BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645994|ref|NP_208175.1| hypothetical protein
[Helicobacter pylori 26695]
         (68 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1ESL|    E-Selectin (Lectin And Egf Domains, Residues 1 ...    23  6.2
pdb|1H3P|L  Chain L, Structural Characterisation Of A Monocl...    23  8.1

>pdb|1ESL|   E-Selectin (Lectin And Egf Domains, Residues 1 - 157) (Formerly
           Known As Elam-1)
          Length = 162

 Score = 23.1 bits (48), Expect = 6.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 33  SCLKCEQVLNC 43
           S LKCEQ++NC
Sbjct: 149 SGLKCEQIVNC 159



>pdb|1H3P|L Chain L, Structural Characterisation Of A Monoclonal Antibody
          Specific For The Pres1 Region Of The Hepatitis B Virus
          Length = 240

 Score = 22.7 bits (47), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 28 EKQVTSCLKCEQVLNCKIRNSYV 50
          EK   SC   + +LN + R SY+
Sbjct: 17 EKVTMSCRSSQSLLNTRTRKSYL 39



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.317    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,616
Number of Sequences: 13198
Number of extensions: 9622
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 2,899,336
effective HSP length: 44
effective length of query: 24
effective length of database: 2,318,624
effective search space: 55646976
effective search space used: 55646976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)