BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646000|ref|NP_208181.1| hypothetical protein
[Helicobacter pylori 26695]
(166 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And It... 34 0.008
pdb|1K8A|I Chain I, Co-Crystal Structure Of Carbomycin A Bo... 33 0.017
pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And It... 32 0.029
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 31 0.083
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 31 0.083
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 31 0.083
pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRAN... 30 0.11
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 30 0.14
pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed Wit... 29 0.24
pdb|1BN5| Human Methionine Aminopeptidase 2 >gi|5821858|p... 29 0.24
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 28 0.41
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 27 1.2
pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritim... 27 1.6
pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recyc... 27 1.6
pdb|1GMJ|A Chain A, The Structure Of Bovine If1, The Regula... 26 2.0
pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-Ran ... 26 2.0
pdb|1K8K|G Chain G, Crystal Structure Of Arp23 COMPLEX 26 2.7
pdb|1SIG| Crystal Structure Of A Sigma70 Subunit Fragment... 25 3.5
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 25 6.0
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 25 6.0
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 25 6.0
pdb|1HSL|A Chain A, Histidine-Binding Protein Complexed Wit... 25 6.0
pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase T... 25 6.0
pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprote... 25 6.0
pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In... 24 7.8
pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyos... 24 7.8
pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 I... 24 7.8
pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin... 24 7.8
pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma 24 7.8
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
Length = 246
Score = 34.3 bits (77), Expect = 0.008
Identities = 23/100 (23%), Positives = 42/100 (42%)
Query: 15 MSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNE 74
M EA + +E+D E A K V D + E +D KEI + +SP +
Sbjct: 1 MEEAASQSLEEDFEGQATHTGPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRD 60
Query: 75 LYEEDDRVKRDKERDDALRDKEKAKDDACMVRADDDTIED 114
+ +R+ R E + + +D+ C+ + ++D
Sbjct: 61 DKDSKERMSRKMEIQEYELIHQDKEDEGCLRKYRRQCMQD 100
>pdb|1K8A|I Chain I, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|I Chain I, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|I Chain I, Co-Crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|I Chain I, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|I Chain I, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|G Chain G, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
Length = 348
Score = 33.1 bits (74), Expect = 0.017
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 23 IEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEEDDRV 82
++ D+ N + ++ E D + L +I ++A P + + E D
Sbjct: 245 LQSDRGNAKSLALQAAIEDPEVVPDLVSKADAQVRALASQIDDEEALPEELQGVEADVAT 304
Query: 83 KR--DKERDDALRDKEKAKDDACMVRADDDTIEDDEEYGD 120
+ D + DD + + DDA DDD +DDE+ GD
Sbjct: 305 EEPTDDQDDDTASEDDADADDAAEEADDDD--DDDEDAGD 342
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 32.3 bits (72), Expect = 0.029
Identities = 22/100 (22%), Positives = 41/100 (41%)
Query: 15 MSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNE 74
M EA + +E+D E A K V D + E +D KEI + +SP +
Sbjct: 1 MEEAASQSLEEDFEGQATHTGPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRD 60
Query: 75 LYEEDDRVKRDKERDDALRDKEKAKDDACMVRADDDTIED 114
+ +R+ R + + +D+ C+ + ++D
Sbjct: 61 DKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQD 100
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 30.8 bits (68), Expect = 0.083
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 3/74 (4%)
Query: 4 PLETLDKDK---QAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLD 60
P +T +K Q +A K+ + + +L KAD KV D K + K + L+
Sbjct: 435 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 494
Query: 61 KEIAKDKASPNDNE 74
+++ K + D E
Sbjct: 495 EQLMKLEVQATDRE 508
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 30.8 bits (68), Expect = 0.083
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 3/74 (4%)
Query: 4 PLETLDKDK---QAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLD 60
P +T +K Q +A K+ + + +L KAD KV D K + K + L+
Sbjct: 434 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 493
Query: 61 KEIAKDKASPNDNE 74
+++ K + D E
Sbjct: 494 EQLMKLEVQATDRE 507
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 30.8 bits (68), Expect = 0.083
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 3/74 (4%)
Query: 4 PLETLDKDK---QAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLD 60
P +T +K Q +A K+ + + +L KAD KV D K + K + L+
Sbjct: 463 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 522
Query: 61 KEIAKDKASPNDNE 74
+++ K + D E
Sbjct: 523 EQLMKLEVQATDRE 536
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 30.4 bits (67), Expect = 0.11
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 15 MSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNE 74
M +A + +E+D E A K V D + E +D + KEI + +SP +
Sbjct: 1 MEKAKSQSLEEDFEGQASHTGPKGVINDWRKFKLESEDSDSVAHSKKEILRQMSSPQSRD 60
Query: 75 LYEEDDRVKRD---KERDDALRDKEKAKDDACMVRADDDTIED 114
+ +R R +E + +DKE D+ C+ + ++D
Sbjct: 61 DKDSKERFSRKMSVQEYELIHKDKE---DENCLRKYRRQCMQD 100
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 30.0 bits (66), Expect = 0.14
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 1 MSEPLETLDKDKQAMSEAIKK------DIEKDKENLARVKADKKVKADESEKGYEKDDDK 54
M + L K+++ + E + + E+ +NL ++K + E E +K++ K
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE-K 1053
Query: 55 KAENLDKEIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAKDDACMVRADDDTIED 114
+ L+K K K ++L+E+ ++ A K++ + A + R +D+T +
Sbjct: 1054 SRQELEK--IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111
Query: 115 DEEYGDDDKLRDEILGVMEEL 135
+ +L I + E+L
Sbjct: 1112 NNALKKIRELESHISDLQEDL 1132
Score = 28.5 bits (62), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (49%), Gaps = 5/78 (6%)
Query: 6 ETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAK 65
+ LD ++Q E + + K L +V AD K+K E + +D + K ++++ +
Sbjct: 956 QMLDLEEQLEEE----EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK-ERKLLE 1010
Query: 66 DKASPNDNELYEEDDRVK 83
++ S L EE+++ K
Sbjct: 1011 ERVSDLTTNLAEEEEKAK 1028
>pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 29.3 bits (64), Expect = 0.24
Identities = 21/87 (24%), Positives = 41/87 (46%), Gaps = 2/87 (2%)
Query: 28 ENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAK--DKASPNDNELYEEDDRVKRD 85
E A+ K KK K+ E++ DK++ E+A+ ++++ D E E+D+ D
Sbjct: 32 EEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGD 91
Query: 86 KERDDALRDKEKAKDDACMVRADDDTI 112
+ + K+K K V+ D ++
Sbjct: 92 GDGATGKKKKKKKKKRGPKVQTDPPSV 118
Score = 24.6 bits (52), Expect = 6.0
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 5 LETLDKDKQAMS---EAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDK 61
L+ D+++ A S EA KK K K++ K E +K D+ A L++
Sbjct: 18 LDPDDREEGAASTAEEAAKKKRRKKKKS----KGPSAAGEQEPDKESGASVDEVARQLER 73
Query: 62 EIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAK 99
+DK D+E D + D A K+K K
Sbjct: 74 SALEDKERDEDDE--------DGDGDGDGATGKKKKKK 103
>pdb|1BN5| Human Methionine Aminopeptidase 2
pdb|1BOA| Human Methionine Aminopeptidase 2 Complexed With Angiogenesis
Inhibitor Fumagillin
Length = 478
Score = 29.3 bits (64), Expect = 0.24
Identities = 21/87 (24%), Positives = 41/87 (46%), Gaps = 2/87 (2%)
Query: 28 ENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAK--DKASPNDNELYEEDDRVKRD 85
E A+ K KK K+ E++ DK++ E+A+ ++++ D E E+D+ D
Sbjct: 32 EEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGD 91
Query: 86 KERDDALRDKEKAKDDACMVRADDDTI 112
+ + K+K K V+ D ++
Sbjct: 92 GDGATGKKKKKKKKKRGPKVQTDPPSV 118
Score = 24.6 bits (52), Expect = 6.0
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 5 LETLDKDKQAMS---EAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDK 61
L+ D+++ A S EA KK K K++ K E +K D+ A L++
Sbjct: 18 LDPDDREEGAASTAEEAAKKKRRKKKKS----KGPSAAGEQEPDKESGASVDEVARQLER 73
Query: 62 EIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAK 99
+DK D+E D + D A K+K K
Sbjct: 74 SALEDKERDEDDE--------DGDGDGDGATGKKKKKK 103
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 28.5 bits (62), Expect = 0.41
Identities = 19/62 (30%), Positives = 32/62 (50%), Gaps = 3/62 (4%)
Query: 1 MSEPLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLD 60
+++ LETL ++ + S+ +K+ + KD EN KA K K E + ++ N D
Sbjct: 46 LNKELETLREENRVKSDMLKEKLSKDAEN---HKAYLKSHQVHRHKLKEMEKEEPLLNED 102
Query: 61 KE 62
KE
Sbjct: 103 KE 104
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 26.9 bits (58), Expect = 1.2
Identities = 28/95 (29%), Positives = 40/95 (41%), Gaps = 15/95 (15%)
Query: 17 EAIKKDIEK---DKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDN 73
+AIKK ++ DKEN +ADE+E D K AE+ K++ + S
Sbjct: 2 DAIKKKMQMLKLDKENALD-------RADEAEA-----DKKAAEDRSKQLEDELVSLQKK 49
Query: 74 ELYEEDDRVKRDKERDDALRDKEKAKDDACMVRAD 108
ED+ K + DA E A+ A AD
Sbjct: 50 LKATEDELDKYSEALKDAQEKLELAEKKATDAEAD 84
>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Recycling Factor, Rrf
Length = 185
Score = 26.6 bits (57), Expect = 1.6
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 4 PLETLDKDKQAMSEAIKKDIEKDKENLARVKAD--KKVKADESEKGYEKDDDKKAEN 58
P T ++ ++ + +A K+ +E+ K + ++ + KK+K D+ E +DD K+ EN
Sbjct: 103 PSPTTEQREKWVKKA-KEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLEN 158
>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf)
From Escherichia Coli
Length = 185
Score = 26.6 bits (57), Expect = 1.6
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 4 PLETLDKDKQA-MSEAIKKDIEKDKENLARVKADK--KVKADESEKGYEKDDDKKAEN-- 58
PL L ++++ +++ ++ + E+ + + V+ D KVKA +K +DDD+++++
Sbjct: 101 PLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV 160
Query: 59 ---LDKEIAKDKASPNDNE 74
D I K +A+ D E
Sbjct: 161 QKLTDAAIKKIEAALADKE 179
>pdb|1GMJ|A Chain A, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|B Chain B, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|C Chain C, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|D Chain D, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
Length = 84
Score = 26.2 bits (56), Expect = 2.0
Identities = 19/64 (29%), Positives = 31/64 (47%), Gaps = 1/64 (1%)
Query: 18 AIKKDIEKDKENLARVKADKKVKADESEKGYE-KDDDKKAENLDKEIAKDKASPNDNELY 76
A K + ++E R +A +++ A + K E K+ E L KEI + K S +
Sbjct: 21 AFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80
Query: 77 EEDD 80
E+DD
Sbjct: 81 EDDD 84
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-Ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 26.2 bits (56), Expect = 2.0
Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 10/55 (18%)
Query: 82 VKRDKERDDALRDKEKA------KDDACMVRADDDTIE----DDEEYGDDDKLRD 126
+K D E D+ + D E+ + + D+D IE DD+E DDD + D
Sbjct: 318 LKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISD 372
>pdb|1K8K|G Chain G, Crystal Structure Of Arp23 COMPLEX
Length = 151
Score = 25.8 bits (55), Expect = 2.7
Identities = 17/54 (31%), Positives = 24/54 (43%)
Query: 20 KKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDN 73
K KD+ +K KA++ EK + D + L K I K SP+DN
Sbjct: 67 KSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
>pdb|1SIG| Crystal Structure Of A Sigma70 Subunit Fragment From Escherichia
Coli Rna Polymerase
Length = 339
Score = 25.4 bits (54), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 109 DDTIEDDEEYGDDDKLRDE 127
DD ++DEE GDDD D+
Sbjct: 82 DDDEDEDEEDGDDDSADDD 100
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 24.6 bits (52), Expect = 6.0
Identities = 8/31 (25%), Positives = 19/31 (60%)
Query: 73 NELYEEDDRVKRDKERDDALRDKEKAKDDAC 103
+ L++++ + +K+RDD + ++A D C
Sbjct: 377 DHLFQKELAAQLEKKRDDFCKQNQEASSDRC 407
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 24.6 bits (52), Expect = 6.0
Identities = 16/68 (23%), Positives = 28/68 (40%)
Query: 10 KDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKAS 69
++++ SE K D K L + DK+ + + G + + N KE K +
Sbjct: 758 REQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP 817
Query: 70 PNDNELYE 77
P E+ E
Sbjct: 818 PKGQEVSE 825
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 24.6 bits (52), Expect = 6.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 59 LDKEIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAKDD 101
LDKE A D+A + + +DR K+ ++ +L+ K K +D
Sbjct: 13 LDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTED 55
>pdb|1HSL|A Chain A, Histidine-Binding Protein Complexed With L-Histidine
pdb|1HSL|B Chain B, Histidine-Binding Protein Complexed With L-Histidine
pdb|1HPB|P Chain P, Histidine-Binding Protein (Hisj) Complexed With Histidine
Length = 238
Score = 24.6 bits (52), Expect = 6.0
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 10 KDKQAMSEA-IKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKA 68
+D+ A SE +K+ + KD + D+K+ + G K+D++ E L+K A+ +A
Sbjct: 160 QDEVAASEGFLKQPVGKDYKFGGPAVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRA 219
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 24.6 bits (52), Expect = 6.0
Identities = 21/81 (25%), Positives = 33/81 (39%), Gaps = 10/81 (12%)
Query: 57 ENLDKEIAKDKASPNDNELYEEDDRVKRDKE----------RDDALRDKEKAKDDACMVR 106
E DKE AKD + DN+ E ++ +E RD + K D + +V
Sbjct: 225 EASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVG 284
Query: 107 ADDDTIEDDEEYGDDDKLRDE 127
D + EE +++ DE
Sbjct: 285 IHDVDRAEQEEMEVEERAEDE 305
>pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|B Chain B, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|C Chain C, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|D Chain D, Crystal Structure Of Human Apolipoprotein A-I
Length = 201
Score = 24.6 bits (52), Expect = 6.0
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 17/100 (17%)
Query: 6 ETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDD---KKAENLDKE 62
+ L+K+ + + + + KD+E+ VKA + D+ +K ++++ + +K E L E
Sbjct: 31 DNLEKETEGLRQEMSKDLEE-------VKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAE 83
Query: 63 IAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAKDDA 102
+ ++ A +EL E+ + + +RD+ +A DA
Sbjct: 84 L-QEGARQKLHELQEKLSPL------GEEMRDRARAHVDA 116
>pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1 Native
Crystals
pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKY|B Chain B, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
Length = 219
Score = 24.3 bits (51), Expect = 7.8
Identities = 27/131 (20%), Positives = 57/131 (42%), Gaps = 5/131 (3%)
Query: 7 TLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKD 66
T D D + KD KE +KA + DE +K +D + AE D++ +
Sbjct: 87 TFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQK-MVRDAEANAE-ADRKFEEL 144
Query: 67 KASPNDNELYEEDDRVKRDKERDDALRDKEKAKDDACMVRADDDTIEDDEEYGDDDKLRD 126
+ N + R + ++ D D + A + A + A + ++ +++ + K++
Sbjct: 145 VQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA--LTALETALKGEDKAAIEAKMQ- 201
Query: 127 EILGVMEELCD 137
E+ V ++L +
Sbjct: 202 ELAQVSQKLME 212
>pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|C Chain C, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|B Chain B, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|D Chain D, Deciphering The Design Of The Tropomyosin Molecule
Length = 81
Score = 24.3 bits (51), Expect = 7.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 59 LDKEIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAKDD 101
LDKE A D+A + + ++R K+ ++ AL+ K K +D
Sbjct: 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTED 55
>pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 In Complex With Its
Inhibitor Im7 Protein
Length = 206
Score = 24.3 bits (51), Expect = 7.8
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 14 AMSEAIKKDIEKD-KENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASP-- 70
A+S A+++ +K+ KE A+ K DK+ K ++ K K + L+ KD SP
Sbjct: 49 ALSSALERRKQKENKEKDAKAKLDKESKRNKPGKATGKGKPVNNKWLN-NAGKDLGSPVP 107
Query: 71 -------NDNELYEEDDRVKRDKERDDALRDKEKAK 99
D E DD R K ++ +D E +K
Sbjct: 108 DRIANKLRDKEFKSFDD--FRKKFWEEVSKDPELSK 141
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 24.3 bits (51), Expect = 7.8
Identities = 11/43 (25%), Positives = 23/43 (52%)
Query: 118 YGDDDKLRDEILGVMEELCDTLNDNLNFKKVVCMGGKVSIAFK 160
YG + +++ +E+ D D+++FK + + G+ S FK
Sbjct: 32 YGANGSTAEQLSKYVEKEADKNKDDISFKSMNKVYGRYSAVFK 74
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 24.3 bits (51), Expect = 7.8
Identities = 11/43 (25%), Positives = 23/43 (52%)
Query: 118 YGDDDKLRDEILGVMEELCDTLNDNLNFKKVVCMGGKVSIAFK 160
YG + +++ +E+ D D+++FK + + G+ S FK
Sbjct: 32 YGANGSTAEQLSKYVEKEADKNKDDISFKSMNKVYGRYSAVFK 74
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.131 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 985,934
Number of Sequences: 13198
Number of extensions: 42649
Number of successful extensions: 134
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 38
length of query: 166
length of database: 2,899,336
effective HSP length: 81
effective length of query: 85
effective length of database: 1,830,298
effective search space: 155575330
effective search space used: 155575330
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.3 bits)