BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645985|ref|NP_208166.1| UDP-N-acetylglucosamine
acyltransferase (lpxA) [Helicobacter pylori 26695]
(270 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LXA| Udp N-Acetylglucosamine Acyltransferase 189 4e-49
pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I) >g... 34 0.015
pdb|1XAT| Structure Of The Hexapeptide Xenobiotic Acetylt... 34 0.020
pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Comple... 31 0.13
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-... 31 0.13
pdb|1JB0|L Chain L, Crystal Structure Of Photosystem I: A P... 29 0.65
pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Ace... 28 0.85
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of ... 27 1.9
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamin... 26 4.2
pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Co... 25 9.4
pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Co... 25 9.4
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Comp... 25 9.4
pdb|1ACF| Acanthamoeba Castellanii Profilin Ib 25 9.4
pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sul... 25 9.4
>pdb|1LXA| Udp N-Acetylglucosamine Acyltransferase
Length = 262
Score = 189 bits (479), Expect = 4e-49
Identities = 105/251 (41%), Positives = 147/251 (57%), Gaps = 3/251 (1%)
Query: 7 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGT 66
TAI+ A I IG FC++G V++ EG L ++V + GHT +G++ EI+ FA +G
Sbjct: 11 TAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGE 70
Query: 67 QPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIG 126
QDLKY GE + + IG+ N IRE I+ GT G T +G NLLM H+AHDC +G
Sbjct: 71 VNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVG 130
Query: 127 SHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGN 186
+ CILAN TLAGH+ + D+ IGG+TA+HQF I M+ G S + +DVPPY +GN
Sbjct: 131 NRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGN 190
Query: 187 RAFIRGLNRHRMRQLLESKD-IDFIYALYKRLFRPIPSLRESAKLELEEHANN-PFVKEI 244
A G+N +++ S++ I I YK ++R +L E K E+ E A P VK
Sbjct: 191 HATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKTLDE-VKPEIAELAETYPEVKAF 249
Query: 245 CSFILESSRGV 255
F S+RG+
Sbjct: 250 TDFFARSTRGL 260
>pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I)
pdb|1KK6|C Chain C, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|D Chain D, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|A Chain A, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|F Chain F, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KHR|D Chain D, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK6|A Chain A, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|B Chain B, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|C Chain C, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK5|C Chain C, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|D Chain D, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|E Chain E, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|A Chain A, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|B Chain B, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|C Chain C, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|B Chain B, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|E Chain E, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|F Chain F, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|A Chain A, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|F Chain F, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK4|E Chain E, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
Length = 209
Score = 34.3 bits (77), Expect = 0.015
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 10/134 (7%)
Query: 77 YSELIIGEDNLIREFCMINPGTE---GGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILAN 133
Y I+ + I +FC I PG G + G Y H +
Sbjct: 52 YHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGS-----TYPFNLFGNGWEKHMPKLD 106
Query: 134 GVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRA--FIR 191
+ + G IG+ V IG I V+I G ++A S + KD+ PY GN A +
Sbjct: 107 QLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQ 166
Query: 192 GLNRHRMRQLLESK 205
++ + QLL+ K
Sbjct: 167 RFDQDTINQLLDIK 180
Score = 28.1 bits (61), Expect = 1.1
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 21/93 (22%)
Query: 16 INKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGT-------QP 68
+N ++IG+FC IG GV + + N + G T +PF + G +
Sbjct: 57 LNDKLKIGKFCSIGPGVTI---IMNGANHRMDGST--------YPFNLFGNGWEKHMPKL 105
Query: 69 QDLKYKGEYSELIIGEDNLIREFCMINPGTEGG 101
L KG + IIG D I + +I PG + G
Sbjct: 106 DQLPIKG---DTIIGNDVWIGKDVVIMPGVKIG 135
>pdb|1XAT| Structure Of The Hexapeptide Xenobiotic Acetyltransferase From
Pseudomonas Aeruginosa
pdb|2XAT| Complex Of The Hexapeptide Xenobiotic Acetyltransferase With
Chloramphenicol And Desulfo-Coenzyme A
Length = 212
Score = 33.9 bits (76), Expect = 0.020
Identities = 21/56 (37%), Positives = 26/56 (45%)
Query: 133 NGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRA 188
NG AG IG V IG VR+ G +I ++ + DV PY V GN A
Sbjct: 103 NGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPA 158
Score = 27.3 bits (59), Expect = 1.9
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 25/114 (21%)
Query: 22 IGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELI 81
IG FC IG G + N QGH +T FPF + +P + G +
Sbjct: 59 IGSFCSIGSGAAF---IMAGN----QGHRAEWAST--FPFHFMHEEPA---FAGAVNGYQ 106
Query: 82 IGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGV 135
D LI + IG + + M V V H +IGS ++ V
Sbjct: 107 PAGDTLIGH-------------EVWIGTEAMFMPGVRVGHGAIIGSRALVTGDV 147
>pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|B Chain B, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|C Chain C, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRV|A Chain A, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|B Chain B, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|C Chain C, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRR|C Chain C, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|C Chain C, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|A Chain A, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|B Chain B, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|B Chain B, Galactoside Acetyltransferase In Complex With Coenzyme A
Length = 203
Score = 31.2 bits (69), Expect = 0.13
Identities = 24/79 (30%), Positives = 34/79 (42%)
Query: 107 IGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCM 166
IGD L+ V ++ H + NG + I IG+ V IG I+ V I +
Sbjct: 98 IGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSV 157
Query: 167 IAGKSALGKDVPPYCTVEG 185
I S + KD+PP G
Sbjct: 158 IGAGSIVTKDIPPNVVAAG 176
>pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
Length = 459
Score = 31.2 bits (69), Expect = 0.13
Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 32/164 (19%)
Query: 32 VKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREF 91
V++ V++ NVTL+G T +G T + GT D IG +I
Sbjct: 266 VEIASEVQIEANVTLKGQTKIGAETVL----TNGTYVVD---------STIGAGAVI--- 309
Query: 92 CMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGG 151
T I+++ + D ++ Y H+ + +G+ + N V + G IG+ G
Sbjct: 310 ------TNSMIEESSVADGVIVGPYAHIRPNSSLGAQVHIGNFVEVKGS-SIGENTKAGH 362
Query: 152 LTAIHQF-----VRIAKGCMIAGKSALGKDVPPYCTVEGNRAFI 190
LT I V G + K Y TV GN F+
Sbjct: 363 LTYIGNCEVGSNVNFGAGTITVNYDGKNK----YKTVIGNNVFV 402
>pdb|1JB0|L Chain L, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
Length = 154
Score = 28.9 bits (63), Expect = 0.65
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 96 PGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGH-IEIG-----DYVNI 149
P ++ G+ KT IG+ L AY + G +A+G L G +++G D N+
Sbjct: 20 PISDSGLVKTFIGN---LPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANL 76
Query: 150 GGLTAIHQFVRIAKGCMIA----GKSALGKDVPPYCTVEGNRAFIRG 192
GGL + + +A C+ A G P T EG F G
Sbjct: 77 GGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAG 123
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
Length = 468
Score = 28.5 bits (62), Expect = 0.85
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 29/171 (16%)
Query: 32 VKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKY-------KGEYSELIIGE 84
V++ V++ NV L+G T +G T + GT D E + +
Sbjct: 275 VEIAPEVQIEANVILKGQTKIGAETVL----TNGTYVVDSTIGAGAVITNSMIEESSVAD 330
Query: 85 DNLIREFCMINPGTEGG----------IKKTLIGDKNLLMAYVHVAHDCVIGSHCILANG 134
+ + I P + G +K + IG+ N ++ +C +GS+ G
Sbjct: 331 GVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGE-NTKAGHLTYIGNCEVGSNVNFGAG 389
Query: 135 VTLAGH-------IEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVP 178
+ IGD V +G + I V + ++ S + KDVP
Sbjct: 390 TITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVP 440
>pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
Length = 456
Score = 27.3 bits (59), Expect = 1.9
Identities = 39/171 (22%), Positives = 65/171 (37%), Gaps = 30/171 (17%)
Query: 29 GDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNL- 87
G V++D V + NVTL +G + +V+G + Y ++ + NL
Sbjct: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGC-VIKNSVIGDDCEISPYT------VVEDANLA 321
Query: 88 ----IREFCMINPGTE----------GGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILAN 133
I F + PG E +KK +G K ++ D IG + +
Sbjct: 322 AACTIGPFARLRPGAELLEGAHVGNFVEMKKARLG-KGSKAGHLTYLGDAEIGDNVNIGA 380
Query: 134 GVTLAGH-------IEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDV 177
G + IGD V +G T + V + KG IA + + ++V
Sbjct: 381 GTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNV 431
Score = 26.2 bits (56), Expect = 4.2
Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 3/56 (5%)
Query: 131 LANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTVE 184
L +T +EI V I G + V+I GC+I S +G D + PY VE
Sbjct: 262 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK-NSVIGDDCEISPYTVVE 316
>pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
Length = 331
Score = 26.2 bits (56), Expect = 4.2
Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 3/56 (5%)
Query: 131 LANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTVE 184
L +T +EI V I G + V+I GC+I S +G D + PY VE
Sbjct: 262 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK-NSVIGDDCEISPYTVVE 316
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 25.0 bits (53), Expect = 9.4
Identities = 26/90 (28%), Positives = 43/90 (46%), Gaps = 9/90 (10%)
Query: 50 TFVGKNTEIFPFAVLGTQPQDL--KYKGEYSELI--IGEDNLIREFCMINPGTEGGIKKT 105
TF N + P A L P DL K + E+I I + +L R + + + +
Sbjct: 371 TFAYTNHTVLPEA-LERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMS 429
Query: 106 LIGDKNLLMAYVHVAHDCVIGSHCILANGV 135
LI ++ +++AH C++GSH + NGV
Sbjct: 430 LIEEEG--SKRINMAHLCIVGSHAV--NGV 455
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
Length = 847
Score = 25.0 bits (53), Expect = 9.4
Identities = 26/90 (28%), Positives = 43/90 (46%), Gaps = 9/90 (10%)
Query: 50 TFVGKNTEIFPFAVLGTQPQDL--KYKGEYSELI--IGEDNLIREFCMINPGTEGGIKKT 105
TF N + P A L P DL K + E+I I + +L R + + + +
Sbjct: 372 TFAYTNHTVLPEA-LERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMS 430
Query: 106 LIGDKNLLMAYVHVAHDCVIGSHCILANGV 135
LI ++ +++AH C++GSH + NGV
Sbjct: 431 LIEEEG--SKRINMAHLCIVGSHAV--NGV 456
>pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
Length = 846
Score = 25.0 bits (53), Expect = 9.4
Identities = 26/90 (28%), Positives = 43/90 (46%), Gaps = 9/90 (10%)
Query: 50 TFVGKNTEIFPFAVLGTQPQDL--KYKGEYSELI--IGEDNLIREFCMINPGTEGGIKKT 105
TF N + P A L P DL K + E+I I + +L R + + + +
Sbjct: 371 TFAYTNHTVLPEA-LERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMS 429
Query: 106 LIGDKNLLMAYVHVAHDCVIGSHCILANGV 135
LI ++ +++AH C++GSH + NGV
Sbjct: 430 LIEEEG--SKRINMAHLCIVGSHAV--NGV 455
>pdb|1ACF| Acanthamoeba Castellanii Profilin Ib
Length = 125
Score = 25.0 bits (53), Expect = 9.4
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 132 ANGVTLAGHIEIGDYVNIGG--LTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAF 189
A G TLAG D + GG L +H A I GK K TV+ ++A
Sbjct: 40 AQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIYGK----KGSSGVITVKTSKAI 95
Query: 190 IRGLNRHRMR 199
+ G+ +++
Sbjct: 96 LVGVYNEKIQ 105
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|B Chain B, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|C Chain C, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
Length = 211
Score = 25.0 bits (53), Expect = 9.4
Identities = 17/64 (26%), Positives = 31/64 (47%), Gaps = 6/64 (9%)
Query: 188 AFIRGLNRHRMRQLLESKDIDFIYAL-----YKRLFRPIPSLRESAKLELEEHANNPFVK 242
A + +N H M + + +I I+A+ +RLF +P + +A + NP +
Sbjct: 25 ATLHAVNGHSMTNVPDGMEIA-IFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYR 83
Query: 243 EICS 246
E+CS
Sbjct: 84 EVCS 87
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.140 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,564,330
Number of Sequences: 13198
Number of extensions: 67156
Number of successful extensions: 220
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 23
length of query: 270
length of database: 2,899,336
effective HSP length: 87
effective length of query: 183
effective length of database: 1,751,110
effective search space: 320453130
effective search space used: 320453130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)