BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645990|ref|NP_208171.1| prephenate dehydrogenase
(tyrA) [Helicobacter pylori 26695]
(265 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T7... 30 0.37
pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosac... 28 1.4
pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant 28 1.4
pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant 28 1.4
pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant 28 1.4
pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant 28 1.4
pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k,... 28 1.4
pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase Fr... 28 1.4
pdb|1HRB| Hemerythrin B 27 1.8
pdb|1J5P|A Chain A, Crystal Structure Of Conserved Hypothet... 27 3.1
pdb|1H2H|A Chain A, Crystal Structure Of Tm1643 26 4.1
pdb|1BC9| Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Ave... 26 5.4
pdb|1SYB| Staphylococcal Nuclease (E.C.3.1.31.1) With Res... 25 7.0
pdb|1KDB| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant W... 25 7.0
pdb|2SOB| Sn-Ob, Ob-Fold Sub-Domain Of Staphylococcal Nuc... 25 7.0
pdb|1STA| Staphylococcal Nuclease (E.C.3.1.31.1) Double I... 25 7.0
pdb|1SNM| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant (... 25 7.0
pdb|1SND|A Chain A, Staphylococcal Nuclease Dimer Containin... 25 7.0
pdb|1EY7|A Chain A, Structure Of S. Nuclease Stabilizing Mu... 25 7.0
pdb|2SNS| Staphylococcal Nuclease (E.C.3.1.33.1) Complex ... 25 7.0
pdb|1EY9|A Chain A, Structure Of S. Nuclease Stabilizing Qu... 25 7.0
pdb|1KAB| Staphylococcal Nuclease (E.C.3.1.33.1) Mutant W... 25 7.0
pdb|1SNP| Protein Stability In Staphylococcal Nuclease 25 7.0
pdb|1KAA| Staphylococcal Nuclease (E.C.3.1.33.1) Mutant W... 25 7.0
pdb|1STB| Staphylococcal Nuclease (E.C.3.1.31.1) Insertio... 25 7.0
pdb|1SYD| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant W... 25 7.0
pdb|1SYF| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant W... 25 7.0
pdb|1NSN|S Chain S, Immunoglobulin, Staphylococcal Nuclease... 25 7.0
pdb|1EYA|A Chain A, Structure Of S. Nuclease Stabilizing Qu... 25 7.0
pdb|1ENC| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant W... 25 7.0
pdb|1JOK|A Chain A, Averaged Structure For Staphylococcal N... 25 7.0
pdb|1EY0|A Chain A, Structure Of Wild-Type S. Nuclease At 1... 25 7.0
pdb|1SYG| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant W... 25 7.0
pdb|1STY| Staphylococcal Nuclease (E.C.3.1.31.1) Insertio... 25 7.0
pdb|1KDC| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant W... 25 7.0
pdb|1NUC| Staphylococcal Nuclease, V23c Variant 25 7.0
pdb|1EY5|A Chain A, Structure Of S. Nuclease Stabilizing Mu... 25 7.0
pdb|3NUC| Staphlococcal Nuclease, 1-N-Propane Thiol Disul... 25 7.0
pdb|1EY6|A Chain A, Structure Of S. Nuclease Stabilizing Mu... 25 7.0
pdb|2ENB| Staphylococcal Nuclease (E.C.3.1.31.1) Mutation... 25 7.0
pdb|1KDA| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant W... 25 7.0
pdb|1EY8|A Chain A, Structure Of S. Nuclease Stabilizing Tr... 25 7.0
pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae >gi|... 25 9.1
pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate... 25 9.1
pdb|1CQ3|A Chain A, Structure Of A Soluble Secreted Chemoki... 25 9.1
pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In... 25 9.1
pdb|2SNM| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant W... 25 9.1
>pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T72k, S144k, S228k,
S303k)
Length = 319
Score = 29.6 bits (65), Expect = 0.37
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 90 NIPKSIRKNFIAAHPMCGTEFYGP-KASVKGLYENALVILCDLED 133
NI K RKNF T Y K KG Y+ AL++LC ED
Sbjct: 281 NIRKEFRKNF-------ATSLYSMIKGDTKGDYKKALLLLCGGED 318
>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
pdb|1A8A| Rat Annexin V Complexed With Glycerophosphoserine
pdb|1A8B| Rat Annexin V Complexed With Glycerophosphoethanolamine
Length = 318
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 90 NIPKSIRKNFIAAHPMCGTEFYGP-KASVKGLYENALVILCDLED 133
NI K RKNF T Y K G Y+ AL++LC ED
Sbjct: 280 NIRKEFRKNF-------ATSLYSMIKGDTSGDYKKALLLLCGGED 317
>pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant
Length = 319
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 90 NIPKSIRKNFIAAHPMCGTEFYGP-KASVKGLYENALVILCDLED 133
NI K RKNF T Y K G Y+ AL++LC ED
Sbjct: 281 NIRKEFRKNF-------ATSLYSMIKGDTSGDYKKALLLLCGGED 318
>pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant
Length = 319
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 90 NIPKSIRKNFIAAHPMCGTEFYGP-KASVKGLYENALVILCDLED 133
NI K RKNF T Y K G Y+ AL++LC ED
Sbjct: 281 NIRKEFRKNF-------ATSLYSMIKGDTSGDYKKALLLLCGGED 318
>pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant
Length = 319
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 90 NIPKSIRKNFIAAHPMCGTEFYGP-KASVKGLYENALVILCDLED 133
NI K RKNF T Y K G Y+ AL++LC ED
Sbjct: 281 NIRKEFRKNF-------ATSLYSMIKGDTSGDYKKALLLLCGGED 318
>pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant
Length = 319
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 90 NIPKSIRKNFIAAHPMCGTEFYGP-KASVKGLYENALVILCDLED 133
NI K RKNF T Y K G Y+ AL++LC ED
Sbjct: 281 NIRKEFRKNF-------ATSLYSMIKGDTSGDYKKALLLLCGGED 318
>pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k, S144k, S228k)
Length = 319
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 90 NIPKSIRKNFIAAHPMCGTEFYGP-KASVKGLYENALVILCDLED 133
NI K RKNF T Y K G Y+ AL++LC ED
Sbjct: 281 NIRKEFRKNF-------ATSLYSMIKGDTSGDYKKALLLLCGGED 318
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 27.7 bits (60), Expect = 1.4
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 24/129 (18%)
Query: 80 LGGAKAQIIRNIPKSIRKNFIAAHPMCGTEFYGPKASVK-----GLYENALVILCDLEDS 134
+GG + I I IRKN A H + G + GP ++ K G Y+ + ++
Sbjct: 267 MGGPREAIWHAI---IRKNHGATHFIVGRDHAGPGSNSKGEDFYGPYDAQHAVEKYKDEL 323
Query: 135 GTEQVEIAKEIFL--------------GVKARLIKMKSNEHDTHVAYISHLPHVLSYALA 180
G E VE +L GVK + + E + +H+P SY
Sbjct: 324 GIEVVEFQMVTYLPDTDEYRPVDQVPAGVKT--LNISGTELRRRLRSGAHIPEWFSYPEV 381
Query: 181 NSVLKQNDP 189
+L++++P
Sbjct: 382 VKILRESNP 390
>pdb|1HRB| Hemerythrin B
Length = 113
Score = 27.3 bits (59), Expect = 1.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 197 GGGFRDMSRLSKSSPLMWKDIFKQNRDNVLEAIKKCEKEIVQAKAWIENN 246
G F + L ++S + D K+ D + A+ + ++ AKAW+ N+
Sbjct: 52 GKHFLNQEVLMEASQYQFYDEHKKEHDGFINALDNWKGDVKWAKAWLVNH 101
>pdb|1J5P|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm1643) From Thermotoga Maritima At 1.9 A Resolution
Length = 253
Score = 26.6 bits (57), Expect = 3.1
Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 37/223 (16%)
Query: 3 GSLGLALQEWGRFKSVIGYDHNAL---------HAKLALTLGLVDECVGFEKILECDVIF 53
G++G L E G F+ + YD + ++ + V EC E + E +
Sbjct: 21 GNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQI 80
Query: 54 LAIPVEGIIGCLKKMT-SIKKSATIIDLGGAKAQI---------------IRNIPKSIRK 97
L PV II + + +L + A++ I++ K++R
Sbjct: 81 LKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIKDFVKNVRI 140
Query: 98 NFIAAHPMCGTEFYGPKASVKGLYENALVILCDLEDSGTEQVEIAKEI-----FLGVKAR 152
I G + G +G E A + + +A I F VK
Sbjct: 141 ETIKPPKSLGLDLKGKTVVFEGSVEEASKLF-------PRNINVASTIGLIVGFEKVKVT 193
Query: 153 LIKMKSNEHDTHVAYISHLPHVLSYALANSVLKQNDPEMILSL 195
++ + +H+ H+ IS + + N +N +L++
Sbjct: 194 IVADPAMDHNIHIVRISSAIGNYEFKIENIPSPENPKTSMLTV 236
>pdb|1H2H|A Chain A, Crystal Structure Of Tm1643
Length = 241
Score = 26.2 bits (56), Expect = 4.1
Identities = 38/197 (19%), Positives = 69/197 (34%), Gaps = 37/197 (18%)
Query: 3 GSLGLALQEWGRFKSVIGYDHNAL---------HAKLALTLGLVDECVGFEKILECDVIF 53
G++G L E G F+ + YD + ++ + V EC E + E +
Sbjct: 9 GNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQI 68
Query: 54 LAIPVEGIIGCLKKMT-SIKKSATIIDLGGAKAQI---------------IRNIPKSIRK 97
L PV II + + +L + A++ I++ K++R
Sbjct: 69 LKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIKDFVKNVRI 128
Query: 98 NFIAAHPMCGTEFYGPKASVKGLYENALVILCDLEDSGTEQVEIAKEI-----FLGVKAR 152
I G + G +G E A + + +A I F VK
Sbjct: 129 ETIKPPKSLGLDLKGKTVVFEGSVEEASKLF-------PRNINVASTIGLIVGFEKVKVT 181
Query: 153 LIKMKSNEHDTHVAYIS 169
++ + +H+ H+ IS
Sbjct: 182 IVADPAXDHNIHIVRIS 198
>pdb|1BC9| Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average Structure
Length = 200
Score = 25.8 bits (55), Expect = 5.4
Identities = 13/60 (21%), Positives = 23/60 (37%)
Query: 105 MCGTEFYGPKASVKGLYENALVILCDLEDSGTEQVEIAKEIFLGVKARLIKMKSNEHDTH 164
M T + P K E + + + D G E+ + ++ +K K+ EH H
Sbjct: 139 MLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPELEHHHH 198
>pdb|1SYB| Staphylococcal Nuclease (E.C.3.1.31.1) With Residues 27 - 31
(Tyr-Lys-Gly-Gln-Pro) Replaced With Residues 160 - 165
Of Concanavalin A (Ser-Ser-Asn-Gly-Ser-Pro) Complexed
With 2'-Deoxy-3'-5'-Diphosphothymidine And Calcium
Length = 150
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 47 HPKKGVEKYGPEASAFTKKMVENA 70
>pdb|1KDB| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Lys 116
Replaced By Glu (K116e)
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|2SOB| Sn-Ob, Ob-Fold Sub-Domain Of Staphylococcal Nuclease, Nmr, 10
Structures
Length = 103
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMLENA 69
>pdb|1STA| Staphylococcal Nuclease (E.C.3.1.31.1) Double Insertion Mutant
With Two Glycine Residues Inserted In The First Beta
Strand Between Pro 11 And Ala 12 (Ins(P11-Gg)) Complexed
With Calcium And The Inhibitor Thymidine
3',5'-Diphosphate
Length = 151
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 48 HPKKGVEKYGPEASAFTKKMVENA 71
>pdb|1SNM| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant (Glu 43 Replaced By
Asp) (E43D) Complex With A Calcium Ion And 3-Prime,
5-Prime-Deoxythymidine Bisphosphate
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1SND|A Chain A, Staphylococcal Nuclease Dimer Containing A Deletion Of
Residues 114-119 Complexed With Calcium Chloride And The
Competitive Inhibitor Deoxythymidine-3',5'-Diphosphate
pdb|1SND|B Chain B, Staphylococcal Nuclease Dimer Containing A Deletion Of
Residues 114-119 Complexed With Calcium Chloride And The
Competitive Inhibitor Deoxythymidine-3',5'-Diphosphate
Length = 143
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1EY7|A Chain A, Structure Of S. Nuclease Stabilizing Mutant S128a
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|2SNS| Staphylococcal Nuclease (E.C.3.1.33.1) Complex With
2(Prime)-Deoxy-3(Prime)-5(Prime)-Diphosphothymidine
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1EY9|A Chain A, Structure Of S. Nuclease Stabilizing Quadruple Mutant
T41iP117GH124LS128A
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1KAB| Staphylococcal Nuclease (E.C.3.1.33.1) Mutant With Lys 116
Replaced By Gly (K116g)
Length = 136
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 41 HPKKGVEKYGPEASAFTKKMVENA 64
>pdb|1SNP| Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1KAA| Staphylococcal Nuclease (E.C.3.1.33.1) Mutant With Lys 116
Replaced By Ala (K116a)
Length = 136
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 41 HPKKGVEKYGPEASAFTKKMVENA 64
>pdb|1STB| Staphylococcal Nuclease (E.C.3.1.31.1) Insertion Mutant With Leu
Inserted At The End Of The Third Beta-Strand Between Leu
36 And Leu 37 (Ins(L36-L)) Complexed With Thymidine
3',5'-Diphosphate And Calcium
Length = 150
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 47 HPKKGVEKYGPEASAFTKKMVENA 70
>pdb|1SYD| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Pro 117
Replaced By Gly (P117g) Complexed With
2'-Deoxy-3'-5'-Diphosphothymidine And Calcium
pdb|1SYC| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Pro 117
Replaced By Gly (P117g)
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1SYF| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Pro 117
Replaced By Thr (P117t) Complexed With
2'-Deoxy-3'-5'-Diphosphothymidine And Calcium
pdb|1SYE| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Pro 117
Replaced By Thr (P117t)
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1NSN|S Chain S, Immunoglobulin, Staphylococcal Nuclease Mol_id: 1;
Molecule: Igg Fab (Igg1, Kappa); Chain: L, H; Domain:
Fragment N10; Synonym: N10 Fab Immunoglobulin; Mol_id:
2; Molecule: Staphylococcal Nuclease; Chain: S; Synonym:
Staphylococcal Nuclease Ribonucleate,
(Deoxyribonucleate)-3'-Nucleotidohydrolase; Ec:
3.1.31.1; Engineered: Yes
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1EYA|A Chain A, Structure Of S. Nuclease Stabilizing Quintuple Mutant
T33vT41IP117GH124LS128A
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1ENC| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Asp 21 Replaced
By Glu (D21e) Complexed With A Calcium Ion And The
Inhibitor Thymidine 3',5'-Diphosphate
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1JOK|A Chain A, Averaged Structure For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOQ|A Chain A, Ensemble Structures For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOO|A Chain A, Averaged Structure For Unligated Staphylococcal Nuclease-
H124l
pdb|1JOR|A Chain A, Ensemble Structures For Unligated Staphylococcal Nuclease-
H124l
pdb|1SNO| Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1EY0|A Chain A, Structure Of Wild-Type S. Nuclease At 1.6 A Resolution
pdb|1EYD|A Chain A, Structure Of Wild-Type S. Nuclease At 1.7 A Resolution
pdb|1STN| Staphylococcal Nuclease (E.C.3.1.31.1)
pdb|1STG| Staphylococcal Nuclease (E.C.3.1.31.1)
pdb|1STH| Staphylococcal Nuclease (E.C.3.1.31.1) Complexed With Co(Ii) Ion
And Thymidine 3',5'-Bisphosphate (Pdtp)
pdb|1SNC| Staphylococcal Nuclease (E.C.3.1.31.1) Complex With A Calcium Ion
And 3-Prime, 5-Prime-Deoxythymidine Bisphosphate
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1SYG| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Pro 117
Replaced By Ala (P117a)
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1STY| Staphylococcal Nuclease (E.C.3.1.31.1) Insertion Mutant With
Glycine Residue Inserted In An Alpha Helix, Between
Arg126 And Lys127 (126g127) Complex With Calcium And
Inhibitor Thymidine 3',5'-Bisphosphate)
Length = 150
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1KDC| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Lys 116
Replaced By Asn (K116n)
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1NUC| Staphylococcal Nuclease, V23c Variant
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1EY5|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
pdb|1EZ8|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|3NUC| Staphlococcal Nuclease, 1-N-Propane Thiol Disulfide To V23c
Variant
pdb|1A2T| Staphylococcal Nuclease, B-Mercaptoethanol Disulfide To V23c
Variant
pdb|1A2U| Staphylococcal Nuclease, V23c Variant, Complex With 1-N-Butane
Thiol And 3',5'-Thymidine Diphosphate
pdb|2NUC| Staphlococcal Nuclease, Ethane Thiol Disulfide To V23c Variant
pdb|1A3U| Staphylococcal Nuclease, Cyclohexane Thiol Disulfide To V23c
Variant
pdb|1A3T| Staphylococcal Nuclease, V23c Variant, Complex With 2-Fluoroethane
Thiol And 3',5'-Thymidine Diphosphate
pdb|1AEX| Staphylococcal Nuclease, Methane Thiol Disulfide To V23c Variant
pdb|5NUC| Staphylococcal Nuclease, 1-N-Pentane Thiol Disulfide To V23c
Variant
pdb|1A3V| Staphylococcal Nuclease, Cyclopentane Thiol Disulfide To V23c
Variant
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1EY6|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T41i
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|2ENB| Staphylococcal Nuclease (E.C.3.1.31.1) Mutation With Asp 21
Replaced By Glu (D21e) Complexed With The Inhibitor
Thymidine 3',5'-Diphosphate
pdb|1ENA| Staphylococcal Nuclease (E.C.3.1.31.1) Mutation With Asp 21
Replaced By Glu (D21e) Complexed With A Calcium Ion
Length = 135
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 40 HPKKGVEKYGPEASAFTKKMVENA 63
>pdb|1KDA| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Lys 116
Replaced By Asp (K116d)
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1EY8|A Chain A, Structure Of S. Nuclease Stabilizing Triple Mutant
P117gH124LS128A
Length = 149
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMVENA 69
>pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae
pdb|1G8G|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8G|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8H|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
pdb|1G8H|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
Length = 511
Score = 25.0 bits (53), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 95 IRKNFIAAHPMCGTEFYGPKASVKGL 120
IRKN+ A+H + G + GP + KG+
Sbjct: 277 IRKNYGASHFIVGRDHAGPGKNSKGV 302
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 25.0 bits (53), Expect = 9.1
Identities = 12/39 (30%), Positives = 20/39 (50%)
Query: 221 NRDNVLEAIKKCEKEIVQAKAWIENNDYESLAEWMAQAN 259
+RD VL +K+ + I + W ND+ AE+ + N
Sbjct: 216 DRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN 254
>pdb|1CQ3|A Chain A, Structure Of A Soluble Secreted Chemokine Inhibitor, Vcci,
From Cowpox Virus
pdb|1CQ3|B Chain B, Structure Of A Soluble Secreted Chemokine Inhibitor, Vcci,
From Cowpox Virus
Length = 233
Score = 25.0 bits (53), Expect = 9.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 204 SRLSKSSPLMWKDIFKQNRDNVLEAIKKCEKEI 236
+RLS SP KD R+ L IK CE I
Sbjct: 105 ARLSSVSPGQGKDSPAITREEALSMIKDCEMSI 137
>pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Thiosulfate
pdb|1JEE|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JEE|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JED|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JED|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With Adp
Length = 510
Score = 25.0 bits (53), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 95 IRKNFIAAHPMCGTEFYGPKASVKGL 120
IRKN+ A+H + G + GP + KG+
Sbjct: 276 IRKNYGASHFIVGRDHAGPGKNSKGV 301
>pdb|2SNM| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Val 66 Replaced
By Lys (V66k)
Length = 149
Score = 25.0 bits (53), Expect = 9.1
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 103 HPMCGTEFYGPKAS--VKGLYENA 124
HP G E YGP+AS K + ENA
Sbjct: 46 HPKKGVEKYGPEASAFTKKMKENA 69
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,497,273
Number of Sequences: 13198
Number of extensions: 56926
Number of successful extensions: 164
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 47
length of query: 265
length of database: 2,899,336
effective HSP length: 87
effective length of query: 178
effective length of database: 1,751,110
effective search space: 311697580
effective search space used: 311697580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)