BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644771|ref|NP_206941.1| L-lactate permease (lctP)
[Helicobacter pylori 26695]
         (551 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1HLR|A  Chain A, Structure Refinement Of The Aldehyde Ox...    32  0.24
pdb|1DGJ|A  Chain A, Crystal Structure Of The Aldehyde Oxido...    31  0.31
pdb|1L7V|A  Chain A, Bacterial Abc Transporter Involved In B...    30  0.70
pdb|1KIT|    Vibrio Cholerae Neuraminidase                         27  7.7

>pdb|1HLR|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
           Desulfovibrio Gigas At 1.28 A
          Length = 907

 Score = 31.6 bits (70), Expect = 0.24
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 478 PEVLTLTANTVGGTLGKMISPQSIAIACAAVGLAGK 513
           P+ L L AN +GGT G   SP S A+   A    G+
Sbjct: 407 PDQLVLVANPMGGTFGYKFSPTSEALVAVAAMATGR 442



>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
           Desulfovibrio Desulfuricans Atcc 27774
          Length = 907

 Score = 31.2 bits (69), Expect = 0.31
 Identities = 17/43 (39%), Positives = 20/43 (45%)

Query: 475 LHLPEVLTLTANTVGGTLGKMISPQSIAIACAAVGLAGKESDL 517
           L  P+ L L  NT GGT G   SP   A+   AV   G+   L
Sbjct: 406 LEFPKDLVLVQNTTGGTFGYKFSPTMEALVGVAVMATGRPCHL 448



>pdb|1L7V|A Chain A, Bacterial Abc Transporter Involved In B12 Uptake
 pdb|1L7V|B Chain B, Bacterial Abc Transporter Involved In B12 Uptake
          Length = 326

 Score = 30.0 bits (66), Expect = 0.70
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 136 GGPIAITAAILVGLGLSPLYSAGLCLIANTAPVA-----FGAVGIPISAMASAVGVPAIL 190
           G  + + AA+L+G G  P ++ GLC IA    +      F    +  S +  A     I+
Sbjct: 96  GAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGII 155

Query: 191 ISAM-TGKILFFVSLLVPFFIVFLMDGFKGI 220
            SA+ T  I F  S+ +     +   GF G+
Sbjct: 156 CSALXTWAIYFSTSVDLRQLXYWXXGGFGGV 186



 Score = 26.6 bits (57), Expect = 7.7
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 116 ILVILIGFCFGSF--LEGAIGFGGPIAITAAILVGL--------GLSPLYSAGLCLIANT 165
           +LV   G+  G    L GAIGF G +      L GL        G +   ++ L L    
Sbjct: 234 VLVAATGWXVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASALLLADIV 293

Query: 166 APVAFGAVGIPISAMASAVGVPAIL 190
           A +A  A  +PI  + + +G P  +
Sbjct: 294 ARLALAAAELPIGVVTATLGAPVFI 318



>pdb|1KIT|   Vibrio Cholerae Neuraminidase
          Length = 757

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 22/115 (19%)

Query: 385 RVRVSDALSVFGETLKEMRYPILTIGLVLSFAYVSNYSGISSTLAL-------------- 430
           ++R+ D  +   +     R  ++T+ +  S   V+N +G+S+ + L              
Sbjct: 361 KIRIVDGAANQIQVADGSRKYVVTLSIDESGGLVANLNGVSAPIILQSEHAKVHSFHDYE 420

Query: 431 ----ALTHTGLAFTFFSPLIGWVGVFLTGSDTSSNLLFGSLQQLTAQRLHLPEVL 481
               AL HT   F     +  W G         +N+ FG+       RLH+ +++
Sbjct: 421 LQYSALNHTTTLFVDGQQITTWAGEV----SQENNIQFGNADAQIDGRLHVQKIV 471



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.329    0.144    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,801,061
Number of Sequences: 13198
Number of extensions: 107133
Number of successful extensions: 258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 6
length of query: 551
length of database: 2,899,336
effective HSP length: 93
effective length of query: 458
effective length of database: 1,671,922
effective search space: 765740276
effective search space used: 765740276
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)