 RCTEVCPV 376
C VCPV
Sbjct: 88 ACVNVCPV 95
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 28.5 bits (62), Expect = 1.7
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 175 NAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACD 234
N E + E L AI R F+ FK ++ + + G WL N+ G + AC
Sbjct: 84 NGGGEPKGELLEAIKRDF--GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACP 141
Query: 235 VHVAICGIEKLV 246
+ + G L+
Sbjct: 142 NNDPLQGTTGLI 153
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 2/59 (3%)
Query: 175 NAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTAC 233
N E + E L AI R F+ FK ++ + + G WL N+ G + AC
Sbjct: 84 NGGGEPKGELLEAIKRDF--GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAAC 140
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 2/59 (3%)
Query: 175 NAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTAC 233
N E + E L AI R F+ FK ++ + + G WL N+ G + AC
Sbjct: 84 NGGGEPKGELLEAIKRDF--GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAAC 140
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two 4-
Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two 4-
Helix Bundles
Length = 199
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 2/59 (3%)
Query: 175 NAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTAC 233
N E + E L AI R F+ FK ++ + + G WL N+ G + AC
Sbjct: 85 NGGGEPKGELLEAIKRDF--GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAAC 141
>pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 2/59 (3%)
Query: 175 NAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTAC 233
N E + E L AI R F+ FK ++ + + G WL N+ G + AC
Sbjct: 84 NGGGEPKGELLEAIKRDF--GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAAC 140
>pdb|1A1S| Ornithine Carbamoyltransferase From Pyrococcus Furiosus
Length = 314
Score = 28.1 bits (61), Expect = 2.3
Identities = 20/85 (23%), Positives = 40/85 (46%), Gaps = 13/85 (15%)
Query: 20 DMQLRENLRSAMDTLRANRK--NLLKNRYSEWENLRELGKEVKLKILSRLDE-------- 69
D+QLR + DT R + + + R + +++ +L K + +++ L +
Sbjct: 81 DLQLRRG-ETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVINGLSDFSHPCQAL 139
Query: 70 --YLELFEKNATQNGFKIHYAKDGD 92
Y+ ++EK T G K+ Y DG+
Sbjct: 140 ADYMTIWEKKGTIKGVKVVYVGDGN 164
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 2/59 (3%)
Query: 175 NAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTAC 233
N E + E L AI R F+ FK ++ + + G WL N+ G + AC
Sbjct: 85 NGGGEPKGELLEAIKRDF--GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAAC 141
>pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1MSD|A Chain A, Manganese Superoxide Dismutase (E.C.1.15.1.1)
pdb|1MSD|B Chain B, Manganese Superoxide Dismutase (E.C.1.15.1.1)
Length = 198
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 2/59 (3%)
Query: 175 NAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTAC 233
N E + E L AI R F+ FK ++ + + G WL N+ G + AC
Sbjct: 84 NGGGEPKGELLEAIKRDF--GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAAC 140
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 2/59 (3%)
Query: 175 NAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTAC 233
N E + E L AI R F+ FK ++ + + G WL N+ G + AC
Sbjct: 84 NGGGEPKGELLEAIKRDF--GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAAC 140
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 2/59 (3%)
Query: 175 NAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTAC 233
N E + E L AI R F+ FK ++ + + G WL N+ G + AC
Sbjct: 84 NGGGEPKGELLEAIKRDF--GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAAC 140
>pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20 Structures
Length = 77
Score = 27.3 bits (59), Expect = 3.9
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 353 GLNNYGHIPNLCSLCGRCTEVCPV 376
G + Y P++C CG C VCPV
Sbjct: 28 GEDQYYIDPDVCIDCGACEAVCPV 51
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 27.3 bits (59), Expect = 3.9
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 353 GLNNYGHIPNLCSLCGRCTEVCPV 376
G + Y P++C CG C VCPV
Sbjct: 28 GEDQYYIDPDVCIDCGACEAVCPV 51
>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
Ferredoxins: High Resolution Crystal Structure Of The
Seven-Iron Ferredoxin From Thermus Thermophilus
Length = 78
Score = 27.3 bits (59), Expect = 3.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 305 DEKYYRALSCIRCGTCLNHCPV 326
D+ Y CI CG C+ CPV
Sbjct: 30 DQFYIHPEECIDCGACVPACPV 51
>pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized Average
Structure
Length = 77
Score = 27.3 bits (59), Expect = 3.9
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 353 GLNNYGHIPNLCSLCGRCTEVCPV 376
G + Y P++C CG C VCPV
Sbjct: 28 GEDQYYIDPDVCIDCGACEAVCPV 51
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 26.9 bits (58), Expect = 5.1
Identities = 49/211 (23%), Positives = 78/211 (36%), Gaps = 52/211 (24%)
Query: 8 QEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRL 67
++Y +IIT + LREN+R K Y E R
Sbjct: 57 KDYYKIITRPMDLQTLRENVR--------------KRLYPSREEFR-------------- 88
Query: 68 DEYLELFEKN-ATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHY 126
E+LEL KN AT NG K + ++ KEK K +A E +N
Sbjct: 89 -EHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK-------LARLEKAINPL 140
Query: 127 LKEKGIQAQETDLGELIIQLI----NEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEP 182
L + A L ++ Q + + P H V N+K + ++ +N P
Sbjct: 141 LDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPV-----NKKFVPDYYKVIVN------P 189
Query: 183 EKLNAIARKHMRKEFESFKMGISGVNFAIAN 213
L I + + +++S + + VN +AN
Sbjct: 190 MDLETIRKNISKHKYQSRESFLDDVNLILAN 220
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 133
Score = 26.6 bits (57), Expect = 6.6
Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 8 QEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRL 67
++ E+I + +++N AM+++++ + L ENLR + ++ +K+ +
Sbjct: 67 KDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAI-TDIMMKLSPQA 125
Query: 68 DEYL 71
+E L
Sbjct: 126 EELL 129
>pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 26.6 bits (57), Expect = 6.6
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Query: 124 NHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQI--GKIFEEKLNAA 177
N Y+ A G I+ NEH V ++V I K K+I GKI + ++N A
Sbjct: 302 NSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRA 357
>pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 26.6 bits (57), Expect = 6.6
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Query: 124 NHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQI--GKIFEEKLNAA 177
N Y+ A G I+ NEH V ++V I K K+I GKI + ++N A
Sbjct: 302 NSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRA 357
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,869,409
Number of Sequences: 13198
Number of extensions: 121391
Number of successful extensions: 346
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 45
length of query: 481
length of database: 2,899,336
effective HSP length: 92
effective length of query: 389
effective length of database: 1,685,120
effective search space: 655511680
effective search space used: 655511680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)