BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646008|ref|NP_208189.1| alanine dehydrogenase (ald)
[Helicobacter pylori 26695]
(380 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With ... 241 1e-64
pdb|1HZZ|B Chain B, The Asymmetric Complex Of The Two Nucle... 68 2e-12
pdb|1F8G|A Chain A, The X-Ray Structure Of Nicotinamide Nuc... 61 2e-10
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamid... 38 0.002
pdb|1GOS|A Chain A, Human Monoamine Oxidase B >gi|17942912|... 35 0.011
pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8... 35 0.014
pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8... 35 0.014
pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase 34 0.024
pdb|1BHY| Low Temperature Middle Resolution Structure Of ... 34 0.024
pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid 33 0.041
pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 33 0.041
pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 33 0.041
pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 33 0.041
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexe... 33 0.041
pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 33 0.041
pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mu... 33 0.041
pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form ... 33 0.041
pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glyci... 33 0.053
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxida... 32 0.091
pdb|1C0P|A Chain A, D-Amino Acic Oxidase In Complex With D-... 32 0.091
pdb|1DXY| Structure Of D-2-Hydroxyisocaproate Dehydrogenase 32 0.16
pdb|1D4G|A Chain A, Crystal Structure Of S-Adenosylhomocyst... 32 0.16
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refine... 32 0.16
pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Co... 31 0.27
pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclo... 30 0.35
pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Fer... 30 0.35
pdb|1VDC| Structure Of Nadph Dependent Thioredoxin Reductase 30 0.45
pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad... 30 0.59
pdb|1LU9|A Chain A, Structure Of Methylene-Tetrahydromethan... 28 1.3
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel... 28 1.7
pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT 28 1.7
pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant, ... 28 1.7
pdb|1GER|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Com... 28 1.7
pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated... 28 1.7
pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized F... 28 1.7
pdb|1GSN| Human Glutathione Reductase Modified By Dinitro... 28 1.7
pdb|1DNC| Human Glutathione Reductase Modified By Digluta... 28 1.7
pdb|1XAN| Human Glutathione Reductase In Complex With A X... 28 1.7
pdb|1F8U|A Chain A, Crystal Structure Of Mutant E202q Of Hu... 28 2.2
pdb|1JIH|B Chain B, Yeast Dna Polymerase Eta >gi|18158625|p... 28 2.2
pdb|1B41|A Chain A, Human Acetylcholinesterase Complexed Wi... 28 2.2
pdb|1FCD|A Chain A, Flavocytochrome C Sulfide Dehydrogenase... 27 2.9
pdb|1JPM|C Chain C, L-Ala-DL-Glu Epimerase >gi|18158850|pdb... 27 2.9
pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Deh... 27 2.9
pdb|1A7A|A Chain A, Structure Of Human Placental S-Adenosyl... 27 3.8
pdb|1MAH|A Chain A, Fasciculin2 - Mouse Acetylcholinesteras... 26 6.5
pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant F... 26 6.5
pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavo... 26 6.5
pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) 26 6.5
pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate... 26 6.5
pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant F... 26 6.5
pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant F... 26 6.5
pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frig... 26 6.5
pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant F... 26 6.5
pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant F... 26 6.5
pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Re... 26 6.5
pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodext... 26 6.5
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinell... 26 6.5
pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinell... 26 6.5
pdb|1C2O|A Chain A, Electrophorus Electricus Acetylcholines... 26 6.5
pdb|1C2B|A Chain A, Electrophorus Electricus Acetylcholines... 26 6.5
pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frig... 26 6.5
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Comp... 26 6.5
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Fo... 26 6.5
pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT ... 26 6.5
pdb|1MAA|D Chain D, Mouse Acetylcholinesterase Catalytic Do... 26 6.5
pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase C... 26 6.5
pdb|4CGT| Deletion Mutant Delta(145-150), F151d Of Cyclod... 26 6.5
pdb|1M0S|A Chain A, Northeast Structural Genomics Consortiu... 26 8.5
pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhy... 26 8.5
pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf 26 8.5
pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Ki... 26 8.5
>pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With Nad
pdb|1SAY|A Chain A, L-Alanine Dehydrogenase Complexed With Pyruvate
pdb|1PJB|A Chain A, L-Alanine Dehydrogenase
Length = 361
Score = 241 bits (614), Expect = 1e-64
Identities = 134/338 (39%), Positives = 205/338 (60%), Gaps = 6/338 (1%)
Query: 1 MTIGLVKESMDLESRVALVPDDVALIVQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDS 60
M IG+ KE + E RV L P V +V+ G V ++ AG +G++++ Y GA++V S
Sbjct: 1 MEIGVPKEIKNQEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPS 60
Query: 61 -KTAWGQDLVVKCKEPLEHEYPLLKEKATLFSYLDLAYQKSLCEMFIDKKITSICTETIA 119
K AW +++VVK KEPL EY L+++ LF+YL LA + L E + +T+I ET+
Sbjct: 61 AKDAWSREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVE 120
Query: 120 GPKNDYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKGVMLGGLSGAQRAKIVVVGG 179
P P+L PMS++AGRL+ VQ LE +G G+GV+LGG+ G + K+V++GG
Sbjct: 121 LPNRSLPLLTPMSIIAGRLS---VQFGARFLERQQG--GRGVLLGGVPGVKPGKVVILGG 175
Query: 180 GVVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGLV 239
GVVG E+AK+ +GA+V I +++ +L +E+L N A I A+ A L+
Sbjct: 176 GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLI 235
Query: 240 GAVLVTASQTPKVILRKHLKYMQKQGVVIDVACDLGGCIETIHQTSHSNPVYVEEDLLHY 299
GAVLV + P ++ ++ M+ V++DVA D GGC+ET+H TSH+ P Y ++HY
Sbjct: 236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHY 295
Query: 300 GVPNMPGIVAKTSSTAYSHASVPYLLYYLEHGLKGFLT 337
GVPNMPG V T++ A +++++PY++ GLK T
Sbjct: 296 GVPNMPGAVPWTATQALNNSTLPYVVKLANQGLKALET 333
>pdb|1HZZ|B Chain B, The Asymmetric Complex Of The Two Nucleotide-Binding
Components (Di, Diii) Of Proton-Translocating
Transhydrogenase
pdb|1HZZ|A Chain A, The Asymmetric Complex Of The Two Nucleotide-Binding
Components (Di, Diii) Of Proton-Translocating
Transhydrogenase
Length = 384
Score = 67.8 bits (164), Expect = 2e-12
Identities = 88/381 (23%), Positives = 154/381 (40%), Gaps = 48/381 (12%)
Query: 1 MTIGLVKESMDLESRVALVPDDVALIVQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDS 60
M I + KE E RVA+ P+ V +V G EV+V+ AG + +++A + GA I +
Sbjct: 1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIAST 60
Query: 61 KT-AWGQ-DLVVKCKEPLE-----HEYPLLKEKATLFSYLDLAYQKSLCEMFIDKKITSI 113
A Q D+V K + P+ E L+KE A L +L + + E +KIT+
Sbjct: 61 AAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAY 120
Query: 114 CTETIA--GPKNDYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKGVMLGGLSGAQR 171
E + IL+ S +AG A A E + F +M+
Sbjct: 121 AMELMPRISRAQSMDILSSQSNLAGYRAV-----IDGAYEFARAFP---MMMTAAGTVPP 172
Query: 172 AKIVVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHPY----YHLYDLEVLSVNEAN 227
A+++V G GV G+++ ++GA V ++ A + + D E + E
Sbjct: 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETA 232
Query: 228 ------------------IIQALNGAVGLVGAVLVTASQTPKVILRKHLKYMQKQGVVID 269
+++ L + L+ P +I + + M+ V+ID
Sbjct: 233 GGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 292
Query: 270 VACDLGG-CIETIHQTSHSNPVYVEEDLLHYGVPNMPGIVAKTSSTAYSHASVPYLLYYL 328
+A + GG C S + V+ + G N+P VA +S ++ + +L ++
Sbjct: 293 LAVEAGGNC-----PLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHV 347
Query: 329 EHGLKGFLTANTKIVANTLGG 349
+ K T K+ T+ G
Sbjct: 348 DKDTK---TLVMKLEDETVSG 365
>pdb|1F8G|A Chain A, The X-Ray Structure Of Nicotinamide Nucleotide
Transhydrogenase From Rhodospirillum Rubrum Complexed
With Nad+
pdb|1F8G|B Chain B, The X-Ray Structure Of Nicotinamide Nucleotide
Transhydrogenase From Rhodospirillum Rubrum Complexed
With Nad+
pdb|1F8G|D Chain D, The X-Ray Structure Of Nicotinamide Nucleotide
Transhydrogenase From Rhodospirillum Rubrum Complexed
With Nad+
pdb|1F8G|C Chain C, The X-Ray Structure Of Nicotinamide Nucleotide
Transhydrogenase From Rhodospirillum Rubrum Complexed
With Nad+
Length = 384
Score = 60.8 bits (146), Expect = 2e-10
Identities = 85/379 (22%), Positives = 146/379 (38%), Gaps = 48/379 (12%)
Query: 3 IGLVKESMDLESRVALVPDDVALIVQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDSKT 62
I + KE E RVA+ P+ V +V G EV+V+ AG + +++A + GA I +
Sbjct: 3 IAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAA 62
Query: 63 -AWGQ-DLVVKCKEPL-----EHEYPLLKEKATLFSYLDLAYQKSLCEMFIDKKITSICT 115
A Q D+V K + P E L+KE A L +L + + E +KIT+
Sbjct: 63 QALSQADVVWKVQRPXTAEEGTDEVALIKEGAVLXCHLGALTNRPVVEALTKRKITAYAX 122
Query: 116 ETI--AGPKNDYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKGVMLGGLSGAQRAK 173
E IL+ S +AG A A E + F G + A+
Sbjct: 123 ELXPRISRAQSXDILSSQSNLAGYRAV-----IDGAYEFARAFPXXXTAAGTV---PPAR 174
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQN----------------------HP 211
++V G GV G+++ ++GA V ++ A +
Sbjct: 175 VLVFGVGVAGLQAIATAKRLGAVVXATDVRAATKEQVESLGGKFITVDDEAXKTAETAGG 234
Query: 212 YYHLYDLEVLSVNEANIIQALNGAVGLVGAVLVTASQTPKVILRKHLKYMQKQGVVIDVA 271
Y E +++ L + L+ P +I + + + V+ID+A
Sbjct: 235 YAKEXGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEXVTKXKPGSVIIDLA 294
Query: 272 CDLGG-CIETIHQTSHSNPVYVEEDLLHYGVPNMPGIVAKTSSTAYSHASVPYLLYYLEH 330
+ GG C S + V+ + G N+P VA +S ++ + +L +++
Sbjct: 295 VEAGGNC-----PLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDK 349
Query: 331 GLKGFLTANTKIVANTLGG 349
K T K+ T+ G
Sbjct: 350 DTK---TLVXKLEDETVSG 365
>pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
Length = 478
Score = 37.7 bits (86), Expect = 0.002
Identities = 12/29 (41%), Positives = 24/29 (82%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILE 201
++ ++GGG++G+E V S++G+KVT++E
Sbjct: 185 RLTIIGGGIIGLEMGSVYSRLGSKVTVVE 213
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
Length = 520
Score = 35.4 bits (80), Expect = 0.011
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 169 AQRAKIVVVGGGVVGMESAKVLSQMGAKVTILE 201
+ + +VVVGGG+ GM +AK+L G V +LE
Sbjct: 2 SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLE 34
>pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
pdb|3LAD|B Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
Length = 476
Score = 35.0 bits (79), Expect = 0.014
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILE 201
K+ V+G GV+G+E V +++GA+VT+LE
Sbjct: 182 KLGVIGAGVIGLELGSVWARLGAEVTVLE 210
>pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Flavin-Adenine-Dinucleotide (Fad)
pdb|1LPF|B Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Flavin-Adenine-Dinucleotide (Fad)
Length = 477
Score = 35.0 bits (79), Expect = 0.014
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILE 201
K+ V+G GV+G+E V +++GA+VT+LE
Sbjct: 182 KLGVIGAGVIGLELGSVWARLGAEVTVLE 210
>pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 34.3 bits (77), Expect = 0.024
Identities = 10/30 (33%), Positives = 24/30 (79%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILEL 202
K++++GGG++G+E V S +G+++ ++E+
Sbjct: 187 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEM 216
>pdb|1BHY| Low Temperature Middle Resolution Structure Of P64k From Masc Data
Length = 482
Score = 34.3 bits (77), Expect = 0.024
Identities = 10/30 (33%), Positives = 24/30 (79%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILEL 202
K++++GGG++G+E V S +G+++ ++E+
Sbjct: 187 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEM 216
>pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid
Length = 447
Score = 33.5 bits (75), Expect = 0.041
Identities = 11/29 (37%), Positives = 23/29 (78%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILEL 202
+VV+G G +G+E+A+ ++ G KVT++++
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
>pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ala (C42a)
Length = 447
Score = 33.5 bits (75), Expect = 0.041
Identities = 11/29 (37%), Positives = 23/29 (78%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILEL 202
+VV+G G +G+E+A+ ++ G KVT++++
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
>pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Ser 41 Replaced
By Cys (S41c)
Length = 447
Score = 33.5 bits (75), Expect = 0.041
Identities = 11/29 (37%), Positives = 23/29 (78%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILEL 202
+VV+G G +G+E+A+ ++ G KVT++++
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
>pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ser (C42s)
Length = 447
Score = 33.5 bits (75), Expect = 0.041
Identities = 11/29 (37%), Positives = 23/29 (78%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILEL 202
+VV+G G +G+E+A+ ++ G KVT++++
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 33.5 bits (75), Expect = 0.041
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VV+GGG +G+E + G KVTILE
Sbjct: 173 LVVIGGGYIGIELGTAYANFGTKVTILE 200
Score = 25.8 bits (55), Expect = 8.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 169 AQRAKIVVVGGGVVGMESAKVLSQMGAKVTILE 201
A + +VVG G G +A +Q+G KVTI+E
Sbjct: 1 AIETETLVVGAGPGGYVAAIRAAQLGQKVTIVE 33
>pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Leu 40 Replaced
By Cys (L40c)
Length = 447
Score = 33.5 bits (75), Expect = 0.041
Identities = 11/29 (37%), Positives = 23/29 (78%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILEL 202
+VV+G G +G+E+A+ ++ G KVT++++
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 33.5 bits (75), Expect = 0.041
Identities = 11/29 (37%), Positives = 23/29 (78%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILEL 202
+VV+G G +G+E+A+ ++ G KVT++++
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
>pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form With Cys 42
Oxidized To A Sulfonic Acid (Cys42-So3h)
pdb|2NPX| Nadh Peroxidase (E.C.1.11.1.1) With Cys 42 Oxidized To A Sulfonic
Acid (Cys42-So3h)
Length = 447
Score = 33.5 bits (75), Expect = 0.041
Identities = 11/29 (37%), Positives = 23/29 (78%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILEL 202
+VV+G G +G+E+A+ ++ G KVT++++
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 33.1 bits (74), Expect = 0.053
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILE 201
K+VV+G G +G+E V ++G++VT++E
Sbjct: 179 KLVVIGAGYIGLEMGSVWGRIGSEVTVVE 207
Score = 29.3 bits (64), Expect = 0.77
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 167 SGAQRAKIVVVGGGVVGMESAKVLSQMGAKVTILE 201
SG+ +V++GGG G +A +Q+G K T +E
Sbjct: 2 SGSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE 36
>pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
Length = 498
Score = 32.3 bits (72), Expect = 0.091
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 165 GLSGAQRAK-IVVVGGGVVGMESAKVLSQMGAKVTILE 201
GL K +V+VG G+ G+ +A VL+ G +VT+LE
Sbjct: 26 GLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE 63
>pdb|1C0P|A Chain A, D-Amino Acic Oxidase In Complex With D-Alanine And A
Partially Occupied Biatomic Species
pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes At
Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex With
Two Anthranylate Molecules
Length = 363
Score = 32.3 bits (72), Expect = 0.091
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILELD 203
++VV+G GV+G+ SA +L++ G V IL D
Sbjct: 8 RVVVLGSGVIGLSSALILARKGYSVHILARD 38
>pdb|1DXY| Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 31.6 bits (70), Expect = 0.16
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 29/196 (14%)
Query: 160 GVMLGGLSGAQRAKIVVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHP---YYHLY 216
G +G G Q + V+G G +G + K+ GAKV + Y +HP Y L
Sbjct: 136 GTFIGKELGQQT--VGVMGTGHIGQVAIKLFKGFGAKVIAYD-PYPMKGDHPDFDYVSLE 192
Query: 217 DL----EVLSVNEANIIQALN----GAVGLV--GAVLVTASQTPKVI----LRKHLKYMQ 262
DL +V+ ++ I Q + A L+ GA+++ ++ P +I + +LK +
Sbjct: 193 DLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTAR-PNLIDTQAMLSNLKSGK 251
Query: 263 KQGVVIDV-ACDLGGCIETIHQTSHSNPVYVEEDLLHYGVPNMPGIVAKTSSTAYSHASV 321
GV ID + + S +P++ ++LL MP +V Y+ +V
Sbjct: 252 LAGVGIDTYEYETEDLLNLAKHGSFKDPLW--DELL-----GMPNVVLSPHIAYYTETAV 304
Query: 322 PYLLYYLEHGLKGFLT 337
++Y+ L FLT
Sbjct: 305 HNMVYFSLQHLVDFLT 320
>pdb|1D4G|A Chain A, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|B Chain B, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|C Chain C, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|D Chain D, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|E Chain E, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|F Chain F, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|G Chain G, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|H Chain H, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
Length = 430
Score = 31.6 bits (70), Expect = 0.16
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNG 234
VV G G VG A+ L GA+V I E+D N + EV +++EA
Sbjct: 215 VVAGYGDVGKGCAQALRGFGARVIITEIDPI---NALQAAMEGYEVTTMDEA-------- 263
Query: 235 AVGLVGAVLVTASQTPKVILRKHLKYMQKQGVVIDV 270
G + VT + +IL +H + M+ +V ++
Sbjct: 264 --CKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNI 297
>pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
Length = 431
Score = 31.6 bits (70), Expect = 0.16
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNG 234
VV G G VG A+ L GA+V I E+D N + EV +++EA
Sbjct: 216 VVAGYGDVGKGCAQALRGFGARVIITEIDPI---NALQAAMEGYEVTTMDEA-------- 264
Query: 235 AVGLVGAVLVTASQTPKVILRKHLKYMQKQGVVIDV 270
G + VT + +IL +H + M+ +V ++
Sbjct: 265 --CKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNI 298
>pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Nicotinamide-Adenine-Dinucleotide (Nad+)
Length = 458
Score = 30.8 bits (68), Expect = 0.27
Identities = 12/28 (42%), Positives = 21/28 (74%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVGGG +G+E ++GA+V+++E
Sbjct: 174 LVVVGGGYIGLELGIAYRKLGAQVSVVE 201
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
Length = 302
Score = 30.4 bits (67), Expect = 0.35
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 41 ANSGYSNEAYESVGAKIVDSKTAWGQDLVVKCKEPLEHEYPLLKEKATLFSYLDLAYQKS 100
+N+G+ E Y +GA V + AW L E + LK + T Y+ Y +
Sbjct: 231 SNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAI-----ALKGQETCDIYMH--YLRG 283
Query: 101 LCEMFIDKKITSICTETI 118
++F D K T +C T+
Sbjct: 284 CSDLFRD-KYTDVCQFTL 300
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
Length = 408
Score = 30.4 bits (67), Expect = 0.35
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 171 RAKIVVVGGGVVGMESAKVLSQMGAKVTILE 201
++++++VGGGV+G+E A G V+++E
Sbjct: 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVE 175
>pdb|1VDC| Structure Of Nadph Dependent Thioredoxin Reductase
Length = 333
Score = 30.0 bits (66), Expect = 0.45
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 15/60 (25%)
Query: 156 FMGKGVMLGGL-----------SGA----QRAKIVVVGGGVVGMESAKVLSQMGAKVTIL 200
F+G G +LGG GA + + V+GGG ME A L++ G+KV I+
Sbjct: 129 FVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYII 188
>pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
pdb|1GES|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
Length = 450
Score = 29.6 bits (65), Expect = 0.59
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILELDYAKL 207
++ VVG G +G+E V++ +GAK + E+ A L
Sbjct: 169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL 203
>pdb|1LU9|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LUA|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
Length = 287
Score = 28.5 bits (62), Expect = 1.3
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 158 GKGVMLGGLSGAQRAK--IVVVGGGVVGMESAKVLSQMGAKVTIL--ELDYAKLQNHPYY 213
G +++ G+ + K +V+ G G VGM SA +L+ GA+V + +LD A+
Sbjct: 105 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN 164
Query: 214 HLYDLEVL---SVNEANIIQALNGA 235
+ + V + ++A+ +A+ GA
Sbjct: 165 KRFKVNVTAAETADDASRAEAVKGA 189
>pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With
1,8-Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With
1,8-Diaminooctane
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With
1,8-Diaminooctane
pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
Length = 472
Score = 28.1 bits (61), Expect = 1.7
Identities = 18/65 (27%), Positives = 34/65 (51%), Gaps = 7/65 (10%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVN---EANII 229
+++VVG G+ G+ +AK LS+ G I +L + +H ++ +N AN +
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAG----ITDLLILEATDHIGGRMHKTNFAGINVELGANWV 61
Query: 230 QALNG 234
+ +NG
Sbjct: 62 EGVNG 66
>pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 28.1 bits (61), Expect = 1.7
Identities = 11/27 (40%), Positives = 20/27 (73%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILE 201
+V+GGG G+ESA +++GA+ ++E
Sbjct: 24 LVIGGGSGGLESAWRAAELGARAAVVE 50
Score = 28.1 bits (61), Expect = 1.7
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTIL 200
V+VG G + +E A +LS +G+K +++
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTSLM 216
>pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
pdb|3GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|2GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|4GRT| Human Glutathione Reductase A34e, R37w Mutant, Mixed Disulfide
Between Trypanothione And The Enzyme
Length = 461
Score = 28.1 bits (61), Expect = 1.7
Identities = 11/27 (40%), Positives = 20/27 (73%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILE 201
+V+GGG G+ESA +++GA+ ++E
Sbjct: 7 LVIGGGSGGLESAWRAAELGARAAVVE 33
Score = 28.1 bits (61), Expect = 1.7
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTIL 200
V+VG G + +E A +LS +G+K +++
Sbjct: 174 VIVGAGYIAVEMAGILSALGSKTSLM 199
>pdb|1GER|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Complexed With Fad
pdb|1GET|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Wild-Type Complexed
With Nadp And Fad
pdb|1GER|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Complexed With Fad
pdb|1GET|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Wild-Type Complexed
With Nadp And Fad
Length = 450
Score = 28.1 bits (61), Expect = 1.7
Identities = 12/37 (32%), Positives = 23/37 (61%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQN 209
++ VVG G + +E A V++ +GAK + +A L++
Sbjct: 169 RVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRS 205
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 28.1 bits (61), Expect = 1.7
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTIL 200
V+VG G + +E A +LS +G+K +++
Sbjct: 176 VIVGAGYIAVEMAGILSALGSKTSLM 201
Score = 27.7 bits (60), Expect = 2.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILE 201
+V+GGG G+ SA+ +++GA+ ++E
Sbjct: 7 LVIGGGSGGLASARRAAELGARAAVVE 33
>pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized Form (E)
pdb|1GRB| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With Nadh
And Phosphate
pdb|1GRA| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With
Glutathione Disulfide And Nadp+
pdb|1GRE| Glutathione Reductase (E.C.1.6.4.2) Complex With Covalently Bound
Glutathione And Phosphate
pdb|1GRF| Glutathione Reductase (E.C.1.6.4.2) Carboxymethylated At Cys 58
Complex With Phosphate
pdb|1GRG| Glutathione Reductase (E.C.1.6.4.2) Modified By Bcnu
(1,3-Bis(2-Chloroethyl)-1-Nitrosourea) At Cys 58
Complexed With Phosphate
pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|4GR1| Glutathione Reductase (E.C.1.6.4.2) Oxidized Form Complexed With
Retro-Gssg
pdb|1GRH| Glutathione Reductase (E.C.1.6.4.2) Modified By Hecnu
(1-(2-Chloroethyl)-3-(2-Hydroxyethyl)-1-Nitrosourea) At
Cys 58 Complexed With Phosphate
Length = 478
Score = 28.1 bits (61), Expect = 1.7
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTIL 200
V+VG G + +E A +LS +G+K +++
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTSLM 216
Score = 27.7 bits (60), Expect = 2.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILE 201
+V+GGG G+ SA+ +++GA+ ++E
Sbjct: 24 LVIGGGSGGLASARRAAELGARAAVVE 50
>pdb|1GSN| Human Glutathione Reductase Modified By Dinitrosoglutathione
Length = 478
Score = 28.1 bits (61), Expect = 1.7
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTIL 200
V+VG G + +E A +LS +G+K +++
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTSLM 216
Score = 27.7 bits (60), Expect = 2.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILE 201
+V+GGG G+ SA+ +++GA+ ++E
Sbjct: 24 LVIGGGSGGLASARRAAELGARAAVVE 50
>pdb|1DNC| Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 28.1 bits (61), Expect = 1.7
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTIL 200
V+VG G + +E A +LS +G+K +++
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTSLM 216
Score = 27.7 bits (60), Expect = 2.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILE 201
+V+GGG G+ SA+ +++GA+ ++E
Sbjct: 24 LVIGGGSGGLASARRAAELGARAAVVE 50
>pdb|1XAN| Human Glutathione Reductase In Complex With A Xanthene Inhibitor
Length = 461
Score = 28.1 bits (61), Expect = 1.7
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTIL 200
V+VG G + +E A +LS +G+K +++
Sbjct: 174 VIVGAGYIAVEMAGILSALGSKTSLM 199
Score = 27.7 bits (60), Expect = 2.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILE 201
+V+GGG G+ SA+ +++GA+ ++E
Sbjct: 7 LVIGGGSGGLASARRAAELGARAAVVE 33
>pdb|1F8U|A Chain A, Crystal Structure Of Mutant E202q Of Human
Acetylcholinesterase Complexed With Green Mamba Venom
Peptide Fasciculin-Ii
Length = 583
Score = 27.7 bits (60), Expect = 2.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 116 ETIAGPKNDYPILAPMSVVAGRLAAHLVQHYLLALEH 152
E ++ D+ ++ P++ +AGRLAA + Y EH
Sbjct: 396 EALSDVVGDHNVVCPVAQLAGRLAAQGARVYAYVFEH 432
>pdb|1JIH|B Chain B, Yeast Dna Polymerase Eta
pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta
Length = 531
Score = 27.7 bits (60), Expect = 2.2
Identities = 26/101 (25%), Positives = 50/101 (48%), Gaps = 12/101 (11%)
Query: 8 ESMDLESRVALVPDDVALIVQ-KGVEVLVQNSAGANSGYSNEAYE--SVGAKIVDSKTAW 64
+ ++ E ++P V++ ++ K EV ++ A G + +++E VG K V
Sbjct: 428 QDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGIKFVT----- 482
Query: 65 GQDLVVKCKEPLEHEYPLLKEKATLFSYLDLAYQKSLCEMF 105
DL +K K + YPL K T+ ++ + QK++ +MF
Sbjct: 483 --DLDIKGKN--KSYYPLTKLSMTITNFDIIDLQKTVVDMF 519
>pdb|1B41|A Chain A, Human Acetylcholinesterase Complexed With Fasciculin-Ii,
Glycosylated Protein
Length = 539
Score = 27.7 bits (60), Expect = 2.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 116 ETIAGPKNDYPILAPMSVVAGRLAAHLVQHYLLALEH 152
E ++ D+ ++ P++ +AGRLAA + Y EH
Sbjct: 392 EALSDVVGDHNVVCPVAQLAGRLAAQGARVYAYVFEH 428
>pdb|1FCD|A Chain A, Flavocytochrome C Sulfide Dehydrogenase (Fcsd)
pdb|1FCD|B Chain B, Flavocytochrome C Sulfide Dehydrogenase (Fcsd)
Length = 401
Score = 27.3 bits (59), Expect = 2.9
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 173 KIVVVGGGVVGMESAKV--LSQMGAKVTILELDYAKLQNHPYYHLY 216
K+VVVGGG G +AK L+ +VT++E N YY Y
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIE------PNTDYYTCY 43
>pdb|1JPM|C Chain C, L-Ala-DL-Glu Epimerase
pdb|1JPM|A Chain A, L-Ala-DL-Glu Epimerase
pdb|1JPM|B Chain B, L-Ala-DL-Glu Epimerase
pdb|1JPM|D Chain D, L-Ala-DL-Glu Epimerase
Length = 366
Score = 27.3 bits (59), Expect = 2.9
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 124 DYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKGVMLGGLSGAQRAKIVVVGGGVVG 183
D PI+A SV R A ++Q L ++K GG+SGA++ + GV
Sbjct: 238 DTPIMADESVFTPRQAFEVLQTRSADLINIKLMKA-----GGISGAEKINAMAEACGVEC 292
Query: 184 MESAKVLSQMG 194
M + + +++G
Sbjct: 293 MVGSMIETKLG 303
>pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|B Chain B, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|C Chain C, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis
Length = 274
Score = 27.3 bits (59), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILELDYAK 206
+I+++GGG VG+ L G K+T++ D K
Sbjct: 15 RILLIGGGEVGLTRLYKLXPTGCKLTLVSPDLHK 48
>pdb|1A7A|A Chain A, Structure Of Human Placental S-Adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-Adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 26.9 bits (58), Expect = 3.8
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNG 234
VV G G VG A+ L GA+V I E+D N EV + +EA
Sbjct: 217 VVAGYGDVGKGCAQALRGFGARVIITEIDPI---NALQAAXEGYEVTTXDEA-------- 265
Query: 235 AVGLVGAVLVTASQTPKVILRKHLKYMQKQGVVIDV 270
G + VT + +IL +H + + +V ++
Sbjct: 266 --CQEGNIFVTTTGCIDIILGRHFEQXKDDAIVCNI 299
>pdb|1MAH|A Chain A, Fasciculin2 - Mouse Acetylcholinesterase Complex
Length = 543
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 124 DYPILAPMSVVAGRLAAHLVQHYLLALEH 152
D+ ++ P++ +AGRLAA + Y EH
Sbjct: 404 DHNVVCPVAQLAGRLAAQGARVYAYIFEH 432
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVG G G +A + GAKV ++E
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIE 156
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVG G G +A + GAKV ++E
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIE 156
>pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19)
Length = 684
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 203 DYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGL 238
D++ L+N Y +LYDL + N A I + A+ L
Sbjct: 182 DFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKL 217
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 170 QRAKIVVVGGGVVGMESAKVLSQMGAKV 197
Q K+ V+G G +G K+L+ +GA+V
Sbjct: 123 QGEKVAVLGLGEIGTRVGKILAALGAQV 150
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVG G G +A + GAKV ++E
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIE 156
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVG G G +A + GAKV ++E
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIE 156
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
Length = 571
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVG G G +A + GAKV ++E
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIE 156
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVG G G +A + GAKV ++E
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIE 156
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVG G G +A + GAKV ++E
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIE 156
>pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLA|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 26.2 bits (56), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILEL 202
+V+GGG+ G+ +A Q G +L L
Sbjct: 9 LVIGGGLAGLRAAVATQQKGLSTIVLSL 36
>pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|1CGU| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) Mutant With Asp
229 Replaced By Ala (D229a)
pdb|7CGT| Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 203 DYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGL 238
D++ L+N Y +LYDL + N A I + A+ L
Sbjct: 182 DFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKL 217
>pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 655
Score = 26.2 bits (56), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILEL 202
+V+GGG+ G+ +A Q G +L L
Sbjct: 9 LVIGGGLAGLRAAVATQQKGLSTIVLSL 36
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 26.2 bits (56), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 175 VVVGGGVVGMESAKVLSQMGAKVTILEL 202
+V+GGG+ G+ +A Q G +L L
Sbjct: 9 LVIGGGLAGLRAAVATQQKGLSTIVLSL 36
>pdb|1C2O|A Chain A, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|B Chain B, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|C Chain C, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|D Chain D, Electrophorus Electricus Acetylcholinesterase
Length = 539
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 124 DYPILAPMSVVAGRLAAHLVQHYLLALEH 152
D+ ++ P++ +AGRLAA + Y EH
Sbjct: 400 DHNVVCPVAQLAGRLAAQGARVYAYIFEH 428
>pdb|1C2B|A Chain A, Electrophorus Electricus Acetylcholinesterase
Length = 540
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 124 DYPILAPMSVVAGRLAAHLVQHYLLALEH 152
D+ ++ P++ +AGRLAA + Y EH
Sbjct: 401 DHNVVCPVAQLAGRLAAQGARVYAYIFEH 429
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVG G G +A + GAKV ++E
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIE 156
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+V++G G G+ +A GAKV +LE
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLE 156
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+V++G G G+ +A GAKV +LE
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLE 156
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 174 IVVVGGGVVGMESAKVLSQMGAKVTILE 201
+VVVG G G +A + GAKV ++E
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIE 156
>pdb|1MAA|D Chain D, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|A Chain A, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|C Chain C, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|B Chain B, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
Length = 547
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 124 DYPILAPMSVVAGRLAAHLVQHYLLALEH 152
D+ ++ P++ +AGRLAA + Y EH
Sbjct: 404 DHNVVCPVAQLAGRLAAQGARVYAYIFEH 432
>pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase Complexed With Its
Main Product Beta-Cyclodextrin
pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
Length = 684
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 203 DYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGL 238
D++ L+N Y +LYDL + N A I + A+ L
Sbjct: 182 DFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKL 217
>pdb|4CGT| Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 203 DYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGL 238
D++ L+N Y +LYDL + N A I + A+ L
Sbjct: 176 DFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKL 211
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21)
pdb|1M0S|B Chain B, Northeast Structural Genomics Consortium (Nesg Id Ir21)
Length = 219
Score = 25.8 bits (55), Expect = 8.5
Identities = 41/180 (22%), Positives = 72/180 (39%), Gaps = 36/180 (20%)
Query: 134 VAGRLAAHLVQHYLLALEHVKGFMGKGVM-----LGGLSGAQRAKIVVVGGGVVGMESAK 188
+ G +AA LL + ++ F V + G K+++ GGG + K
Sbjct: 46 IQGAVAASKESEELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAA-LTREK 104
Query: 189 VLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGLVGAVLVTASQ 248
+++ + AK I +D +K ++VL ++ + A VG L
Sbjct: 105 IVAAL-AKKFICIVDSSK----------QVDVLGSTFPLPVEVIPMARSQVGRKLAALGG 153
Query: 249 TPKVILRKHLKYMQKQGVVIDVACDLGGCIETIHQTSHSNPVYVEEDLLHYGVPNMPGIV 308
+P+ ++GVV D G I +H S NPV +E++L N+ G+V
Sbjct: 154 SPEY----------REGVVTDN----GNVILDVHNFSILNPVEIEKEL-----NNVAGVV 194
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 25.8 bits (55), Expect = 8.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILE 201
++ V+GGG G+E+A L+ + VT+LE
Sbjct: 146 RVAVIGGGNSGVEAAIDLAGIVEHVTLLE 174
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 25.8 bits (55), Expect = 8.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 173 KIVVVGGGVVGMESAKVLSQMGAKVTILE 201
++ V+GGG G+E+A L+ + VT+LE
Sbjct: 357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLE 385
>pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|D Chain D, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|E Chain E, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|C Chain C, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|H Chain H, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|F Chain F, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|B Chain B, The Structure Of Leishmania Pyruvate Kinase
Length = 499
Score = 25.8 bits (55), Expect = 8.5
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 22 DVALIVQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDSKTAWGQDLVVKCKEPLEHEYP 81
DVA V G + ++ + A Y NE + + +++++A + + + L+H P
Sbjct: 316 DVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQH-IP 374
Query: 82 LLKEKATLFSYLDLAYQKSLCEMFI 106
+ ++A S ++ Y+ M +
Sbjct: 375 MSADEAVCSSAVNSVYETKAKAMVV 399
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,095,550
Number of Sequences: 13198
Number of extensions: 85525
Number of successful extensions: 425
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 108
length of query: 380
length of database: 2,899,336
effective HSP length: 90
effective length of query: 290
effective length of database: 1,711,516
effective search space: 496339640
effective search space used: 496339640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)