BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645993|ref|NP_208174.1| restriction modification
system S subunit [Helicobacter pylori 26695]
(160 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Mu... 30 0.17
pdb|1F1F|A Chain A, Crystal Structure Of Cytochrome C6 From... 27 1.1
pdb|1KIB|A Chain A, Cytochrome C6 From Arthrospira Maxima: ... 26 2.5
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 25 3.2
pdb|1WER| Ras-Gtpase-Activating Domain Of Human P120gap >... 25 4.2
pdb|1SVA|1 Chain 1, Simian Virus 40 >gi|1633508|pdb|1SVA|2 ... 25 5.5
>pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|1J4B|A Chain A, Recombinant Mouse-Muscle Adenylosuccinate Synthetase
Length = 457
Score = 29.6 bits (65), Expect = 0.17
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 78 IAIANILSDLDRYLYNLDALILKKESVKKALSFELLSQRKRLKGF 122
+ I ++LSD D + L + +S+ L ++ Q KRLKGF
Sbjct: 180 LRICDLLSDFDEFSARFKNLAHQHQSMFPTLEIDVEGQLKRLKGF 224
>pdb|1F1F|A Chain A, Crystal Structure Of Cytochrome C6 From Arthrospira Maxima
Length = 89
Score = 26.9 bits (58), Expect = 1.1
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 85 SDLDRYLYNLDALILKKESVKKALSFELLSQRKRLKGFNQAWQRVRLGDIANYLMNPSK 143
SDL +YL D + A+++++ + + + GFN +++ D+A Y+++ ++
Sbjct: 34 SDLAKYLKGFD------DDAVAAVAYQVTNGKNAMPGFNGRLSPLQIEDVAAYVVDQAE 86
>pdb|1KIB|A Chain A, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
Subunits In The Form Of An Oblate Shell
pdb|1KIB|B Chain B, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
Subunits In The Form Of An Oblate Shell
pdb|1KIB|C Chain C, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
Subunits In The Form Of An Oblate Shell
pdb|1KIB|D Chain D, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
Subunits In The Form Of An Oblate Shell
pdb|1KIB|E Chain E, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
Subunits In The Form Of An Oblate Shell
pdb|1KIB|F Chain F, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
Subunits In The Form Of An Oblate Shell
pdb|1KIB|G Chain G, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
Subunits In The Form Of An Oblate Shell
pdb|1KIB|H Chain H, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
Subunits In The Form Of An Oblate Shell
Length = 89
Score = 25.8 bits (55), Expect = 2.5
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 85 SDLDRYLYNLDALILKKESVKKALSFELLSQRKRLKGFNQAWQRVRLGDIANYLMNPSK 143
SDL +YL D + A+++++ + + + GFN ++ D+A Y+++ ++
Sbjct: 34 SDLAKYLKGFD------DDAVAAVAYQVTNGKNAMPGFNGRLSPKQIEDVAAYVVDQAE 86
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 25.4 bits (54), Expect = 3.2
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 61 PNKIKNLLIPLPPLNEQIAIANILSDLDR 89
P + K LL+ LP + AN+ +DL+R
Sbjct: 488 PERTKVLLVTLPETTPVLEAANLQADLER 516
>pdb|1WER| Ras-Gtpase-Activating Domain Of Human P120gap
pdb|1WQ1|G Chain G, Ras-Rasgap Complex
Length = 334
Score = 25.0 bits (53), Expect = 4.2
Identities = 20/61 (32%), Positives = 32/61 (51%), Gaps = 11/61 (18%)
Query: 43 LKNKLLKLASGSTFLEVSPNKIK----------NLLIPLPPLNEQIAIAN-ILSDLDRYL 91
LK+ +LK+ E+SP+K++ +LL L L E+I +A+ IL RY+
Sbjct: 101 LKDSILKIMESKQSCELSPSKLEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYI 160
Query: 92 Y 92
Y
Sbjct: 161 Y 161
>pdb|1SVA|1 Chain 1, Simian Virus 40
pdb|1SVA|2 Chain 2, Simian Virus 40
pdb|1SVA|5 Chain 5, Simian Virus 40
pdb|1SVA|3 Chain 3, Simian Virus 40
pdb|1SVA|6 Chain 6, Simian Virus 40
pdb|1SVA|4 Chain 4, Simian Virus 40
Length = 361
Score = 24.6 bits (52), Expect = 5.5
Identities = 15/40 (37%), Positives = 20/40 (49%), Gaps = 5/40 (12%)
Query: 50 LASGSTFLEVSPNK-----IKNLLIPLPPLNEQIAIANIL 84
LA+ F + SP+K IPLP +NE + NIL
Sbjct: 69 LAAEKQFTDDSPDKEQLPCYSVARIPLPNINEDLTCGNIL 108
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.140 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 797,406
Number of Sequences: 13198
Number of extensions: 28206
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 6
length of query: 160
length of database: 2,899,336
effective HSP length: 81
effective length of query: 79
effective length of database: 1,830,298
effective search space: 144593542
effective search space used: 144593542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)