BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645988|ref|NP_208169.1| competence lipoprotein
(comL) [Helicobacter pylori 26695]
         (220 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1J77|A  Chain A, Crystal Structure Of Gram-Negative Bact...    25  5.4

>pdb|1J77|A Chain A, Crystal Structure Of Gram-Negative Bacterial Heme
           Oxygenase Complexed With Heme
          Length = 209

 Score = 25.4 bits (54), Expect = 5.4
 Identities = 15/49 (30%), Positives = 29/49 (58%), Gaps = 3/49 (6%)

Query: 101 IKRFGTKDNVDYLTFLKLQSHYYAFKNHSKDQEFISNSIVSLGEFIEKY 149
           ++ F +K+N  Y+ FLKLQS ++   +H      ++ +I  L E++ +Y
Sbjct: 33  VQPFVSKEN--YIKFLKLQSVFHKAVDHIYKDAELNKAIPEL-EYMARY 78



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.321    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,297,892
Number of Sequences: 13198
Number of extensions: 52328
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 1
length of query: 220
length of database: 2,899,336
effective HSP length: 85
effective length of query: 135
effective length of database: 1,777,506
effective search space: 239963310
effective search space used: 239963310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)