BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646014|ref|NP_208195.1| type I restriction enzyme S
protein (hsdS) [Helicobacter pylori 26695]
(96 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|12E8|H Chain H, 2e8 Fab Fragment >gi|3401957|pdb|12E8|P... 25 1.8
pdb|1CVL| Crystal Structure Of Bacterial Lipase From Chro... 24 3.1
pdb|1JV5|B Chain B, Anti-Blood Group A Fv 24 3.1
pdb|1TAH|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol H... 24 3.1
pdb|1DMS| Structure Of Dmso Reductase 23 4.0
pdb|1JFX|A Chain A, Crystal Structure Of The Bacterial Lyso... 23 5.2
pdb|2BLT|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Cephalosp... 23 5.2
pdb|1GA0|A Chain A, Structure Of The E. Cloacae Gc1 Beta-La... 23 5.2
pdb|1ECX|B Chain B, Nifs-Like Protein >gi|7546479|pdb|1ECX|... 23 6.8
pdb|1EG5|B Chain B, Nifs-Like Protein >gi|7546280|pdb|1EG5|... 22 8.9
pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At... 22 8.9
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosp... 22 8.9
>pdb|12E8|H Chain H, 2e8 Fab Fragment
pdb|12E8|P Chain P, 2e8 Fab Fragment
Length = 221
Score = 24.6 bits (52), Expect = 1.8
Identities = 15/40 (37%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Query: 43 INWFTPTEIGITKYVYKSQRTITPLGLKKSSTKLLPIGTI 82
I W P EIG T+YV K Q T S+T L + ++
Sbjct: 48 IGWIDP-EIGDTEYVPKFQGKATMTADTSSNTAYLQLSSL 86
>pdb|1CVL| Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 23.9 bits (50), Expect = 3.1
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 20 GDIAEIIGGGTPSTQITSFWSGSINWFTPTEIGITKYVYKSQRTITPLGLKKSSTKLLPI 79
G E +GG S + W G+ T T +G+T S T+ + ST L
Sbjct: 193 GAATETVGG---SQHLLYSWGGTAIQPTSTVLGVTGATDTSTGTLDVANVTDPSTLALLA 249
Query: 80 GTILLTSRAS 89
++ +RAS
Sbjct: 250 TGAVMINRAS 259
>pdb|1JV5|B Chain B, Anti-Blood Group A Fv
Length = 117
Score = 23.9 bits (50), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 12 LNWQKVRLGDIAEIIGGGTPSTQITSF 38
+NW K+R G E IG P + IT++
Sbjct: 34 INWVKLRPGQGLEWIGDIYPGSGITNY 60
>pdb|1TAH|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TAH|B Chain B, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TAH|C Chain C, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TAH|D Chain D, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
Length = 318
Score = 23.9 bits (50), Expect = 3.1
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 20 GDIAEIIGGGTPSTQITSFWSGSINWFTPTEIGITKYVYKSQRTITPLGLKKSSTKLLPI 79
G E +GG S + W G+ T T +G+T S T+ + ST L
Sbjct: 192 GAATETVGG---SQHLLYSWGGTAIQPTSTVLGVTGATDTSTGTLDVANVTDPSTLALLA 248
Query: 80 GTILLTSRAS 89
++ +RAS
Sbjct: 249 TGAVMINRAS 258
>pdb|1DMS| Structure Of Dmso Reductase
Length = 781
Score = 23.5 bits (49), Expect = 4.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 28 GGTPSTQITSFWSGSINWFTPTEIGITKYVYKSQRTITPLG 68
G T ST T+ W+ I+ I ++KS+RT+ G
Sbjct: 281 GETDSTPKTAEWASDISGVPAETIKELARLFKSKRTMLAAG 321
>pdb|1JFX|A Chain A, Crystal Structure Of The Bacterial Lysozyme From
Streptomyces Coelicolor At 1.65 A Resolution
Length = 217
Score = 23.1 bits (48), Expect = 5.2
Identities = 8/18 (44%), Positives = 11/18 (60%)
Query: 37 SFWSGSINWFTPTEIGIT 54
S W GSINW + G++
Sbjct: 11 SHWQGSINWSSVKSAGMS 28
>pdb|2BLT|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Cephalosporinase)
pdb|2BLT|B Chain B, Beta-Lactamase (E.C.3.5.2.6) (Cephalosporinase)
pdb|1BLS|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Cephalosporinase) Complexed
With A Phosphonate Inhibitor
pdb|1BLS|B Chain B, Beta-Lactamase (E.C.3.5.2.6) (Cephalosporinase) Complexed
With A Phosphonate Inhibitor
Length = 361
Score = 23.1 bits (48), Expect = 5.2
Identities = 9/22 (40%), Positives = 12/22 (53%)
Query: 10 TPLNWQKVRLGDIAEIIGGGTP 31
T WQ +R+ D+A GG P
Sbjct: 97 TGKQWQGIRMLDLATYTAGGLP 118
>pdb|1GA0|A Chain A, Structure Of The E. Cloacae Gc1 Beta-Lactamase With A
Cephalosporin Sulfone Inhibitor
pdb|1GCE|A Chain A, Structure Of The Beta-Lactamase Of Enterobacter Cloacae
Gc1
Length = 364
Score = 23.1 bits (48), Expect = 5.2
Identities = 9/22 (40%), Positives = 12/22 (53%)
Query: 10 TPLNWQKVRLGDIAEIIGGGTP 31
T WQ +R+ D+A GG P
Sbjct: 97 TGKQWQGIRMLDLATYTAGGLP 118
>pdb|1ECX|B Chain B, Nifs-Like Protein
pdb|1ECX|A Chain A, Nifs-Like Protein
Length = 384
Score = 22.7 bits (47), Expect = 6.8
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
Query: 12 LNWQKVRLGDIAEIIGGGTPSTQITSFWSGSINWFTPTEIGITKYVYKSQRTI--TPL 67
L+ +K R +A+++G TS + SINW T + + K +RTI TP+
Sbjct: 44 LHMEKAR-EKVAKVLGVSPSEIFFTSCATESINWILKT---VAETFEKRKRTIITTPI 97
>pdb|1EG5|B Chain B, Nifs-Like Protein
pdb|1EG5|A Chain A, Nifs-Like Protein
Length = 384
Score = 22.3 bits (46), Expect = 8.9
Identities = 15/48 (31%), Positives = 24/48 (49%), Gaps = 5/48 (10%)
Query: 22 IAEIIGGGTPSTQITSFWSGSINWFTPTEIGITKYVYKSQRTI--TPL 67
+A+++G TS + SINW T + + K +RTI TP+
Sbjct: 53 VAKVLGVSPSEIFFTSCATESINWILKT---VAETFEKRKRTIITTPI 97
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 22.3 bits (46), Expect = 8.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 25 IIGGGTPSTQITSFWSGSINWFTPTEIGITKYVYKS-QRTITPLGLKKSSTKLLPIGTIL 83
+I GG S S+++GS+NW T G + S + + ++ GT L
Sbjct: 165 VIFGGIDS----SYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQAIVDTGTSL 220
Query: 84 LTSRAS 89
LT S
Sbjct: 221 LTGPTS 226
>pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva- Val-Val-Leu(P)-(O) Phe-Ala-Ala-Ome
pdb|1PSO|E Chain E, Pepsin 3a (E.C.3.4.23.1) Complexed With Pepstatin
pdb|1PSN| Pepsin 3a (E.C.3.4.23.1)
Length = 326
Score = 22.3 bits (46), Expect = 8.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 25 IIGGGTPSTQITSFWSGSINWFTPTEIGITKYVYKS-QRTITPLGLKKSSTKLLPIGTIL 83
+I GG S S+++GS+NW T G + S + + ++ GT L
Sbjct: 165 VIFGGIDS----SYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQAIVDTGTSL 220
Query: 84 LTSRAS 89
LT S
Sbjct: 221 LTGPTS 226
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,086
Number of Sequences: 13198
Number of extensions: 21185
Number of successful extensions: 29
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 12
length of query: 96
length of database: 2,899,336
effective HSP length: 72
effective length of query: 24
effective length of database: 1,949,080
effective search space: 46777920
effective search space used: 46777920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)