BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645987|ref|NP_208168.1| hypothetical protein
[Helicobacter pylori 26695]
         (146 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1H2H|A  Chain A, Crystal Structure Of Tm1643                   24  6.1
pdb|1J5P|A  Chain A, Crystal Structure Of Conserved Hypothet...    24  6.1

>pdb|1H2H|A Chain A, Crystal Structure Of Tm1643
          Length = 241

 Score = 24.3 bits (51), Expect = 6.1
 Identities = 9/39 (23%), Positives = 23/39 (58%)

Query: 63  PFALRKYEFEVPTPLKILLELEGAKSVLVANIMVVQTPI 101
           P  +R  EF+VP+ +  ++E    ++V   ++ +++ P+
Sbjct: 35  PGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQILKNPV 73



>pdb|1J5P|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
           (Tm1643) From Thermotoga Maritima At 1.9 A Resolution
          Length = 253

 Score = 24.3 bits (51), Expect = 6.1
 Identities = 9/39 (23%), Positives = 23/39 (58%)

Query: 63  PFALRKYEFEVPTPLKILLELEGAKSVLVANIMVVQTPI 101
           P  +R  EF+VP+ +  ++E    ++V   ++ +++ P+
Sbjct: 47  PGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQILKNPV 85



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.324    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 711,295
Number of Sequences: 13198
Number of extensions: 23518
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 2
length of query: 146
length of database: 2,899,336
effective HSP length: 80
effective length of query: 66
effective length of database: 1,843,496
effective search space: 121670736
effective search space used: 121670736
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)