BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644647|ref|NP_206816.1| hypothetical protein
[Helicobacter pylori 26695]
         (275 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1BVW|A  Chain A, Cellobiohydrolase Ii (Cel6a) From Humic...    27  3.3
pdb|2BVW|A  Chain A, Cellobiohydrolase Ii (Cel6a) From Humic...    27  3.3
pdb|1914|    Signal Recognition Particle Alu Rna Binding Het...    25  7.4
pdb|1AUA|    Phosphatidylinositol Transfer Protein Sec14p Fr...    25  9.7

>pdb|1BVW|A Chain A, Cellobiohydrolase Ii (Cel6a) From Humicola Insolens
          Length = 360

 Score = 26.6 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (49%)

Query: 195 LEALRPFLERHNFPTKMIFAIGATPYMPFAQEHF 228
           +EA RP LE   FP + I   G +   P  Q+ +
Sbjct: 245 IEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEW 278



>pdb|2BVW|A Chain A, Cellobiohydrolase Ii (Cel6a) From Humicola Insolens In
           Complex With Glucose And Cellotetraose
 pdb|2BVW|B Chain B, Cellobiohydrolase Ii (Cel6a) From Humicola Insolens In
           Complex With Glucose And Cellotetraose
          Length = 362

 Score = 26.6 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (49%)

Query: 195 LEALRPFLERHNFPTKMIFAIGATPYMPFAQEHF 228
           +EA RP LE   FP + I   G +   P  Q+ +
Sbjct: 247 IEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEW 280



>pdb|1914|   Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914
          Length = 232

 Score = 25.4 bits (54), Expect = 7.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 93  AKLVPNFFMAFNDASVRNLDAAKLSQKKNFSPASK 127
           +K V  F MA+++    N+D  K   KKN S  SK
Sbjct: 92  SKEVNKFQMAYSNLLRANMDGLKKRDKKNKSKKSK 126



>pdb|1AUA|   Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces
           Cerevisiae
          Length = 296

 Score = 25.0 bits (53), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 83  DVKYDEKHLVAKLVPNFF 100
           D  YDEK L+AK  P ++
Sbjct: 91  DFHYDEKPLIAKFYPQYY 108



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.322    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,654,636
Number of Sequences: 13198
Number of extensions: 70270
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 4
length of query: 275
length of database: 2,899,336
effective HSP length: 87
effective length of query: 188
effective length of database: 1,751,110
effective search space: 329208680
effective search space used: 329208680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)