BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645983|ref|NP_208164.1| rod shape-determining
protein (mreB) [Helicobacter pylori 26695]
(347 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal... 322 5e-89
pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima 310 1e-85
pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Hea... 51 2e-07
pdb|1NGG| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 51 2e-07
pdb|1KAX| 70kd Heat Shock Cognate Protein Atpase Domain, ... 51 2e-07
pdb|1BA1| Heat-Shock Cognate 70kd Protein 44kd Atpase N-T... 51 2e-07
pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exc... 51 2e-07
pdb|1KAZ| 70kd Heat Shock Cognate Protein Atpase Domain, ... 51 2e-07
pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of B... 51 2e-07
pdb|1KAY| 70kd Heat Shock Cognate Protein Atpase Domain, ... 51 2e-07
pdb|3HSC| Heat-Shock Cognate 7okd Protein (44kd Atpase N-... 51 2e-07
pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Co... 51 2e-07
pdb|1NGH| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 51 2e-07
pdb|1BA0| Heat-Shock Cognate 70kd Protein 44kd Atpase N-T... 51 2e-07
pdb|1NGD| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 50 3e-07
pdb|1HJO|A Chain A, Heat-Shock 70kd Protein 42kd Atpase N-T... 50 3e-07
pdb|1NGC| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 50 3e-07
pdb|1NGB| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 50 4e-07
pdb|1NGF| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 49 6e-07
pdb|1NGA| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 49 6e-07
pdb|1ATR| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase ... 49 6e-07
pdb|1ATS| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase ... 49 8e-07
pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton He... 49 8e-07
pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton He... 49 8e-07
pdb|1NGE| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 49 8e-07
pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton He... 48 2e-06
pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga M... 37 0.004
pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima 36 0.006
pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhy... 31 0.24
pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf 30 0.41
pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From... 30 0.53
pdb|1MAB|A Chain A, Rat Liver F1-Atpase 28 1.2
pdb|1J6R|A Chain A, Crystal Structure Of Hypothetical Prote... 28 1.5
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexe... 27 3.4
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd (Dic... 27 3.4
pdb|1LNR|T Chain T, Crystal Structure Of The Large Ribosoma... 27 3.4
pdb|1KYI|G Chain G, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 27 4.5
pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase 27 4.5
pdb|1BHY| Low Temperature Middle Resolution Structure Of ... 27 4.5
pdb|1LLW|A Chain A, Structural Studies On The Synchronizati... 27 4.5
pdb|1BG0| Transition State Structure Of Arginine Kinase 26 7.6
pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin ... 26 7.6
pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein 26 7.6
pdb|1B9B|B Chain B, Triosephosphate Isomerase Of Thermotoga... 26 7.6
pdb|1AIN| Annexin I 26 7.6
pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein 26 7.6
pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1... 25 10.0
pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein ... 25 10.0
pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Co... 25 10.0
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
Length = 344
Score = 322 bits (824), Expect = 5e-89
Identities = 164/333 (49%), Positives = 233/333 (69%), Gaps = 7/333 (2%)
Query: 13 DIAIDLGTANTIVLVKGQGIIINEPSIVAVRMGLFDSKAYDILAVGSEAKEMLGKTPNSI 72
DI IDLGTANT+V ++G+GI++NEPS++A+ DS +IL VG EAK M+GKTP +I
Sbjct: 5 DIGIDLGTANTLVFLRGKGIVVNEPSVIAI-----DSTTGEILKVGLEAKNMIGKTPATI 59
Query: 73 RAIRPMKDGVIADYDITAKMIRYFIEKVHKRKTWIRPRIMVCVPYGLTSVERNAVKESTL 132
+AIRPM+DGVIADY + M+RYFI K +PR+++ VP G+T VER A+ ++ L
Sbjct: 60 KAIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGL 119
Query: 133 SAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLGGLVISKSIRVAG 192
AGA +VFLIEEPMAAAIG+ L V+EP G+++VDIGGGTTE+ VISLG +V +SIR+AG
Sbjct: 120 EAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVTWESIRIAG 179
Query: 193 DKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAI--KLDPPLTMEVSGRDQVSGLLHTI 250
D++D++IV+Y+R+ + + IGERT E +KIEIG K + L VSG D +GL +
Sbjct: 180 DEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKL 239
Query: 251 ELSSDDVFEAIKDQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGALIKGLDKYLSD 310
L +V EA++ V I ++R+ LE+ P+L DI++ G+ LTGGG+L++GLD L
Sbjct: 240 TLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQK 299
Query: 311 MVKLPVYVGDEPLLAVAKGTGEAIQDLDLLSRV 343
+ V +EPL AVAKG G + +++L ++
Sbjct: 300 ETGISVIRSEEPLTAVAKGAGMVLDKVNILKKL 332
>pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima
Length = 344
Score = 310 bits (795), Expect = 1e-85
Identities = 160/333 (48%), Positives = 227/333 (68%), Gaps = 7/333 (2%)
Query: 13 DIAIDLGTANTIVLVKGQGIIINEPSIVAVRMGLFDSKAYDILAVGSEAKEMLGKTPNSI 72
DI IDLGTANT+V ++G+GI++NEPS++A+ DS +IL VG EAK +GKTP +I
Sbjct: 5 DIGIDLGTANTLVFLRGKGIVVNEPSVIAI-----DSTTGEILKVGLEAKNXIGKTPATI 59
Query: 73 RAIRPMKDGVIADYDITAKMIRYFIEKVHKRKTWIRPRIMVCVPYGLTSVERNAVKESTL 132
+AIRP +DGVIADY + +RYFI K +PR+++ VP G+T VER A+ ++ L
Sbjct: 60 KAIRPXRDGVIADYTVALVXLRYFINKAKGGXNLFKPRVVIGVPIGITDVERRAILDAGL 119
Query: 133 SAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLGGLVISKSIRVAG 192
AGA +VFLIEEP AAAIG+ L V+EP G+ +VDIGGGTTE+ VISLG +V +SIR+AG
Sbjct: 120 EAGASKVFLIEEPXAAAIGSNLNVEEPSGNXVVDIGGGTTEVAVISLGSIVTWESIRIAG 179
Query: 193 DKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAI--KLDPPLTMEVSGRDQVSGLLHTI 250
D+ D++IV+Y+R+ + + IGERT E +KIEIG K + L VSG D +GL +
Sbjct: 180 DEXDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKL 239
Query: 251 ELSSDDVFEAIKDQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGALIKGLDKYLSD 310
L +V EA++ V I ++R+ LE+ P+L DI++ G+ LTGGG+L++GLD L
Sbjct: 240 TLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQK 299
Query: 311 MVKLPVYVGDEPLLAVAKGTGEAIQDLDLLSRV 343
+ V +EPL AVAKG G + +++L ++
Sbjct: 300 ETGISVIRSEEPLTAVAKGAGXVLDKVNILKKL 332
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1NGG| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 10 Replaced By Ser (D10s)
Length = 386
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1KAX| 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant
Length = 381
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1BA1| Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With
Cys 17 Replaced By Lys
Length = 386
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 51.2 bits (121), Expect = 2e-07
Identities = 60/254 (23%), Positives = 108/254 (41%), Gaps = 44/254 (17%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIV-DIGGG 170
++ VP +R A K++ AG +I EP AAA+ GL ++ V D+GGG
Sbjct: 139 VITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGG 198
Query: 171 TTEIGVISLGGLVISKSIRV---------AGDKLDQSIVEYIRKKFNLLIG--------- 212
T +I +I + + K+ V G+ D ++ Y+ ++F G
Sbjct: 199 TFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLA 258
Query: 213 ----ERTGEEIKIEIGCAIKLD---PPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQV 265
+ E+ KIE+ A + D P +T + +G ++ I+++ + ++D V
Sbjct: 259 MQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMN-----IKVTRAKLESLVEDLV 313
Query: 266 REISSALRSVLEEVKPDLAKDIVQNGVVLTGGGALIKGLDKYLSDMVKLPVYVGDEPLLA 325
L+ L++ ++ DI + V+L GG + + K K+ + G EP
Sbjct: 314 NRSIELLKVALQDAGLSVS-DI--DDVILVGGQTRMPMVQK------KVAEFFGKEPRKD 364
Query: 326 V----AKGTGEAIQ 335
V A G A+Q
Sbjct: 365 VNPDEAVAIGAAVQ 378
>pdb|1KAZ| 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant
Length = 381
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1KAY| 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant
Length = 381
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|3HSC| Heat-Shock Cognate 7okd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3)
pdb|1NGJ| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Complexed With Mg
pdb|1NGI| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Complexed With Ca
pdb|1HPM| 44k Atpase Fragment (N-Terminal) Of 7okda Heat-Shock Cognate
Protein (E.C.3.6.1.3)
Length = 386
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 162 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 221
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 222 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 281
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 282 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 340
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 341 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 371
>pdb|1NGH| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 10 Replaced By Asn (D10n)
Length = 386
Score = 51.2 bits (121), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1BA0| Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3
Length = 386
Score = 50.8 bits (120), Expect = 2e-07
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFKVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1NGD| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 206 Replaced By Asn
(D206n)
Length = 386
Score = 50.4 bits (119), Expect = 3e-07
Identities = 50/211 (23%), Positives = 87/211 (40%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT + ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFNVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1HJO|A Chain A, Heat-Shock 70kd Protein 42kd Atpase N-Terminal Domain
Length = 380
Score = 50.4 bits (119), Expect = 3e-07
Identities = 60/223 (26%), Positives = 95/223 (41%), Gaps = 37/223 (16%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGL--PVKEPQGSLIVDIGG 169
++ VP +R A K++ + AG + +I EP AAAI GL K + LI D+GG
Sbjct: 141 VITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKGERNVLIFDLGG 200
Query: 170 GTTEIGVISLGGLVISKSIRVAGD----------KLDQSIVEYIRKKFNLLIGERTGEEI 219
GT ++ ++++ + AGD +L VE ++K I +
Sbjct: 201 GTFDVSILTIDDGIFEVK-ATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVR 259
Query: 220 KIEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAI-------KDQVREISSAL 272
++ C E + R S ++E+ D +FE I + + E+ S L
Sbjct: 260 RLRTAC----------ERAKRTLSSSTQASLEI--DSLFEGIDFYTSITRARFEELCSDL 307
Query: 273 -RSVLEEVKP---DLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
RS LE V+ D D Q + +VL GG I + K L D
Sbjct: 308 FRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQD 350
>pdb|1NGC| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 206 Replaced By Ser
(D206s)
Length = 386
Score = 50.4 bits (119), Expect = 3e-07
Identities = 50/211 (23%), Positives = 87/211 (40%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT + ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFSVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1NGB| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Glu 175 Replaced By Gln
(E175q)
Length = 386
Score = 50.1 bits (118), Expect = 4e-07
Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I +P AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINQPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1NGF| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 199 Replaced By Asn
(D199n)
Length = 386
Score = 49.3 bits (116), Expect = 6e-07
Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI ++GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFNLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1NGA| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Glu 175 Replaced By Ser
(E175s)
Length = 386
Score = 49.3 bits (116), Expect = 6e-07
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I P AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINSPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1ATR| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase N-Terminal
Fragment) (E.C.3.6.1.3) Mutant With Thr 204 Replaced By
Val (T204v)
Length = 386
Score = 49.3 bits (116), Expect = 6e-07
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
G ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GVFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1ATS| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase N-Terminal
Fragment) (E.C.3.6.1.3) Mutant With Thr 204 Replaced By
Glu (T204e)
Length = 386
Score = 48.9 bits (115), Expect = 8e-07
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI D+GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
G ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GEFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 48.9 bits (115), Expect = 8e-07
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGL--PVKEPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL V + LI D+GG
Sbjct: 140 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKAVGAERNVLIFDLGG 199
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEYIRKKFNLL----IGERTGEEIK 220
GT + ++++ G+ KS + G+ D +V + +F I E +
Sbjct: 200 GTFSVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRAHAKDISENKRAVRR 259
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 260 LATACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 318
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 319 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 349
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 48.9 bits (115), Expect = 8e-07
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLP--VKEPQGSLIVDIGG 169
+V VP +R A K++ AG + +I P AAAI GL V + LI D+GG
Sbjct: 140 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINSPTAAAIAYGLDKAVGAERNVLIFDLGG 199
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 200 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 259
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 260 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 318
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 319 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 349
>pdb|1NGE| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 199 Replaced By Ser
(D199s)
Length = 386
Score = 48.9 bits (115), Expect = 8e-07
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGLPVK--EPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL K + LI +GG
Sbjct: 143 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFSLGG 202
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEY----IRKKFNLLIGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + ++K I E +
Sbjct: 203 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 263 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 352
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 47.8 bits (112), Expect = 2e-06
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 13/211 (6%)
Query: 112 MVCVPYGLTSVERNAVKESTLSAGAREVFLIEEPMAAAIGAGL--PVKEPQGSLIVDIGG 169
+V VP +R A K++ AG + +I EP AAAI GL V + LI +GG
Sbjct: 140 VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKAVGAERNVLIFSLGG 199
Query: 170 GTTEIGVISL-GGLVISKS----IRVAGDKLDQSIVEYIRKKFNLL----IGERTGEEIK 220
GT ++ ++++ G+ KS + G+ D +V + +F I E +
Sbjct: 200 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRAHAKDISENKRAVRR 259
Query: 221 IEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVK 280
+ C + L+ ++ L I+ + ++ ++ +E+
Sbjct: 260 LRTACE-RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 318
Query: 281 PDLAKDIVQ-NGVVLTGGGALIKGLDKYLSD 310
D D Q + +VL GG I + K L D
Sbjct: 319 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQD 349
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 36.6 bits (83), Expect = 0.004
Identities = 21/62 (33%), Positives = 35/62 (55%), Gaps = 3/62 (4%)
Query: 261 IKDQVREISSALRSVLEEVKPDLAKDI---VQNGVVLTGGGALIKGLDKYLSDMVKLPVY 317
I ++REI S + EV+ + ++ + GVVLTGGGA I +++ +++ K PV
Sbjct: 298 IHARLREIXSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVR 357
Query: 318 VG 319
G
Sbjct: 358 TG 359
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
Length = 419
Score = 36.2 bits (82), Expect = 0.006
Identities = 21/62 (33%), Positives = 35/62 (55%), Gaps = 3/62 (4%)
Query: 261 IKDQVREISSALRSVLEEVKPDLAKDI---VQNGVVLTGGGALIKGLDKYLSDMVKLPVY 317
I ++REI S + EV+ + ++ + GVVLTGGGA I +++ +++ K PV
Sbjct: 298 IHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVR 357
Query: 318 VG 319
G
Sbjct: 358 TG 359
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 30.8 bits (68), Expect = 0.24
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 160 QGSLIVDIGGGTTEI-GVISLGGLVISKSIRVAGD--KLDQSIVEYIR--KKFNLLIGER 214
+G + IGGG + + I L G+V ++ K DQ + + +R K ++++ +
Sbjct: 143 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQ 202
Query: 215 TGEEIKIEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELS 253
T E +K D + + RD+VSG +H IEL+
Sbjct: 203 TTE---------VKGDGSKVVGLEYRDRVSGDIHNIELA 232
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 30.0 bits (66), Expect = 0.41
Identities = 34/143 (23%), Positives = 63/143 (43%), Gaps = 15/143 (10%)
Query: 160 QGSLIVDIGGGTTEI-GVISLGGLVISKSIRVAGD--KLDQSIVEYIR--KKFNLLIGER 214
+G + IGGG + + I L G+V ++ K DQ + + +R K ++++ +
Sbjct: 354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQ 413
Query: 215 TGEEIKIEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSAL-R 273
T E +K D + + RD+VSG +H++ L+ V + + AL R
Sbjct: 414 TTE---------VKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALER 464
Query: 274 SVLEEVKPDLAKDIVQNGVVLTG 296
+ + E+ D + GV G
Sbjct: 465 NRMGEIIIDAKCETSVKGVFAAG 487
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 29.6 bits (65), Expect = 0.53
Identities = 62/327 (18%), Positives = 126/327 (37%), Gaps = 63/327 (19%)
Query: 16 IDLGTANTIVLVKGQGIIINEPSIVAVRMGLFDSKAYDILAVGSEAKEMLGKTPNSIRAI 75
ID+ TA + +K +N+ S VA ++G + +G + E + + N
Sbjct: 120 IDVATAKVVEAIKSAARPVNDSSEVA-QVGTISANGESF--IGQQIAEAMQRVGNEGVIT 176
Query: 76 RPMKDGVIADYDITAKM-------IRYFIEKVHKRKTWIRPRIMVCVPYGLTSVERNAVK 128
G+ + ++ M YF+ K + ++ L+S++
Sbjct: 177 VEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPL 236
Query: 129 ESTLSAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIV---------DIGGGTTEIGVISL 179
++ + + ++ E + A L V + +G L + D + I
Sbjct: 237 LESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILT 296
Query: 180 GGLVISKSIRVAGDKLDQSIVEYIRK-------KFNLLIGERTGEEIKIEIGCAIKLDPP 232
GG VIS+ + G KL+ ++ + + K N I + GE+ +IE
Sbjct: 297 GGQVISEDL---GMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEA--------- 344
Query: 233 LTMEVSGRDQVSGLLHTIELSSDDVF-EAIKDQVREISSALRSV----LEEVKPDLAKD- 286
+VS + IE ++ D E ++++V +++ + + + E++ KD
Sbjct: 345 ---------RVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDR 395
Query: 287 ----------IVQNGVVLTGGGALIKG 303
VQ G+V+ GG AL++G
Sbjct: 396 VDDALNATRAAVQEGIVVGGGVALVQG 422
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 263 DQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGALIKGLDKYLSDMVKLPVYVGDEP 322
+++ E SS L+ + ++PD GVV+ G LIK D + V VGDE
Sbjct: 50 EEMVEFSSGLKGMSLNLEPDNV------GVVVFGNDKLIKEGDIVKRTGAIVDVPVGDEL 103
Query: 323 LLAVAKGTGEAI 334
L V G AI
Sbjct: 104 LGRVVDALGNAI 115
>pdb|1J6R|A Chain A, Crystal Structure Of Hypothetical Protein (Tm0269) From
Thermotoga Maritima At 2.2 A Resolution
pdb|1J6R|B Chain B, Crystal Structure Of Hypothetical Protein (Tm0269) From
Thermotoga Maritima At 2.2 A Resolution
Length = 214
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/54 (37%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Query: 158 EPQGSLIVDIGGGTTEIGVISLGGL-VISKSIRVAGDKLDQSIVEYIRKKFNLL 210
E GSL D T E+ L G +I+ + G K+D+ I EY RK +LL
Sbjct: 71 EVDGSLSFDDMRLTGELATKHLSGSKIITVFLATLGKKVDEKIEEYFRKGEDLL 124
>pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
Length = 510
Score = 26.9 bits (58), Expect = 3.4
Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 6/72 (8%)
Query: 263 DQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGALIKGLDKYLSDMVKLPVYVGDEP 322
+++ E SS L+ + ++PD GVV+ G LIK D + V VG+E
Sbjct: 50 EEMVEFSSGLKGMSLNLEPDNV------GVVVFGNDKLIKEGDIVKRTGAIVDVPVGEEL 103
Query: 323 LLAVAKGTGEAI 334
L V G AI
Sbjct: 104 LGRVVDALGNAI 115
>pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 510
Score = 26.9 bits (58), Expect = 3.4
Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 6/72 (8%)
Query: 263 DQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGALIKGLDKYLSDMVKLPVYVGDEP 322
+++ E SS L+ + ++PD GVV+ G LIK D + V VG+E
Sbjct: 50 EEMVEFSSGLKGMSLNLEPDNV------GVVVFGNDKLIKEGDIVKRTGAIVDVPVGEEL 103
Query: 323 LLAVAKGTGEAI 334
L V G AI
Sbjct: 104 LGRVVDALGNAI 115
>pdb|1LNR|T Chain T, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 237
Score = 26.9 bits (58), Expect = 3.4
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 35/137 (25%)
Query: 166 DIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNLLIGER-TGEEIKIEIG 224
++ GG +I V +L +++ R ++ Q +V + K + IG+ T +IK+ G
Sbjct: 107 EVQGGLVDIVVHNLQ--IVAPGPR----RIPQELVVDVTK---MNIGDHITAGDIKLPEG 157
Query: 225 CAIKLDPPLTM---------------EVSGRDQVSGLLHTIELSSDDVFEAIKDQVREIS 269
C + DP LT+ EV QV+GL+ EL S++ EA+ +
Sbjct: 158 CTLAADPELTVVSVLPPRLTAEELEAEVQAA-QVAGLVAAGEL-SEEAAEAVLEG----- 210
Query: 270 SALRSVLEEVKPDLAKD 286
+ LEEVK + ++D
Sbjct: 211 ---DASLEEVKAEASED 224
>pdb|1KYI|G Chain G, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|H Chain H, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|I Chain I, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|J Chain J, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|K Chain K, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|L Chain L, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|M Chain M, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|N Chain N, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|O Chain O, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|P Chain P, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|Q Chain Q, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|R Chain R, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1JJW|C Chain C, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1G3I|I Chain I, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|L Chain L, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3K|C Chain C, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1JJW|B Chain B, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1G3I|G Chain G, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|H Chain H, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|J Chain J, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|K Chain K, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3K|A Chain A, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|B Chain B, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1JJW|A Chain A, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1G3I|M Chain M, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|N Chain N, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|Q Chain Q, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|O Chain O, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|P Chain P, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|R Chain R, Crystal Structure Of The Hsluv Protease-Chaperone Complex
Length = 174
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 128 KESTLSAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLGGLVISKS 187
KES + G +V EE AIG+G +V+ TE+ ++ KS
Sbjct: 101 KESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE----NTELSAHE----IVEKS 152
Query: 188 IRVAGD 193
+R+AGD
Sbjct: 153 LRIAGD 158
>pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
Query: 126 AVKESTLSAGAREV---FLIEEPMAAAIGAGLPVKEPQGSLIVDIGGG 170
A K ++AG+R F+ E+P L +KE G L++ IGGG
Sbjct: 148 AFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEVPGKLLI-IGGG 194
>pdb|1BHY| Low Temperature Middle Resolution Structure Of P64k From Masc Data
Length = 482
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
Query: 126 AVKESTLSAGAREV---FLIEEPMAAAIGAGLPVKEPQGSLIVDIGGG 170
A K ++AG+R F+ E+P L +KE G L++ IGGG
Sbjct: 148 AFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEVPGKLLI-IGGG 194
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
Length = 1520
Score = 26.6 bits (57), Expect = 4.5
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 193 DKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAIKLDPPLTMEVSGRDQVSGLLHTIEL 252
+ L S+ ++ K+ NLL E K E IKL PL EV + +G L E+
Sbjct: 512 ENLVMSLAMFLGKRGNLL-------EPKAESARTIKLRSPLVNEVELQAIKTGQLQVAEV 564
Query: 253 SS---DDVFEAIKDQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGALIKGL 304
S+ D +++D + + + ++ L NG +LT + I L
Sbjct: 565 STLYDLDGVNSLEDALTNLVKTAIATVQAGAEILVLTDRPNGAILTENQSFIPPL 619
>pdb|1BG0| Transition State Structure Of Arginine Kinase
Length = 356
Score = 25.8 bits (55), Expect = 7.6
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 181 GLVISKSIRVAGDKL--DQSIVEYIRKKFNLLIGERTGEEIKIEIG---CAIKLDPPLTM 235
G + S+ + KL D+ ++E I KFNL + GE + E G + K LT
Sbjct: 275 GTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTE 334
Query: 236 EVSGRDQVSGLLHTIEL 252
+ R+ G+L I++
Sbjct: 335 YQAVREMQDGILEMIKM 351
>pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin 1
pdb|1HM6|B Chain B, X-Ray Structure Of Full-Length Annexin 1
Length = 346
Score = 25.8 bits (55), Expect = 7.6
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 241 DQVSGLLHTIELSSDDVFEAIKDQV-REISSALRSVLEEVKPDLAKDIVQN 290
D++ + + D + E + + REI R EE+K DLAKDI +
Sbjct: 121 DELRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAKDITSD 171
>pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein
Length = 533
Score = 25.8 bits (55), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 275 VLEEVKPDLAKDIVQNGVVLTGGGALIKGLDKY 307
VLE++KPD+ ++ V+ GG L K L Y
Sbjct: 451 VLEKLKPDMFFAGIKEKFVIQKGGVLSKQLHSY 483
>pdb|1B9B|B Chain B, Triosephosphate Isomerase Of Thermotoga Maritima
pdb|1B9B|A Chain A, Triosephosphate Isomerase Of Thermotoga Maritima
Length = 255
Score = 25.8 bits (55), Expect = 7.6
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 189 RVAGDKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAIKLDPPLTMEVSGRDQVSGLLH 248
RVA + Q + +IRK + + E T I+I G +IK D L + V +D GL+
Sbjct: 177 RVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQ-KDIDGGLVG 235
Query: 249 TIELSSDDVFEAIKDQVREISSALRSVL 276
L K+ E++ +R V+
Sbjct: 236 GASL---------KESFIELARIMRGVI 254
>pdb|1AIN| Annexin I
Length = 314
Score = 25.8 bits (55), Expect = 7.6
Identities = 15/51 (29%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 241 DQVSGLLHTIELSSDDVFEAIKDQV-REISSALRSVLEEVKPDLAKDIVQN 290
D++ + + D + E + + +EI R EE+K DLAKDI +
Sbjct: 89 DELRAAMKGLGTDEDTLIEILASRTNKEIRDINRVYREELKRDLAKDITSD 139
>pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein
Length = 525
Score = 25.8 bits (55), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 275 VLEEVKPDLAKDIVQNGVVLTGGGALIKGLDKY 307
VLE++KPD+ ++ V+ GG L K L Y
Sbjct: 451 VLEKLKPDMFFAGIKEKFVIQKGGVLSKQLHSY 483
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 507
Score = 25.4 bits (54), Expect = 10.0
Identities = 38/193 (19%), Positives = 72/193 (36%), Gaps = 12/193 (6%)
Query: 122 VERNAVKESTLSAGAREVFLIEEPMAAAIGAGLP-----VKEPQGSLIVDIGGG------ 170
+ER A S L G+ I E A + A +P + + Q L D+
Sbjct: 299 LERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAI 358
Query: 171 TTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAIKLD 230
I V +G K+++ KL + ++ + + + ++ +L
Sbjct: 359 NVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLR 418
Query: 231 PPLTMEVSGRDQVSGLLHTIELSSDDVFEAIK-DQVREISSALRSVLEEVKPDLAKDIVQ 289
L S V + TI ++ ++++ DQVR+ LR+ ++ KP+ + I
Sbjct: 419 ELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISS 478
Query: 290 NGVVLTGGGALIK 302
AL+K
Sbjct: 479 TKTFTEEAEALLK 491
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From
Methanococcus Jannaschii
Length = 219
Score = 25.4 bits (54), Expect = 10.0
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 24 IVLVKGQGIIINEPSIVAVRMGLFDSKAYDI--LAVGSEAKEMLGKTPNSIRAIRPMKDG 81
+VL G+G E I + G +A ++ + E E LGK +R I D
Sbjct: 48 VVLPHGRG---KEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDF 104
Query: 82 VIADYDITAKMIRY 95
IA D+ + RY
Sbjct: 105 FIAQADLMPLIGRY 118
>pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Nicotinamide-Adenine-Dinucleotide (Nad+)
Length = 458
Score = 25.4 bits (54), Expect = 10.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 163 LIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIV 200
L++ G + E+ ++ LGG VIS + +A L Q +V
Sbjct: 138 LLLATGSSSVELPMLPLGGPVISSTEALAPKALPQHLV 175
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.140 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,894,747
Number of Sequences: 13198
Number of extensions: 80299
Number of successful extensions: 268
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 70
length of query: 347
length of database: 2,899,336
effective HSP length: 89
effective length of query: 258
effective length of database: 1,724,714
effective search space: 444976212
effective search space used: 444976212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)