BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646020|ref|NP_208201.1| hypothetical protein
[Helicobacter pylori 26695]
(394 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj B... 36 0.007
pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosyla... 31 0.28
pdb|1AUP| Glutamate Dehydrogenase 29 0.81
pdb|1K89| K89l Mutant Of Glutamate Dehydrogenase 29 0.81
pdb|1BGV|A Chain A, Glutamate Dehydrogenase >gi|1942184|pdb... 29 0.81
pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin ... 28 1.8
pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosyla... 27 3.1
pdb|1D4G|A Chain A, Crystal Structure Of S-Adenosylhomocyst... 27 4.0
pdb|1A7A|A Chain A, Structure Of Human Placental S-Adenosyl... 27 4.0
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hyd... 27 4.0
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refine... 27 4.0
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylas... 27 4.0
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast ... 26 8.9
pdb|1CGL|A Chain A, Collagenase (E.C.3.4.24.7) (Catalytic D... 26 8.9
pdb|966C| Crystal Structure Of Fibroblast Collagenase-1 C... 26 8.9
pdb|1CGF|A Chain A, Fibroblast Collagenase (E.C.3.4.24.7) (... 26 8.9
pdb|1CGE| Collagenase (E.C.3.4.24.7) (Catalytic Domain) C... 26 8.9
>pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese
Length = 424
Score = 36.2 bits (82), Expect = 0.007
Identities = 38/141 (26%), Positives = 59/141 (40%), Gaps = 28/141 (19%)
Query: 2 PKKELLKMSKKRIFKDFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFF 60
P LL + R L+EA +Q + I + D D DG+ ++L+ LG D F
Sbjct: 9 PPLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGA-DVHPF 67
Query: 61 SPLRNAHGYGFTDLALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAA 120
P R GYG V ++ + + + L + D G +
Sbjct: 68 IPHRLEEGYG-----------------------VLMERVPEHLEASDLFLTVDCG--ITN 102
Query: 121 NTELQEILLEHFEQCIITDHH 141
+ EL+E LLE+ + I+TDHH
Sbjct: 103 HAELRE-LLENGVEVIVTDHH 122
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 30.8 bits (68), Expect = 0.28
Identities = 15/39 (38%), Positives = 27/39 (68%), Gaps = 1/39 (2%)
Query: 3 KKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLA 41
K+ LL ++ +K++LK + Q++PIV ++DC GM+A
Sbjct: 120 KENLLTAESEKEWKEWLKTS-QYKPIVNIENHDCIGMIA 157
>pdb|1AUP| Glutamate Dehydrogenase
Length = 449
Score = 29.3 bits (64), Expect = 0.81
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 112 ADLGADLAANTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGA 171
+ LG + A+ E +E+ L E+ +I + F V W D+N ++N N G
Sbjct: 30 SSLGPVVDAHPEYEEVAL--LERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGP 87
Query: 172 FTSALVFS 179
+ L F+
Sbjct: 88 YLGGLRFA 95
>pdb|1K89| K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 29.3 bits (64), Expect = 0.81
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 112 ADLGADLAANTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGA 171
+ LG + A+ E +E+ L E+ +I + F V W D+N ++N N G
Sbjct: 30 SSLGPVVDAHPEYEEVAL--LERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGP 87
Query: 172 FTSALVFS 179
+ L F+
Sbjct: 88 YLGGLRFA 95
>pdb|1BGV|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
Length = 449
Score = 29.3 bits (64), Expect = 0.81
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 112 ADLGADLAANTELQEILLEHFEQCIITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGA 171
+ LG + A+ E +E+ L E+ +I + F V W D+N ++N N G
Sbjct: 30 SSLGPVVDAHPEYEEVAL--LERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGP 87
Query: 172 FTSALVFS 179
+ L F+
Sbjct: 88 YKGGLRFA 95
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 28.1 bits (61), Expect = 1.8
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Query: 74 LALNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGAD 117
+ L LL + C+ T+Q LD I QF+KNP L S + D
Sbjct: 453 IGLISLLDEACLIAKSTDQTF-LDSICKQFEKNPHLQSYVVSKD 495
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 1/39 (2%)
Query: 3 KKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLA 41
K+ LL ++ +K++LK + Q++PIV ++D GM+A
Sbjct: 120 KENLLTAESEKEWKEWLKTS-QYKPIVNIENHDAIGMIA 157
>pdb|1D4G|A Chain A, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|B Chain B, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|C Chain C, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|D Chain D, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|E Chain E, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|F Chain F, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|G Chain G, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
pdb|1D4G|H Chain H, Crystal Structure Of S-Adenosylhomocysteine Hydrolase
(Adohcyase) Complexed With A Potent Inhibitor
D-Eritadenine
Length = 430
Score = 26.9 bits (58), Expect = 4.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 127 ILLEHFEQ-------CIITDHHKSFEVDWIDENKIAYINLNDEKD 164
IL HFEQ C I +V W++EN + +N+ + D
Sbjct: 280 ILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVD 324
>pdb|1A7A|A Chain A, Structure Of Human Placental S-Adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-Adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 26.9 bits (58), Expect = 4.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 127 ILLEHFEQ-------CIITDHHKSFEVDWIDENKIAYINLNDEKD 164
IL HFEQ C I +V W++EN + +N+ + D
Sbjct: 282 ILGRHFEQXKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVD 326
>pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
Length = 431
Score = 26.9 bits (58), Expect = 4.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 127 ILLEHFEQ-------CIITDHHKSFEVDWIDENKIAYINLNDEKD 164
IL HFEQ C I +V W++EN + +N+ + D
Sbjct: 281 ILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVD 325
>pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
Length = 431
Score = 26.9 bits (58), Expect = 4.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 127 ILLEHFEQ-------CIITDHHKSFEVDWIDENKIAYINLNDEKD 164
IL HFEQ C I +V W++EN + +N+ + D
Sbjct: 281 ILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVD 325
>pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 26.9 bits (58), Expect = 4.0
Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 1/39 (2%)
Query: 3 KKELLKMSKKRIFKDFLKEAKQHRPIVFYTDNDCDGMLA 41
K+ LL ++ +K++LK + Q++PIV ++D GM+A
Sbjct: 120 KENLLTAESEKEWKEWLKTS-QYKPIVNIENHDTIGMIA 157
>pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK| Inhibitor-Free Catalytic Fragment Of Human Fibroblast Collagenase,
Nmr, 30 Structures
pdb|2TCL| Mol_id: 1; Molecule: Fibroblast Collagenase; Chain: Null;
Fragment: Catalytic Domain; Heterogen: Synthetic
Inhibitor
pdb|1HFC| Fibroblast Collagenase (E.C.3.4.24.7)
pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|2AYK| Inhibitor-Free Catalytic Fragment Of Human Fibroblast Collagenase,
Nmr, Minimized Average Structure
Length = 169
Score = 25.8 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 233 DLSLAQDDLDEISNLYG 249
D+ LAQDD+D I +YG
Sbjct: 145 DVQLAQDDIDGIQAIYG 161
>pdb|1CGL|A Chain A, Collagenase (E.C.3.4.24.7) (Catalytic Domain)
pdb|1CGL|B Chain B, Collagenase (E.C.3.4.24.7) (Catalytic Domain)
Length = 169
Score = 25.8 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 233 DLSLAQDDLDEISNLYG 249
D+ LAQDD+D I +YG
Sbjct: 145 DVQLAQDDIDGIQAIYG 161
>pdb|966C| Crystal Structure Of Fibroblast Collagenase-1 Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 25.8 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 233 DLSLAQDDLDEISNLYG 249
D+ LAQDD+D I +YG
Sbjct: 138 DVQLAQDDIDGIQAIYG 154
>pdb|1CGF|A Chain A, Fibroblast Collagenase (E.C.3.4.24.7) (Catalytic Domain)
Binary Complex (Crystal Form Ii)
pdb|1CGF|B Chain B, Fibroblast Collagenase (E.C.3.4.24.7) (Catalytic Domain)
Binary Complex (Crystal Form Ii)
Length = 162
Score = 25.8 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 233 DLSLAQDDLDEISNLYG 249
D+ LAQDD+D I +YG
Sbjct: 144 DVQLAQDDIDGIQAIYG 160
>pdb|1CGE| Collagenase (E.C.3.4.24.7) (Catalytic Domain) Crystal Form I
Length = 168
Score = 25.8 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 233 DLSLAQDDLDEISNLYG 249
D+ LAQDD+D I +YG
Sbjct: 144 DVQLAQDDIDGIQAIYG 160
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,293,367
Number of Sequences: 13198
Number of extensions: 95757
Number of successful extensions: 180
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 18
length of query: 394
length of database: 2,899,336
effective HSP length: 90
effective length of query: 304
effective length of database: 1,711,516
effective search space: 520300864
effective search space used: 520300864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)