BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644770|ref|NP_206940.1| L-lactate permease (lctP)
[Helicobacter pylori 26695]
(549 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxido... 32 0.24
pdb|1HLR|A Chain A, Structure Refinement Of The Aldehyde Ox... 31 0.41
pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycer... 30 0.69
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycer... 30 0.69
pdb|1L7V|A Chain A, Bacterial Abc Transporter Involved In B... 30 0.91
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 31.6 bits (70), Expect = 0.24
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 466 MLIATQLGL--PEVLFLAANTSGGVVGKMISPQSIAIACAAVGLVGKESEL 514
++IA LGL P+ L L NT+GG G SP A+ AV G+ L
Sbjct: 398 LMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTMEALVGVAVMATGRPCHL 448
>pdb|1HLR|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
Length = 907
Score = 30.8 bits (68), Expect = 0.41
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 467 LIATQLGL-PEVLFLAANTSGGVVGKMISPQSIAIACAAVGLVGKESEL 514
+IA +GL P+ L L AN GG G SP S A+ A G+ L
Sbjct: 398 MIAPGVGLEPDQLVLVANPMGGTFGYKFSPTSEALVAVAAMATGRPVHL 446
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 30.0 bits (66), Expect = 0.69
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 1/143 (0%)
Query: 364 LTTGTSIFLAAILSVFLLRVKISDAIGVFGATLKEMRLPILTIGVVLAFAYVANYSGMSA 423
L +I+L A +S L ++ A+ +F K +P + V AF A G+
Sbjct: 50 LGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYY 109
Query: 424 TLALALADTGHVFTFFSPVVGWLGVFLTGSDTSSNLLFGSLQMLIATQLGLPEVLFLAAN 483
L T H+ V G F T + N + ++ T + + +L L +
Sbjct: 110 NLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILAL-TD 168
Query: 484 TSGGVVGKMISPQSIAIACAAVG 506
GV ++P I + A +G
Sbjct: 169 DGNGVPRGPLAPLLIGLLIAVIG 191
>pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
Length = 281
Score = 30.0 bits (66), Expect = 0.69
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 1/143 (0%)
Query: 364 LTTGTSIFLAAILSVFLLRVKISDAIGVFGATLKEMRLPILTIGVVLAFAYVANYSGMSA 423
L +I+L A +S L ++ A+ +F K +P + V AF A G+
Sbjct: 50 LGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYY 109
Query: 424 TLALALADTGHVFTFFSPVVGWLGVFLTGSDTSSNLLFGSLQMLIATQLGLPEVLFLAAN 483
L T H+ V G F T + N + ++ T + + +L L +
Sbjct: 110 NLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILAL-TD 168
Query: 484 TSGGVVGKMISPQSIAIACAAVG 506
GV ++P I + A +G
Sbjct: 169 DGNGVPRGPLAPLLIGLLIAVIG 191
>pdb|1L7V|A Chain A, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|B Chain B, Bacterial Abc Transporter Involved In B12 Uptake
Length = 326
Score = 29.6 bits (65), Expect = 0.91
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 135 GGPVAITAAILVGLGLNPLYAAGLCLIA 162
G V + AA+L+G G P +A GLC IA
Sbjct: 96 GAGVGLIAAVLLGQGQLPNWALGLCAIA 123
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.330 0.145 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,885,204
Number of Sequences: 13198
Number of extensions: 113255
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 8
length of query: 549
length of database: 2,899,336
effective HSP length: 93
effective length of query: 456
effective length of database: 1,671,922
effective search space: 762396432
effective search space used: 762396432
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)