BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645992|ref|NP_208173.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1XYN| Molecule: Endo-1,4-Beta-Xylanase I; Synonym: Xy... 27 0.98
pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk ... 27 0.98
pdb|1JKW| Structure Of Cyclin Mcs2 26 1.7
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus... 25 2.2
pdb|1B89|A Chain A, Clathrin Heavy Chain Proximal Leg Segme... 25 3.7
pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core 24 6.3
>pdb|1XYN| Molecule: Endo-1,4-Beta-Xylanase I; Synonym: Xyni; Ec: 3.2.1.8
Length = 178
Score = 26.6 bits (57), Expect = 0.98
Identities = 17/54 (31%), Positives = 24/54 (43%), Gaps = 2/54 (3%)
Query: 40 IIKQGYKTFSSKNIAIPSGFWYHYDTSLTDSYENAKSEC--FYIPNDNQNYPLQ 91
++ G+ T SS I F + T L Y + + +YI DN NYP Q
Sbjct: 35 VVGVGWTTGSSAPINFGGSFSVNSGTGLLSVYGWSTNPLVEYYIMEDNHNYPAQ 88
>pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase
Length = 333
Score = 26.6 bits (57), Expect = 0.98
Identities = 13/40 (32%), Positives = 22/40 (54%)
Query: 16 VLLVEKEGRNLARKYHQVLVEELTIIKQGYKTFSSKNIAI 55
+L + K RNL +KY EE+ ++KQ + S +A+
Sbjct: 258 LLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELAL 297
>pdb|1JKW| Structure Of Cyclin Mcs2
Length = 323
Score = 25.8 bits (55), Expect = 1.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 16 VLLVEKEGRNLARKYHQVLVEELTIIKQGYKTFSSKNIAI 55
+L + K RNL +KY EE+ ++KQ S +A+
Sbjct: 248 LLDIMKSMRNLVKKYEPPRSEEVAVLKQKLDRCHSAELAL 287
>pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
Length = 686
Score = 25.4 bits (54), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 44 GYKTFSSKNIAIPSGFWYHYDTSLTDSYENA-KSECFYIPN 83
GY T K I G W +DT + D+++N K ++PN
Sbjct: 91 GYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPN 131
>pdb|1B89|A Chain A, Clathrin Heavy Chain Proximal Leg Segment (Bovine)
Length = 449
Score = 24.6 bits (52), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 90 LQEMRRDCKEYERVEKQVVFKNNKNNELNELPKYLN 125
LQ R+ +E VE +++F K N L EL +++N
Sbjct: 84 LQMARKKARE-SYVETELIFALAKTNRLAELEEFIN 118
>pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core
Length = 591
Score = 23.9 bits (50), Expect = 6.3
Identities = 11/21 (52%), Positives = 12/21 (56%)
Query: 109 FKNNKNNELNELPKYLNNAKK 129
F NK E+ EL LNN KK
Sbjct: 7 FTTNKKGEIFELKAELNNEKK 27
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 786,721
Number of Sequences: 13198
Number of extensions: 29703
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 2,899,336
effective HSP length: 78
effective length of query: 52
effective length of database: 1,869,892
effective search space: 97234384
effective search space used: 97234384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)