BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646001|ref|NP_208182.1| hypothetical protein
[Helicobacter pylori 26695]
(98 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PXT|B Chain B, Peroxisomal 3-Ketoacyl-Coa Thiolase (E.... 29 0.072
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of T... 29 0.072
pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm Do... 25 1.0
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 25 1.0
pdb|1K8A|N Chain N, Co-Crystal Structure Of Carbomycin A Bo... 24 3.0
pdb|1H7Z|A Chain A, Adenovirus Ad3 Fibre Head >gi|15826196|... 24 3.0
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm D... 24 3.0
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 23 5.1
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 23 5.1
pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of... 23 5.1
pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase... 23 6.7
pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant... 23 6.7
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Comp... 23 6.7
>pdb|1PXT|B Chain B, Peroxisomal 3-Ketoacyl-Coa Thiolase (E.C.2.3.1.16)
pdb|1PXT|A Chain A, Peroxisomal 3-Ketoacyl-Coa Thiolase (E.C.2.3.1.16)
Length = 390
Score = 29.3 bits (64), Expect = 0.072
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 51 ENMQA---ISDKDPKEGSKNRYQNSQRAKAFGLEEEEI 85
EN+ A IS KD E + N YQ + +AK GL E+EI
Sbjct: 164 ENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEI 201
>pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 29.3 bits (64), Expect = 0.072
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 51 ENMQA---ISDKDPKEGSKNRYQNSQRAKAFGLEEEEI 85
EN+ A IS KD E + N YQ + +AK GL E+EI
Sbjct: 167 ENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEI 204
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
Complex
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
Complex
Length = 294
Score = 25.4 bits (54), Expect = 1.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 82 EEEIELWHEEH 92
EE I++WHEEH
Sbjct: 166 EERIQVWHEEH 176
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 25.4 bits (54), Expect = 1.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 82 EEEIELWHEEH 92
EE I++WHEEH
Sbjct: 169 EERIQVWHEEH 179
>pdb|1K8A|N Chain N, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|N Chain N, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|N Chain N, Co-Crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|N Chain N, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|N Chain N, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1JJ2|L Chain L, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|L Chain L, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
Length = 194
Score = 23.9 bits (50), Expect = 3.0
Identities = 13/58 (22%), Positives = 28/58 (47%), Gaps = 4/58 (6%)
Query: 38 QSKLELAQETRALENMQAISDKDPKEGSKNRYQNSQRAKAFGLEEEEIELWHEEHLLD 95
+SK + +N+Q I++ E + ++ N + ++ + E+ WHE L+D
Sbjct: 82 RSKRMMVNRITRKKNIQRIAE----ERANRKFPNLRVLNSYSVGEDGRHKWHEVILID 135
>pdb|1H7Z|A Chain A, Adenovirus Ad3 Fibre Head
pdb|1H7Z|B Chain B, Adenovirus Ad3 Fibre Head
pdb|1H7Z|C Chain C, Adenovirus Ad3 Fibre Head
Length = 194
Score = 23.9 bits (50), Expect = 3.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 1 MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRA 49
MG S N + N+N +N + A +L + S ++ LEL + A
Sbjct: 49 MGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELKYKQTA 97
>pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
Length = 297
Score = 23.9 bits (50), Expect = 3.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 82 EEEIELWHEEH 92
EE I+ WHEEH
Sbjct: 169 EERIQNWHEEH 179
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 23.1 bits (48), Expect = 5.1
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 38 QSKLELAQETRALENMQAISD 58
Q+K+EL + +ALEN + I +
Sbjct: 144 QNKIELVDKEKALENYRQIKE 164
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
Length = 410
Score = 23.1 bits (48), Expect = 5.1
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 38 QSKLELAQETRALENMQAISD 58
Q+K+EL + +ALEN + I +
Sbjct: 144 QNKIELVDKEKALENYRQIKE 164
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 23.1 bits (48), Expect = 5.1
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 38 QSKLELAQETRALENMQAISD 58
Q+K+EL + +ALEN + I +
Sbjct: 144 QNKIELVDKEKALENYRQIKE 164
>pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase Large Domain
pdb|1QHM|B Chain B, Escherichia Coli Pyruvate Formate Lyase Large Domain
Length = 624
Score = 22.7 bits (47), Expect = 6.7
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 5 ALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDK 59
AL + Y+ ++ Q + ++L Q+ + + E+A++ RAL M+ ++ K
Sbjct: 185 ALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAK 239
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 22.7 bits (47), Expect = 6.7
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 5 ALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDK 59
AL + Y+ ++ Q + ++L Q+ + + E+A++ RAL M+ ++ K
Sbjct: 185 ALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAK 239
>pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
Length = 759
Score = 22.7 bits (47), Expect = 6.7
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 5 ALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDK 59
AL + Y+ ++ Q + ++L Q+ + + E+A++ RAL M+ ++ K
Sbjct: 185 ALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAK 239
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.309 0.126 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,356
Number of Sequences: 13198
Number of extensions: 15669
Number of successful extensions: 26
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 13
length of query: 98
length of database: 2,899,336
effective HSP length: 74
effective length of query: 24
effective length of database: 1,922,684
effective search space: 46144416
effective search space used: 46144416
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)