BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646006|ref|NP_208187.1| hypothetical protein
[Helicobacter pylori 26695]
         (288 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JXL|A  Chain A, Crystal Structure Of A Y-Family Dna Pol...    29  0.55
pdb|1I1E|A  Chain A, Crystal Structure Of Clostridium Botuli...    29  0.71
pdb|1JX4|A  Chain A, Crystal Structure Of A Y-Family Dna Pol...    29  0.71
pdb|1QOX|A  Chain A, Beta-Glucosidase From Bacillus Circulan...    28  1.6
pdb|1IG0|B  Chain B, Crystal Structure Of Yeast Thiamin Pyro...    28  2.1
pdb|1CJM|A  Chain A, Human Sult1a3 With Sulfate Bound              26  6.0
pdb|1I8B|A  Chain A, Chalcone Synthase (G256f) >gi|17943399|...    25  7.9

>pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
           Ternary Complex With Dna Substrates And An Incoming
           Nucleotide
          Length = 352

 Score = 29.3 bits (64), Expect = 0.55
 Identities = 29/104 (27%), Positives = 46/104 (43%), Gaps = 10/104 (9%)

Query: 90  KTTRSQTCCNIINVLKEKKSMDYITSIVKEYLDDKNITQRFKDNLKDSNLYTKFYFINGK 149
           K    Q    I+N+L+E      I SI + YLD   I+ + +D  +  NL  +   I  K
Sbjct: 78  KEVYQQVSSRIMNLLREYSEKIEIASIDEAYLD---ISDKVRDYREAYNLGLE---IKNK 131

Query: 150 TAKKNSWVKPILI----LVEYFMSDNANPACIKMDDDLHVERIL 189
             +K      + I    +     +D A P  IK+ DD  V+R++
Sbjct: 132 ILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLI 175



>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
            Complexed With Doxorubicin
 pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
 pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
            Complexed With A Trisaccharide
          Length = 1290

 Score = 28.9 bits (63), Expect = 0.71
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 15/120 (12%)

Query: 130  FKDNLKDSNLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANP-ACIKMDDDLHVERI 188
            F   L  SN+  ++   +     K+ W  P++   EY+M +  N  + IK+  D  V  I
Sbjct: 1061 FNTELSQSNIEERYKIQSYSEYLKDFWGNPLMYNKEYYMFNAGNKNSYIKLKKDSPVGEI 1120

Query: 189  LPQNP-DPSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKEKKE-IYM 246
            L ++  + +S+++       R LY   +    ++  K N    SQ++N D   K++ IY+
Sbjct: 1121 LTRSKYNQNSKYI-----NYRDLY---IGEKFIIRRKSN----SQSINDDIVRKEDYIYL 1168



>pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
           Ternary Complex With Dna Substrates And An Incoming
           Nucleotide
          Length = 352

 Score = 28.9 bits (63), Expect = 0.71
 Identities = 29/104 (27%), Positives = 45/104 (42%), Gaps = 10/104 (9%)

Query: 90  KTTRSQTCCNIINVLKEKKSMDYITSIVKEYLDDKNITQRFKDNLKDSNLYTKFYFINGK 149
           K    Q    I N+L+E      I SI + YLD   I+ + +D  +  NL  +   I  K
Sbjct: 78  KEVYQQVSSRIXNLLREYSEKIEIASIDEAYLD---ISDKVRDYREAYNLGLE---IKNK 131

Query: 150 TAKKNSWVKPILI----LVEYFMSDNANPACIKMDDDLHVERIL 189
             +K      + I    +     +D A P  IK+ DD  V+R++
Sbjct: 132 ILEKEKITVTVGISKNKVFAKIAADXAKPNGIKVIDDEEVKRLI 175



>pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|B Chain B, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|C Chain C, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|D Chain D, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|E Chain E, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|F Chain F, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|G Chain G, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|H Chain H, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|I Chain I, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|J Chain J, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|K Chain K, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|L Chain L, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|M Chain M, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|N Chain N, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|O Chain O, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
 pdb|1QOX|P Chain P, Beta-Glucosidase From Bacillus Circulans Sp.
          Alkalophilus
          Length = 449

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 2/58 (3%)

Query: 23 VEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASILHHYSDQDIETLKELLVKFY 80
          +E  YN  G  + + D  AH      +     + C S  +H  ++D++ LK+L VK Y
Sbjct: 20 IEGAYNEDGRGMSIWDTFAHTPGKVKNGDNGNVACDS--YHRVEEDVQLLKDLGVKVY 75



>pdb|1IG0|B Chain B, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
 pdb|1IG0|A Chain A, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
          Length = 319

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 43  LLSYKDDDYLHVILCASILHHYSDQDIETLKELLVKFYYQDWVAGQTKTTRSQT----CC 98
           L  Y DDD     L    L +Y   D+++L E + K+Y ++ V    +TT+  T    C 
Sbjct: 75  LYDYLDDDET---LRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQYSTDFTKCV 131

Query: 99  NIINV 103
           N+I++
Sbjct: 132 NLISL 136



>pdb|1CJM|A Chain A, Human Sult1a3 With Sulfate Bound
          Length = 295

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 3/35 (8%)

Query: 13 NKPPLEYLKGV---EDFYNAYGEVLEMQDRHAHLL 44
          ++PPLEY+KGV   + F  A G +   Q R   LL
Sbjct: 8  SRPPLEYVKGVPLIKYFAEALGPLQSFQARPDDLL 42



>pdb|1I8B|A Chain A, Chalcone Synthase (G256f)
 pdb|1I8B|B Chain B, Chalcone Synthase (G256f)
          Length = 389

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 15/39 (38%), Positives = 20/39 (50%)

Query: 195 PSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQA 233
           P S+   DF   E GL  H L ++  +  K  TKAL +A
Sbjct: 248 PDSEGAIDFHLREAGLTFHLLKDVPGIVSKNITKALVEA 286



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.317    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,825,423
Number of Sequences: 13198
Number of extensions: 77184
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 7
length of query: 288
length of database: 2,899,336
effective HSP length: 87
effective length of query: 201
effective length of database: 1,751,110
effective search space: 351973110
effective search space used: 351973110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)