BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644769|ref|NP_206939.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(242 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Pept... 28 0.73
pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) ... 27 1.6
pdb|1G63|B Chain B, Peptidyl-Cysteine Decarboxylase Epid >g... 27 2.8
pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant... 26 4.7
pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 C... 25 6.2
pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex 25 6.2
>pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|D Chain D, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|G Chain G, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|L Chain L, Epid H67n Complexed With Substrate Peptide Dsytc
Length = 181
Score = 28.5 bits (62), Expect = 0.73
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 52 YEETKKVVLYNIKLYSNNDYPIILPSGSCT 81
Y+E K +L NI + N++Y ++LP+ + T
Sbjct: 57 YDEIKDPLLNNINIVENHEYILVLPASANT 86
>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
pdb|1E5D|B Chain B, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
Length = 402
Score = 27.3 bits (59), Expect = 1.6
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 99 NMVKDFCSRVYELSEFLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLI 154
N V F ++ +E + + L + D+G +K+ W CH ++ I A +I
Sbjct: 253 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVI 308
>pdb|1G63|B Chain B, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|F Chain F, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|A Chain A, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|G Chain G, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|H Chain H, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|I Chain I, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|J Chain J, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|L Chain L, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|C Chain C, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|E Chain E, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|K Chain K, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|D Chain D, Peptidyl-Cysteine Decarboxylase Epid
Length = 181
Score = 26.6 bits (57), Expect = 2.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 52 YEETKKVVLYNIKLYSNNDYPIILPSGSCT 81
Y+E K +L +I + N++Y ++LP+ + T
Sbjct: 57 YDEIKDPLLNHINIVENHEYILVLPASANT 86
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 25.8 bits (55), Expect = 4.7
Identities = 17/66 (25%), Positives = 37/66 (55%), Gaps = 8/66 (12%)
Query: 66 YSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVKDFCSRVYELSEFLDKKLQVKYED 125
++N+DY I + + + M+ ++ F A N+ K + +Y ++ +D+KL+++
Sbjct: 409 FNNDDYAI---AAAVSPMIVGKQMQFFGARA--NLAK---TMLYAINGGVDEKLKMQVGP 460
Query: 126 KGEPLK 131
K EP+K
Sbjct: 461 KSEPIK 466
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 25.4 bits (54), Expect = 6.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 48 NSGYYEETKKVVLYNIKLYSNNDYP 72
+S +E TKK VL ++ + +ND+P
Sbjct: 106 SSSNFEATKKSVLKQVQDFEDNDHP 130
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
Length = 431
Score = 25.4 bits (54), Expect = 6.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 48 NSGYYEETKKVVLYNIKLYSNNDYP 72
+S +E TKK VL ++ + +ND+P
Sbjct: 107 SSSNFEATKKSVLKQVQDFEDNDHP 131
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,333,567
Number of Sequences: 13198
Number of extensions: 54322
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 8
length of query: 242
length of database: 2,899,336
effective HSP length: 86
effective length of query: 156
effective length of database: 1,764,308
effective search space: 275232048
effective search space used: 275232048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)