BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645998|ref|NP_208179.1| hypothetical protein
[Helicobacter pylori 26695]
(149 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2NUL| Peptidylprolyl Isomerase From E. Coli 30 0.12
pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-A... 30 0.12
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 29 0.20
pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa 28 0.58
pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Rec... 27 0.98
pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And N... 27 1.3
pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Co... 26 1.7
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 26 2.2
pdb|2VSG|A Chain A, A Structural Motif In The Variant Surfa... 26 2.2
pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clath... 26 2.2
pdb|1GW5|M Chain M, Ap2 Clathrin Adaptor Core 26 2.2
pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adapt... 26 2.2
pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adapt... 26 2.2
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adapt... 26 2.2
pdb|1J96|A Chain A, Human 3alpha-Hsd Type 3 In Ternary Comp... 25 2.9
pdb|1OIS| Yeast Dna Topoisomerase I, N-Terminal Fragment 25 2.9
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 25 2.9
pdb|1IHI|A Chain A, Crystal Structure Of Human Type Iii 3-A... 25 2.9
pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And N... 25 3.7
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 25 3.7
pdb|1JEZ|A Chain A, The Structure Of Xylose Reductase, A Di... 25 4.9
pdb|1NOY|A Chain A, T4 Dna Polymerase Fragment (Residues 1-... 24 6.4
pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome... 24 6.4
pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s ... 24 8.3
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 24 8.3
>pdb|2NUL| Peptidylprolyl Isomerase From E. Coli
Length = 164
Score = 30.0 bits (66), Expect = 0.12
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 73 EKKSQENFQKFLEFCKQQ-------NRVLKKFDSTNFSFE--CDEPATKKPLENPTNNIL 123
+ K+ E + FL++C++ +RV+ F FE + ATK+P++N NN L
Sbjct: 17 DDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGL 76
Query: 124 NS 125
+
Sbjct: 77 KN 78
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 30.0 bits (66), Expect = 0.12
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 73 EKKSQENFQKFLEFCKQQ-------NRVLKKFDSTNFSFE--CDEPATKKPLENPTNNIL 123
+ K+ E + FL++C++ +RV+ F FE + ATK+P++N NN L
Sbjct: 17 DDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGL 76
Query: 124 NS 125
+
Sbjct: 77 KN 78
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 29.3 bits (64), Expect = 0.20
Identities = 22/82 (26%), Positives = 41/82 (49%), Gaps = 8/82 (9%)
Query: 9 KIGKQLDELEIEDSLCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQ 68
K+ +Q +E++ +D + L+ + ++ + LKE E K T++ EKNL +E+ Q
Sbjct: 851 KVTRQEEEMQAKD-------EELQRTKERQQKAEAELKELEQKH-TQLCEEKNLLQEKLQ 902
Query: 69 KEEQEKKSQENFQKFLEFCKQQ 90
E + E + L KQ+
Sbjct: 903 AETELYAEAEEMRVRLAAKKQE 924
>pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa
Length = 303
Score = 27.7 bits (60), Expect = 0.58
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Query: 30 SLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQK 82
+LEN I F K NI + + + + EKNLKE + ++ +K+S++ F K
Sbjct: 137 NLENGIIFAK--NIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNK 187
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 103
Score = 26.9 bits (58), Expect = 0.98
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 36 KFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEK 74
+FKK +G+ V D++ L ++ L EE R+K +E+
Sbjct: 62 RFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREE 100
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
Length = 416
Score = 26.6 bits (57), Expect = 1.3
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 36 KFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQE----------------- 78
+F++++ + L E E +R E + + KE+ RQ + K S
Sbjct: 165 EFEEINRVLLGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNP 224
Query: 79 ----NFQKFLEFCKQQNRVLKKFDSTNFSFECDEPATKKP 114
NF KF E ++N L+ D S + +E A P
Sbjct: 225 IYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLP 264
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Bindin
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Bindin
Length = 55
Score = 26.2 bits (56), Expect = 1.7
Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 3/44 (6%)
Query: 51 KRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRVL 94
KR+ +++ + E R+K+++ KS EN LE QN+ L
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLE---NQNKTL 41
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf):
Wild- Type Lf Complexed With The N-Terminal Sequence Of
Mapkk2
Length = 776
Score = 25.8 bits (55), Expect = 2.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 58 REKNLKEERRQKEEQEKKSQENFQKFLE 85
+EKN E +R+ EE+ K +E+ ++ ++
Sbjct: 14 KEKNKDENKRKDEERNKTQEEHLKEIMK 41
>pdb|2VSG|A Chain A, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
pdb|2VSG|B Chain B, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
Length = 358
Score = 25.8 bits (55), Expect = 2.2
Identities = 23/97 (23%), Positives = 42/97 (42%), Gaps = 13/97 (13%)
Query: 11 GKQLDELEIEDSLCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILRE----------- 59
G + + E+E L+ + + IKF+ ++ G K ++ K D + E
Sbjct: 256 GPKPGQTEVETMKLLAQKTAALDSIKFQLAASTGKKTSDYKEDENLKTEYFGKTESNIEA 315
Query: 60 --KNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRVL 94
+KEE+ + + E S+E+ L +Q RVL
Sbjct: 316 LWNKVKEEKVKGADPEDPSKESKISDLNTEEQLQRVL 352
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 25.8 bits (55), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 28 FKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERR 67
+K+ EN I +K G+KE+++ + E+L + K+ R
Sbjct: 223 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWAR 262
>pdb|1GW5|M Chain M, Ap2 Clathrin Adaptor Core
Length = 435
Score = 25.8 bits (55), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 28 FKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERR 67
+K+ EN I +K G+KE+++ + E+L + K+ R
Sbjct: 344 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWAR 383
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 25.8 bits (55), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 28 FKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERR 67
+K+ EN I +K G+KE+++ + E+L + K+ R
Sbjct: 230 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWAR 269
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 25.8 bits (55), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 28 FKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERR 67
+K+ EN I +K G+KE+++ + E+L + K+ R
Sbjct: 197 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWAR 236
>pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
Length = 285
Score = 25.8 bits (55), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 28 FKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERR 67
+K+ EN I +K G+KE+++ + E+L + K+ R
Sbjct: 194 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWAR 233
>pdb|1J96|A Chain A, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And
Testosterone
pdb|1J96|B Chain B, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And
Testosterone
Length = 323
Score = 25.4 bits (54), Expect = 2.9
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 23 LCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQK 82
LC + ++++E C +IG+ + IL + LK + + E N +K
Sbjct: 144 LCAT-WEAMEKCKDAGLAKSIGVSNFNHRLLEMILNKPGLKY-KPVCNQVECHPYFNQRK 201
Query: 83 FLEFCKQQNRVLKKFDSTNFSFE--CDEPATKKPLENPTNNILNSNHQNT 130
L+FCK ++ VL + + E +P + LE+P L H+ T
Sbjct: 202 LLDFCKSKDIVLVAYSALGSHREEPWVDPNSPVLLEDPVLCALAKKHKRT 251
>pdb|1OIS| Yeast Dna Topoisomerase I, N-Terminal Fragment
Length = 223
Score = 25.4 bits (54), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 63 KEERRQKEEQEKKS----QENFQKFLEFCKQQNR 92
KE+++Q QEKK +E F++ +FC+ R
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGR 138
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 25.4 bits (54), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 57 LREKNLKEERRQKEEQEKKSQENFQK--FLEFCKQQNRV 93
L+EK K R KE+ E K +E +K F E K RV
Sbjct: 86 LKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRV 124
>pdb|1IHI|A Chain A, Crystal Structure Of Human Type Iii 3-Alpha-Hydroxysteroid
DehydrogenaseBILE ACID BINDING PROTEIN (AKR1C2)
COMPLEXED With Nadp+ And Ursodeoxycholate
pdb|1IHI|B Chain B, Crystal Structure Of Human Type Iii 3-Alpha-Hydroxysteroid
DehydrogenaseBILE ACID BINDING PROTEIN (AKR1C2)
COMPLEXED With Nadp+ And Ursodeoxycholate
Length = 323
Score = 25.4 bits (54), Expect = 2.9
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 23 LCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQK 82
LC + ++++E C +IG+ + IL + LK + + E N +K
Sbjct: 144 LCAT-WEAMEKCKDAGLAKSIGVSNFNHRLLEMILNKPGLKY-KPVCNQVECHPYFNQRK 201
Query: 83 FLEFCKQQNRVLKKFDSTNFSFE--CDEPATKKPLENPTNNILNSNHQNT 130
L+FCK ++ VL + + E +P + LE+P L H+ T
Sbjct: 202 LLDFCKSKDIVLVAYSALGSHREEPWVDPNSPVLLEDPVLCALAKKHKRT 251
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 25.0 bits (53), Expect = 3.7
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 36 KFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQE----------------- 78
+F++++ + E E +R E + + KE+ RQ + K S
Sbjct: 165 EFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNP 224
Query: 79 ----NFQKFLEFCKQQNRVLKKFDSTNFSFECDEPATKKP 114
NF KF E ++N L+ D S + +E A P
Sbjct: 225 IYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLP 264
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 25.0 bits (53), Expect = 3.7
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 45 LKEAEVKRDTEILREKNLKEERRQKEEQEKKSQE 78
LK+ EV++ + E+ K ER +KE+++K+ +
Sbjct: 228 LKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
>pdb|1JEZ|A Chain A, The Structure Of Xylose Reductase, A Dimeric Aldo-Keto
Reductase From Candida Tenuis
pdb|1JEZ|B Chain B, The Structure Of Xylose Reductase, A Dimeric Aldo-Keto
Reductase From Candida Tenuis
pdb|1K8C|A Chain A, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1K8C|B Chain B, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1K8C|C Chain C, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1K8C|D Chain D, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
Length = 322
Score = 24.6 bits (52), Expect = 4.9
Identities = 19/80 (23%), Positives = 33/80 (40%), Gaps = 3/80 (3%)
Query: 20 EDSLCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQEN 79
ED L +K+LE + K+ +IG+ ++LR +K Q E Q
Sbjct: 143 EDVPILETWKALEKLVAAGKIKSIGVSNFPGALLLDLLRGATIKPAVLQVEHHPYLQQ-- 200
Query: 80 FQKFLEFCKQQNRVLKKFDS 99
K +EF ++ + + S
Sbjct: 201 -PKLIEFAQKAGVTITAYSS 219
>pdb|1NOY|A Chain A, T4 Dna Polymerase Fragment (Residues 1-388) At 298k
pdb|1NOY|B Chain B, T4 Dna Polymerase Fragment (Residues 1-388) At 298k
pdb|1NOZ|A Chain A, T4 Dna Polymerase Fragment (Residues 1-388) At 110k
pdb|1NOZ|B Chain B, T4 Dna Polymerase Fragment (Residues 1-388) At 110k
Length = 388
Score = 24.3 bits (51), Expect = 6.4
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 7/41 (17%)
Query: 95 KKFDSTNF-SFECDEPA---TKK---PLENPTNNILNSNHQ 128
KKF TN SF + A TKK P + P N + +NHQ
Sbjct: 275 KKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQ 315
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 254
Score = 24.3 bits (51), Expect = 6.4
Identities = 17/67 (25%), Positives = 35/67 (51%), Gaps = 17/67 (25%)
Query: 30 SLENCIKFKKLSNI-----GLKEAE---VKRDTEILREKN---------LKEERRQKEEQ 72
++E C+K S + G K E VK D++I+ + +++E+++++EQ
Sbjct: 187 TVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEKQEQQEQ 246
Query: 73 EKKSQEN 79
+KK + N
Sbjct: 247 DKKKKSN 253
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 23.9 bits (50), Expect = 8.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 59 EKNLKEERRQKEEQEKKSQE 78
EK + E ++KEE EKK Q+
Sbjct: 226 EKYVAEIEKEKEENEKKKQK 245
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 23.9 bits (50), Expect = 8.3
Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 8/68 (11%)
Query: 54 TEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRVLKKFDSTNFSFECDEPATKK 113
TE+ REK + E + KE E ++ +K LE K+ +R+ ST+ + A ++
Sbjct: 114 TELAREKQIAELKALKESSESNIKD-IKKKLE-AKRLDRIQVXXRSTS------DKAAQE 165
Query: 114 PLENPTNN 121
L+ NN
Sbjct: 166 RLKKEINN 173
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 826,363
Number of Sequences: 13198
Number of extensions: 30792
Number of successful extensions: 98
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 27
length of query: 149
length of database: 2,899,336
effective HSP length: 80
effective length of query: 69
effective length of database: 1,843,496
effective search space: 127201224
effective search space used: 127201224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)