BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646018|ref|NP_208199.1| hypothetical protein
[Helicobacter pylori 26695]
         (111 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1K32|A  Chain A, Crystal Structure Of The Tricorn Protea...    30  0.050
pdb|1JTZ|X  Chain X, Crystal Structure Of TranceRANKL CYTOKI...    24  2.1
pdb|1ACC|    Anthrax Protective Antigen                            24  2.7

>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
 pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
 pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
 pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
 pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
 pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
          Length = 1045

 Score = 29.6 bits (65), Expect = 0.050
 Identities = 12/65 (18%), Positives = 30/65 (45%)

Query: 14  QPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFIT 73
           +P +  T++    P++ S +   +Q   ++   A     N+A+ +  ++ I ++Y   + 
Sbjct: 638 KPEDERTVETDKRPLVSSIHEEFLQMYDEAWKLARDNYWNEAVAKEISERIYEKYRNLVP 697

Query: 74  FTKIR 78
             K R
Sbjct: 698 LCKTR 702



>pdb|1JTZ|X Chain X, Crystal Structure Of TranceRANKL CYTOKINE.
 pdb|1JTZ|Y Chain Y, Crystal Structure Of TranceRANKL CYTOKINE.
 pdb|1JTZ|Z Chain Z, Crystal Structure Of TranceRANKL CYTOKINE
          Length = 171

 Score = 24.3 bits (51), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 5  FQKRGRNGIQPFNHSTIQPSNHP 27
          F +RG+   QPF H TI  ++ P
Sbjct: 8  FPRRGKPEAQPFAHLTINAASIP 30



>pdb|1ACC|   Anthrax Protective Antigen
          Length = 735

 Score = 23.9 bits (50), Expect = 2.7
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 40  IKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITFTKIRLKIPYFLLFP 88
           ++    + +K+  N      +  +++Q   TFI F K   K+P ++  P
Sbjct: 644 VEIEDTEGLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNP 692



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.327    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,421
Number of Sequences: 13198
Number of extensions: 14333
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 111
length of database: 2,899,336
effective HSP length: 87
effective length of query: 24
effective length of database: 1,751,110
effective search space: 42026640
effective search space used: 42026640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)