BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646005|ref|NP_208186.1| outer membrane protein
(omp30) [Helicobacter pylori 26695]
(242 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogena... 27 2.8
pdb|1E6W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogena... 27 2.8
pdb|1E3W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogena... 27 2.8
pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino A... 26 4.7
pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino A... 26 4.7
pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotrans... 26 4.7
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotrans... 26 4.7
pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-Phosph... 26 4.7
pdb|1CPO| Chloroperoxidase >gi|1942245|pdb|2CPO| Chlorop... 25 8.1
pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Caste... 25 8.1
>pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 26.6 bits (57), Expect = 2.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 72 FGLRLYGFFDYAHANSIRLKNPNYNNEVVQLAGQV 106
F RL +YAH + ++NP N EV++L G +
Sbjct: 223 FPSRLGDPAEYAHLVQMVIENPFLNGEVIRLDGAI 257
>pdb|1E6W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
Length = 260
Score = 26.6 bits (57), Expect = 2.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 72 FGLRLYGFFDYAHANSIRLKNPNYNNEVVQLAGQV 106
F RL +YAH + ++NP N EV++L G +
Sbjct: 222 FPSRLGDPAEYAHLVQMVIENPFLNGEVIRLDGAI 256
>pdb|1E3W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3S|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
Length = 261
Score = 26.6 bits (57), Expect = 2.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 72 FGLRLYGFFDYAHANSIRLKNPNYNNEVVQLAGQV 106
F RL +YAH + ++NP N EV++L G +
Sbjct: 223 FPSRLGDPAEYAHLVQMVIENPFLNGEVIRLDGAI 257
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 25.8 bits (55), Expect = 4.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 63 GYQFFFGKYFGLRLYG--------FFD--YAHANSIRLKNPNYNNEVVQLAGQVLGKQEI 112
GYQF G Y +++Y D YA A IR+ P ++ QL +++ K E+
Sbjct: 23 GYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 113 N 113
N
Sbjct: 83 N 83
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 25.8 bits (55), Expect = 4.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 63 GYQFFFGKYFGLRLYG--------FFD--YAHANSIRLKNPNYNNEVVQLAGQVLGKQEI 112
GYQF G Y +++Y D YA A IR+ P ++ QL +++ K E+
Sbjct: 23 GYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 113 N 113
N
Sbjct: 83 N 83
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 25.8 bits (55), Expect = 4.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 63 GYQFFFGKYFGLRLYG--------FFD--YAHANSIRLKNPNYNNEVVQLAGQVLGKQEI 112
GYQF G Y +++Y D YA A IR+ P ++ QL +++ K E+
Sbjct: 23 GYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 113 N 113
N
Sbjct: 83 N 83
>pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 25.8 bits (55), Expect = 4.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 63 GYQFFFGKYFGLRLYG--------FFD--YAHANSIRLKNPNYNNEVVQLAGQVLGKQEI 112
GYQF G Y +++Y D YA A IR+ P ++ QL +++ K E+
Sbjct: 23 GYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 113 N 113
N
Sbjct: 83 N 83
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-Phosphate Enzyme D-Amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-Phosphate Enzyme D-Amino
Acid Aminotransferase
Length = 282
Score = 25.8 bits (55), Expect = 4.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 63 GYQFFFGKYFGLRLYG--------FFD--YAHANSIRLKNPNYNNEVVQLAGQVLGKQEI 112
GYQF G Y +++Y D YA A IR+ P ++ QL +++ K E+
Sbjct: 23 GYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 113 N 113
N
Sbjct: 83 N 83
>pdb|1CPO| Chloroperoxidase
pdb|2CPO| Chloroperoxidase
Length = 299
Score = 25.0 bits (53), Expect = 8.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 80 FDYAHANSIRLKNPNYNNEV 99
FDYA N IRL+ + +NE+
Sbjct: 149 FDYADMNEIRLQRESLSNEL 168
>pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Castellanii Profilin
Ii, Cubic Crystal Form
pdb|1F2K|B Chain B, Crystal Structure Of Acanthamoeba Castellanii Profilin
Ii, Cubic Crystal Form
pdb|2ACG| Acanthamoeba Castellanii Profilin Ii
Length = 125
Score = 25.0 bits (53), Expect = 8.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 14 VSVNALLAMDGNGVFIGAGYLQGQAQMHADINSQKQATSATIKGFD 59
V+ A++ DGN AG+ A A N+ K AT+ GF+
Sbjct: 16 VTQAAIIGHDGNTWATSAGFAVSPANGAALANAFKDATAIRSNGFE 61
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.139 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,334,541
Number of Sequences: 13198
Number of extensions: 52863
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 10
length of query: 242
length of database: 2,899,336
effective HSP length: 86
effective length of query: 156
effective length of database: 1,764,308
effective search space: 275232048
effective search space used: 275232048
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)