BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646007|ref|NP_208188.1| hypothetical protein
[Helicobacter pylori 26695]
(271 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diff... 28 1.5
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structur... 28 1.5
pdb|1DC1|B Chain B, Restriction Enzyme BsobiDNA COMPLEX STR... 27 2.5
pdb|1ANN| Annexin Iv 26 4.2
pdb|1I4A|A Chain A, Crystal Structure Of Phosphorylation-Mi... 26 4.2
pdb|1AOW| Annexin Iv 26 4.2
pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA 26 5.5
pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavon... 26 5.5
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 25 7.2
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 25 7.2
pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With ... 25 7.2
pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Bind... 25 9.4
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 25 9.4
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate... 25 9.4
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase... 25 9.4
pdb|1FCE| Processive Endocellulase Celf Of Clostridium Ce... 25 9.4
pdb|1FBW|A Chain A, Crystal Structure Of The Cellulase Cel4... 25 9.4
pdb|1HU4|A Chain A, Crystal Structure Of Porcine Testicular... 25 9.4
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 25 9.4
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
Length = 427
Score = 27.7 bits (60), Expect = 1.5
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 168 DYLMKKEIKNINDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELL 227
+ ++ + KN + F+EW+ +NVK T +C + RGL ++AT I +
Sbjct: 328 EQMLNVQNKNSSYFVEWIPNNVK--TAVCD-----------IPPRGLKMSATFIGNSTAI 374
Query: 228 KHAKEHEREEFVS 240
+ + E+F +
Sbjct: 375 QELFKRISEQFTA 387
>pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 27.7 bits (60), Expect = 1.5
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 168 DYLMKKEIKNINDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELL 227
+ ++ + KN + F+EW+ +NVK T +C + RGL ++AT I +
Sbjct: 328 EQMLNVQNKNSSYFVEWIPNNVK--TAVCD-----------IPPRGLKMSATFIGNSTAI 374
Query: 228 KHAKEHEREEFVS 240
+ + E+F +
Sbjct: 375 QELFKRISEQFTA 387
>pdb|1DC1|B Chain B, Restriction Enzyme BsobiDNA COMPLEX STRUCTURE:
Encirclement Of The Dna And Histidine-Catalyzed
Hydrolysis Within A Canonical Restriction Enzyme Fold
pdb|1DC1|A Chain A, Restriction Enzyme BsobiDNA COMPLEX STRUCTURE:
Encirclement Of The Dna And Histidine-Catalyzed
Hydrolysis Within A Canonical Restriction Enzyme Fold
Length = 323
Score = 26.9 bits (58), Expect = 2.5
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 27 QRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDGQQRLST 86
Q+P+ EN K +DDL YE+ R G + A+ K+ ++T Y ++ + L
Sbjct: 4 QKPF----ENHLKSVDDLKTTYEEYRAG------FIAFALEKNKRSTPY--IERARALKV 51
Query: 87 FILLAKVLADL 97
+AK DL
Sbjct: 52 AASVAKTPKDL 62
>pdb|1ANN| Annexin Iv
Length = 318
Score = 26.2 bits (56), Expect = 4.2
Identities = 22/82 (26%), Positives = 41/82 (49%), Gaps = 14/82 (17%)
Query: 129 IGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIE--WLY 186
I S+ + FQ L S +++NYL +A LM+++ +++ + E W
Sbjct: 139 IRSDTSFMFQRVLVSL-----SAGGRDESNYLDDA------LMRQDAQDLYEAGEKKWGT 187
Query: 187 SNVKFITIICP-NIDKALRIFN 207
VKF+T++C N + L +F+
Sbjct: 188 DEVKFLTVLCSRNRNHLLHVFD 209
>pdb|1I4A|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant T6d
Of Annexin Iv
Length = 318
Score = 26.2 bits (56), Expect = 4.2
Identities = 22/82 (26%), Positives = 41/82 (49%), Gaps = 14/82 (17%)
Query: 129 IGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIE--WLY 186
I S+ + FQ L S +++NYL +A LM+++ +++ + E W
Sbjct: 139 IRSDTSFMFQRVLVSL-----SAGGRDESNYLDDA------LMRQDAQDLYEAGEKKWGT 187
Query: 187 SNVKFITIICP-NIDKALRIFN 207
VKF+T++C N + L +F+
Sbjct: 188 DEVKFLTVLCSRNRNHLLHVFD 209
>pdb|1AOW| Annexin Iv
Length = 309
Score = 26.2 bits (56), Expect = 4.2
Identities = 22/82 (26%), Positives = 41/82 (49%), Gaps = 14/82 (17%)
Query: 129 IGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIE--WLY 186
I S+ + FQ L S +++NYL +A LM+++ +++ + E W
Sbjct: 130 IRSDTSFMFQRVLVSL-----SAGGRDESNYLDDA------LMRQDAQDLYEAGEKKWGT 178
Query: 187 SNVKFITIICP-NIDKALRIFN 207
VKF+T++C N + L +F+
Sbjct: 179 DEVKFLTVLCSRNRNHLLHVFD 200
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 25.8 bits (55), Expect = 5.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 205 IFNVLNARGLPLNATDIFKGELLKHAKEHEREEFV 239
I VL G +NA D+ K L A EH +E V
Sbjct: 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 25.8 bits (55), Expect = 5.5
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 30 YQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDGQQRLSTFIL 89
+ WT+++C ++L +D K K T D+V +++ +
Sbjct: 257 HNWTDKDCLRILKKCKEAVTND---------------GKRGKVTIIDMVIDKKKDENQVT 301
Query: 90 LAKVLADLYNDCLDPKNLEHLQEGWK 115
K+L D+ CL+ K E +E WK
Sbjct: 302 QIKLLMDVNMACLNGK--ERNEEEWK 325
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 25.4 bits (54), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 136 DFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNIND 180
D D+ D A ++ NNYL+N + + +IKNI+D
Sbjct: 290 DLTDSQREALDGYARQDYKEINNYLRNQGGSGNEKLDAQIKNISD 334
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 25.4 bits (54), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 136 DFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNIND 180
D D+ D A ++ NNYL+N + + +IKNI+D
Sbjct: 229 DLTDSQREALDGYARQDYKEINNYLRNQGGSGNEKLDAQIKNISD 273
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|C Chain C, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|E Chain E, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|G Chain G, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 25.4 bits (54), Expect = 7.2
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 224 GELLKHAKEHEREEFVSRWNALSQKCSDNDLTMETLFSWYNLSQSGNF 271
GE LK AK+ E + + W + D D TLFS Q N+
Sbjct: 387 GEYLKRAKDGEHQTVMMGWTGDN---GDPDNFFATLFSCAASEQGSNY 431
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 25.0 bits (53), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 98 YNDCLDPKNLEHLQEGWKDRHTERKRLSFNTI 129
Y DCL + + ++ W++RH R L+F++I
Sbjct: 209 YLDCLWAQIQKLKKDRWQERHILRPYLAFDSI 240
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 25.0 bits (53), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 98 YNDCLDPKNLEHLQEGWKDRHTERKRLSFNTI 129
Y DCL + + ++ W++RH R L+F++I
Sbjct: 209 YLDCLWAQIQKLKKDRWQERHILRPYLAFDSI 240
>pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
Length = 622
Score = 25.0 bits (53), Expect = 9.4
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 7/44 (15%)
Query: 136 DFQDALEHFNDS---QASKNKNNKNNYLKNAICLKDYLMKKEIK 176
D + L+H+ S +A KNK+NK N+ + LKD+L + I+
Sbjct: 2 DQRQKLQHWIHSCLRKADKNKDNKMNFKE----LKDFLKELNIQ 41
>pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With
Inositol-2-Methylene-1,2-Cyclic-Monophosphonate
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With
Inositol-2-Methylene-1,2-Cyclic-Monophosphonate
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
Length = 624
Score = 25.0 bits (53), Expect = 9.4
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 7/44 (15%)
Query: 136 DFQDALEHFNDS---QASKNKNNKNNYLKNAICLKDYLMKKEIK 176
D + L+H+ S +A KNK+NK N+ + LKD+L + I+
Sbjct: 4 DQRQKLQHWIHSCLRKADKNKDNKMNFKE----LKDFLKELNIQ 43
>pdb|1FCE| Processive Endocellulase Celf Of Clostridium Cellulolyticum
pdb|1FAE|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiose
pdb|1FBO|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiitol
pdb|1F9O|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum With The Thiooligosaccharide Inhibitor
Pips- Ig3
Length = 629
Score = 25.0 bits (53), Expect = 9.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 33 TEENCEKLLDDLFFNYED-------DREGDY--FCGSLVLIAISKDSKATTYDVV 78
+ +N +KLLD ++ NY D ++ GDY F V + K DV+
Sbjct: 517 SRQNAQKLLDAMWNNYSDSKGISTVEQRGDYHRFLDQEVFVPAGWTGKMPNGDVI 571
>pdb|1FBW|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellohexaose
pdb|1F9D|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellotetraose
Length = 629
Score = 25.0 bits (53), Expect = 9.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 33 TEENCEKLLDDLFFNYED-------DREGDY--FCGSLVLIAISKDSKATTYDVV 78
+ +N +KLLD ++ NY D ++ GDY F V + K DV+
Sbjct: 517 SRQNAQKLLDAMWNNYSDSKGISTVEQRGDYHRFLDQEVFVPAGWTGKMPNGDVI 571
>pdb|1HU4|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase
20beta-Hydroxysteroid Dehydrogenase
Length = 288
Score = 25.0 bits (53), Expect = 9.4
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 59 GSLVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCL-DPKNLEHLQEGWKD 116
G +V ++ ++ +A + QQ+ + + + L L N + D KN H +EGW D
Sbjct: 132 GRVVNVSSTEGVRALNECSPELQQKFKSETITEEELVGLMNKFVEDTKNGVHRKEGWSD 190
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 25.0 bits (53), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 98 YNDCLDPKNLEHLQEGWKDRHTERKRLSFNTI 129
Y DCL + + ++ W++RH R L+F++I
Sbjct: 209 YLDCLWAQIQKLKKDRWQERHILRPYLAFDSI 240
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,648,831
Number of Sequences: 13198
Number of extensions: 69428
Number of successful extensions: 159
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 19
length of query: 271
length of database: 2,899,336
effective HSP length: 87
effective length of query: 184
effective length of database: 1,751,110
effective search space: 322204240
effective search space used: 322204240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)