BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646004|ref|NP_208185.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(284 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PFK|A Chain A, Phosphofructokinase (E.C.2.7.1.11) (R-S... 31 0.14
pdb|2PFK|C Chain C, Phosphofructokinase (E.C.2.7.1.11) 31 0.14
pdb|2PFK|D Chain D, Phosphofructokinase (E.C.2.7.1.11) 31 0.14
pdb|1C7Q|A Chain A, The Crystal Structure Of Phosphoglucose... 28 1.6
pdb|1D4O|A Chain A, Crystal Structure Of Transhydrogenase D... 26 4.5
pdb|1DJL|A Chain A, The Crystal Structure Of Human Transhyd... 26 4.5
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State ... 26 5.9
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Re... 25 7.7
pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor,... 25 7.7
pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Dip... 25 7.7
pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP) 25 7.7
pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts Fr... 25 7.7
pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Fac... 25 7.7
pdb|1BL0|A Chain A, Multiple Antibiotic Resistance Protein ... 25 7.7
>pdb|1PFK|A Chain A, Phosphofructokinase (E.C.2.7.1.11) (R-State) Complex With
Fructose-1,6-Bisphosphate And ADP(Slash)Mg++
pdb|1PFK|B Chain B, Phosphofructokinase (E.C.2.7.1.11) (R-State) Complex With
Fructose-1,6-Bisphosphate And ADP(Slash)Mg++
pdb|2PFK|A Chain A, Phosphofructokinase (E.C.2.7.1.11)
pdb|2PFK|B Chain B, Phosphofructokinase (E.C.2.7.1.11)
Length = 320
Score = 31.2 bits (69), Expect = 0.14
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 62 DAFLCLGGDGTILGALRMTHSYNKPCFGV 90
DA + +GGDG+ +GA+R+T PC G+
Sbjct: 96 DALVVIGGDGSYMGAMRLT-EMGFPCIGL 123
>pdb|2PFK|C Chain C, Phosphofructokinase (E.C.2.7.1.11)
Length = 302
Score = 31.2 bits (69), Expect = 0.14
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 62 DAFLCLGGDGTILGALRMTHSYNKPCFGV 90
DA + +GGDG+ +GA+R+T PC G+
Sbjct: 96 DALVVIGGDGSYMGAMRLT-EMGFPCIGL 123
>pdb|2PFK|D Chain D, Phosphofructokinase (E.C.2.7.1.11)
Length = 305
Score = 31.2 bits (69), Expect = 0.14
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 62 DAFLCLGGDGTILGALRMTHSYNKPCFGV 90
DA + +GGDG+ +GA+R+T PC G+
Sbjct: 96 DALVVIGGDGSYMGAMRLT-EMGFPCIGL 123
>pdb|1C7Q|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
Motility FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE Phosphate Inhibitors And Its Substrate
Recognition Mechanis
pdb|1B0Z|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
pdb|2PGI| The Crystal Structure Of Phosphoglucose Isomerase - An Enzyme With
Autocrine Motility Factor Activity In Tumor Cells
pdb|1C7R|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
Motility FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE Phosphate Inhibitors And Its Substrate
Recognition Mechanis
Length = 445
Score = 27.7 bits (60), Expect = 1.6
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 21 LFEKLEQAKEWVLKLLEDEGFESFMIDSLDGAKDARLIEKADAFLCLGG---DGTILGAL 77
++ ++ K + KL + EG+E+F+I G + + L + + G D + GA
Sbjct: 170 IYVTTDRTKGALKKLADQEGYETFVIPDNIGGRYSVLTAVGLLPIAVAGLNIDRMMEGAA 229
Query: 78 RMTHSYNKP 86
H YN P
Sbjct: 230 SAYHKYNNP 238
>pdb|1D4O|A Chain A, Crystal Structure Of Transhydrogenase Domain Iii At 1.2
Angstroms Resolution
Length = 184
Score = 26.2 bits (56), Expect = 4.5
Identities = 16/49 (32%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 205 DFSLTQRPLVLGAEFCLNFCAHEDALVVIDGQATYDL-KANQPLYIQKS 252
DF T LV+GA +N A ED +I G ++ K+ Q + +++S
Sbjct: 94 DFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRS 142
>pdb|1DJL|A Chain A, The Crystal Structure Of Human Transhydrogenase Domain Iii
With Bound Nadp
pdb|1DJL|B Chain B, The Crystal Structure Of Human Transhydrogenase Domain Iii
With Bound Nadp
Length = 207
Score = 26.2 bits (56), Expect = 4.5
Identities = 16/49 (32%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 205 DFSLTQRPLVLGAEFCLNFCAHEDALVVIDGQATYDL-KANQPLYIQKS 252
DF T LV+GA +N A ED +I G ++ K+ Q + +++S
Sbjct: 117 DFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRS 165
>pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
Length = 319
Score = 25.8 bits (55), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 62 DAFLCLGGDGTILGALRMTHSYNKPCFGV 90
+ + +GGDG+ GA ++T + PC GV
Sbjct: 95 EGLVVIGGDGSYQGAKKLT-EHGFPCVGV 122
>pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
Length = 393
Score = 25.4 bits (54), Expect = 7.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 25 LEQAKEWVLKLLEDEGFESFMIDSLDGAKDARLIEKADAFLCLGGDGTIL 74
LE EW K+LE GF I + A D + + + G GT++
Sbjct: 178 LEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVV 227
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
Length = 393
Score = 25.4 bits (54), Expect = 7.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 25 LEQAKEWVLKLLEDEGFESFMIDSLDGAKDARLIEKADAFLCLGGDGTIL 74
LE EW K+LE GF I + A D + + + G GT++
Sbjct: 178 LEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVV 227
>pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Diphosphate Complex
Length = 394
Score = 25.4 bits (54), Expect = 7.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 25 LEQAKEWVLKLLEDEGFESFMIDSLDGAKDARLIEKADAFLCLGGDGTIL 74
LE EW K+LE GF I + A D + + + G GT++
Sbjct: 179 LEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVV 228
>pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP)
Length = 393
Score = 25.4 bits (54), Expect = 7.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 25 LEQAKEWVLKLLEDEGFESFMIDSLDGAKDARLIEKADAFLCLGGDGTIL 74
LE EW K+LE GF I + A D + + + G GT++
Sbjct: 178 LEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVV 227
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 25.4 bits (54), Expect = 7.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 25 LEQAKEWVLKLLEDEGFESFMIDSLDGAKDARLIEKADAFLCLGGDGTIL 74
LE EW K+LE GF I + A D + + + G GT++
Sbjct: 170 LEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVV 219
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 25.4 bits (54), Expect = 7.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 25 LEQAKEWVLKLLEDEGFESFMIDSLDGAKDARLIEKADAFLCLGGDGTIL 74
LE EW K+LE GF I + A D + + + G GT++
Sbjct: 179 LEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVV 228
>pdb|1BL0|A Chain A, Multiple Antibiotic Resistance Protein (Mara)DNA COMPLEX
Length = 129
Score = 25.4 bits (54), Expect = 7.7
Identities = 13/42 (30%), Positives = 26/42 (60%), Gaps = 1/42 (2%)
Query: 2 KDSLQTIGVFVRPTHYQNPLFEKLEQAKEWVLKLLEDEGFES 43
K++ ++G ++R + + +KL+++ E +L L E GFES
Sbjct: 50 KETGHSLGQYIR-SRKMTEIAQKLKESNEPILYLAERYGFES 90
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,690,584
Number of Sequences: 13198
Number of extensions: 71149
Number of successful extensions: 154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 15
length of query: 284
length of database: 2,899,336
effective HSP length: 87
effective length of query: 197
effective length of database: 1,751,110
effective search space: 344968670
effective search space used: 344968670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)