BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646022|ref|NP_208203.1| hypothetical protein
[Helicobacter pylori 26695]
(308 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant >g... 30 0.35
pdb|6CEL| Cbh1 (E212q) Cellopentaose Complex >gi|2780931|... 29 0.78
pdb|7CEL| Cbh1 (E217q) In Complex With Cellohexaose And C... 29 0.78
pdb|4CEL|A Chain A, Active-Site Mutant D214n Determined At ... 29 0.78
pdb|1CEL|A Chain A, 1,4-Beta-D-Glucan Cellobiohydrolase I (... 29 0.78
pdb|1EGN|A Chain A, Cellobiohydrolase Cel7a (E223s, A224h, ... 29 0.78
pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Comple... 28 1.3
pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrog... 28 1.3
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombina... 28 1.3
pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombina... 28 1.3
pdb|1BIX| The Crystal Structure Of The Human Dna Repair E... 27 2.9
pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE... 27 2.9
pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Acti... 27 2.9
pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound T... 27 2.9
pdb|1EG1|A Chain A, Endoglucanase I From Trichoderma Reesei... 27 3.9
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 26 5.0
pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From P... 25 8.6
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 25 8.6
pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex Wit... 25 8.6
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 30.0 bits (66), Expect = 0.35
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 26 AKVIGVGFNRV-----TLRSEKGNEATYAFNSDKFLKWFKEVPLNEVATNHVEKSGDDLL 80
A+ G G +V TL S E A SDK ++W+ ++ N K DDL+
Sbjct: 112 ARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWY------QLYVNSDRKITDDLV 165
Query: 81 KNV-KIVTSGQSVKDRASTPKEKEDRFKLAF-----GFKTTDDKTSFE 122
KNV K+ V A + +KE KL F GFK KT+ E
Sbjct: 166 KNVEKLGVKALFVTVDAPSLGQKEKDMKLKFSNTKAGFKAM-KKTNVE 212
>pdb|6CEL| Cbh1 (E212q) Cellopentaose Complex
pdb|5CEL| Cbh1 (E212q) Cellotetraose Complex
pdb|2CEL|A Chain A, Active-Site Mutant E212q Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|2CEL|B Chain B, Active-Site Mutant E212q Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|3CEL| Active-Site Mutant E212q Determined At Ph 6.0 With Cellobiose
Bound In The Active Site
Length = 434
Score = 28.9 bits (63), Expect = 0.78
Identities = 18/52 (34%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 215 KEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLICDGGINKYGLSCAGLTPG 266
+EF N+FS D LP N A++ + DGG++KY + AG G
Sbjct: 118 QEFTLLGNEFSFD-VDVSQLPCGLNGALYFVSMDADGGVSKYPTNTAGAKYG 168
>pdb|7CEL| Cbh1 (E217q) In Complex With Cellohexaose And Cellobiose
Length = 434
Score = 28.9 bits (63), Expect = 0.78
Identities = 18/52 (34%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 215 KEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLICDGGINKYGLSCAGLTPG 266
+EF N+FS D LP N A++ + DGG++KY + AG G
Sbjct: 118 QEFTLLGNEFSFD-VDVSQLPCGLNGALYFVSMDADGGVSKYPTNTAGAKYG 168
>pdb|4CEL|A Chain A, Active-Site Mutant D214n Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|4CEL|B Chain B, Active-Site Mutant D214n Determined At Ph 6.0 With No
Ligand Bound In The Active Site
Length = 434
Score = 28.9 bits (63), Expect = 0.78
Identities = 18/52 (34%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 215 KEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLICDGGINKYGLSCAGLTPG 266
+EF N+FS D LP N A++ + DGG++KY + AG G
Sbjct: 118 QEFTLLGNEFSFD-VDVSQLPCGLNGALYFVSMDADGGVSKYPTNTAGAKYG 168
>pdb|1CEL|A Chain A, 1,4-Beta-D-Glucan Cellobiohydrolase I (Cellulase)
(E.C.3.2.1.91)
pdb|1CEL|B Chain B, 1,4-Beta-D-Glucan Cellobiohydrolase I (Cellulase)
(E.C.3.2.1.91)
pdb|1DY4|A Chain A, Cbh1 In Complex With S-Propranolol
Length = 434
Score = 28.9 bits (63), Expect = 0.78
Identities = 18/52 (34%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 215 KEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLICDGGINKYGLSCAGLTPG 266
+EF N+FS D LP N A++ + DGG++KY + AG G
Sbjct: 118 QEFTLLGNEFSFD-VDVSQLPCGLNGALYFVSMDADGGVSKYPTNTAGAKYG 168
>pdb|1EGN|A Chain A, Cellobiohydrolase Cel7a (E223s, A224h, L225v, T226a,
D262g) Mutant
Length = 434
Score = 28.9 bits (63), Expect = 0.78
Identities = 18/52 (34%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 215 KEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLICDGGINKYGLSCAGLTPG 266
+EF N+FS D LP N A++ + DGG++KY + AG G
Sbjct: 118 QEFTLLGNEFSFD-VDVSQLPCGLNGALYFVSMDADGGVSKYPTNTAGAKYG 168
>pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
pdb|1LTD|B Chain B, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
Length = 506
Score = 28.1 bits (61), Expect = 1.3
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 26 AKVIGVGFNRV-----TLRSEKGNEATYAFNSDKFLKWFKEVPLNEVATNHVEKSGDDLL 80
A+ G G +V TL S E A SDK ++W+ ++ N K DDL+
Sbjct: 208 ARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWY------QLYVNSDRKITDDLV 261
Query: 81 KNV-KIVTSGQSVKDRASTPKEKEDRFKLAF 110
KNV K+ V A + ++E KL F
Sbjct: 262 KNVEKLGVKALFVTVDAPSLGQREKDMKLKF 292
>pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|A Chain A, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
pdb|1LCO|B Chain B, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|B Chain B, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
Length = 511
Score = 28.1 bits (61), Expect = 1.3
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 26 AKVIGVGFNRV-----TLRSEKGNEATYAFNSDKFLKWFKEVPLNEVATNHVEKSGDDLL 80
A+ G G +V TL S E A SDK ++W+ ++ N K DDL+
Sbjct: 213 ARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWY------QLYVNSDRKITDDLV 266
Query: 81 KNV-KIVTSGQSVKDRASTPKEKEDRFKLAF 110
KNV K+ V A + ++E KL F
Sbjct: 267 KNVEKLGVKALFVTVDAPSLGQREKDMKLKF 297
>pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|A Chain A, Flavocytochrome b2 (E.C.1.1.2.3)
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|B Chain B, Flavocytochrome b2 (E.C.1.1.2.3)
Length = 511
Score = 28.1 bits (61), Expect = 1.3
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 26 AKVIGVGFNRV-----TLRSEKGNEATYAFNSDKFLKWFKEVPLNEVATNHVEKSGDDLL 80
A+ G G +V TL S E A SDK ++W+ ++ N K DDL+
Sbjct: 213 ARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWY------QLYVNSDRKITDDLV 266
Query: 81 KNV-KIVTSGQSVKDRASTPKEKEDRFKLAF 110
KNV K+ V A + ++E KL F
Sbjct: 267 KNVEKLGVKALFVTVDAPSLGQREKDMKLKF 297
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
Length = 412
Score = 28.1 bits (61), Expect = 1.3
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 26 AKVIGVGFNRV-----TLRSEKGNEATYAFNSDKFLKWFKEVPLNEVATNHVEKSGDDLL 80
A+ G G +V TL S E A SDK ++W+ ++ N K DDL+
Sbjct: 114 ARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWY------QLYVNSDRKITDDLV 167
Query: 81 KNV-KIVTSGQSVKDRASTPKEKEDRFKLAF 110
KNV K+ V A + ++E KL F
Sbjct: 168 KNVEKLGVKALFVTVDAPSLGQREKDMKLKF 198
>pdb|1BIX| The Crystal Structure Of The Human Dna Repair Endonuclease Hap1
Suggests The Recognition Of Extra-Helical Deoxyribose At
Dna Abasic Sites
Length = 287
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 274 SYGMRDEDYDEEGNVI 289
SYG+ DE++D+EG VI
Sbjct: 112 SYGIGDEEHDQEGRVI 127
>pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 274 SYGMRDEDYDEEGNVI 289
SYG+ DE++D+EG VI
Sbjct: 101 SYGIGDEEHDQEGRVI 116
>pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
Length = 318
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 274 SYGMRDEDYDEEGNVI 289
SYG+ DE++D+EG VI
Sbjct: 143 SYGIGDEEHDQEGRVI 158
>pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 274 SYGMRDEDYDEEGNVI 289
SYG+ DE++D+EG VI
Sbjct: 104 SYGIGDEEHDQEGRVI 119
>pdb|1EG1|A Chain A, Endoglucanase I From Trichoderma Reesei
pdb|1EG1|C Chain C, Endoglucanase I From Trichoderma Reesei
Length = 371
Score = 26.6 bits (57), Expect = 3.9
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 6/74 (8%)
Query: 234 LPKNKNEAMFVAQLICDGGINKYGLSCA----GLTPGVLADNLWSYGMRDEDYDEEGNVI 289
LP +N +++++Q+ +GG N+Y + A G W G + + +G
Sbjct: 137 LPCGENGSLYLSQMDENGGANQYNTAGANYGSGYCDAQCPVQTWRNGTLNTSH--QGFCC 194
Query: 290 RERDIVTGEELNNA 303
E DI+ G NA
Sbjct: 195 NEMDILEGNSRANA 208
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 26.2 bits (56), Expect = 5.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 206 VIKEYAEGNKEFEKELND 223
V+KE+A G+K KELND
Sbjct: 34 VMKEFAAGSKNAAKELND 51
>pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From Phanerochaete
Chrysosporium. Catalytic Module At 1.32 Ang Resolution
Length = 431
Score = 25.4 bits (54), Expect = 8.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 234 LPKNKNEAMFVAQLICDGGINKYGLSCAGLTPG 266
LP N A++++ + DGG++KY + AG G
Sbjct: 133 LPCGLNGALYLSAMDADGGMSKYPGNKAGAKYG 165
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 25.4 bits (54), Expect = 8.6
Identities = 14/55 (25%), Positives = 26/55 (46%), Gaps = 6/55 (10%)
Query: 205 GVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLICDGGINKYGLS 259
G++ E+A+ K+ +ELN + + P NK + + G+N +G S
Sbjct: 16 GLVPEHADAFKKIARELNTY------ILFRPVNKLATNLIKSGVATKGLNVHGKS 64
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 919
Score = 25.4 bits (54), Expect = 8.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 116 DDKTSFEIIAEDYTLSERKSRLGALLSPMF 145
D +T F+ + ++Y+L+ K R ++S M+
Sbjct: 721 DIRTDFDKVVDEYSLNSGKQRFEKMISGMY 750
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,889,941
Number of Sequences: 13198
Number of extensions: 82387
Number of successful extensions: 173
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 19
length of query: 308
length of database: 2,899,336
effective HSP length: 88
effective length of query: 220
effective length of database: 1,737,912
effective search space: 382340640
effective search space used: 382340640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)